Wall clock time and date at job start Tue Mar 31 2020 20:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99819 * 2 1 4 4 C 1.38158 * 119.91159 * 0.02562 * 3 2 1 5 5 C 1.39744 * 119.89627 * 180.02562 * 4 3 2 6 6 C 1.47476 * 120.08602 * 180.08406 * 5 4 3 7 7 O 1.21509 * 119.99772 * 179.97438 * 6 5 4 8 8 O 1.34751 * 119.99969 * 359.97438 * 6 5 4 9 9 C 1.45204 * 116.99669 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46916 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00021 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99958 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99694 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00226 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99654 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00019 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99947 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46981 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47340 * 120.00121 * 17 15 13 20 20 H 1.48508 * 109.47052 * 240.00301 * 17 15 13 21 21 C 1.39721 * 119.82589 * 0.06143 * 5 4 3 22 22 C 1.38353 * 120.04824 * 0.02562 * 21 5 4 23 23 C 1.39129 * 120.00959 * 359.86396 * 22 21 5 24 24 O 1.36042 * 120.73134 * 180.39690 * 23 22 21 25 25 C 1.43154 * 116.75026 * 342.67573 * 24 23 22 26 26 C 1.53475 * 108.23679 * 46.29613 * 25 24 23 27 27 O 1.36165 * 119.23568 * 179.84267 * 22 21 5 28 28 H 1.08995 * 109.47664 * 59.99608 * 1 2 3 29 29 H 1.09003 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46921 * 299.99613 * 1 2 3 31 31 H 1.08002 * 120.05037 * 0.05831 * 4 3 2 32 32 H 1.08998 * 109.46843 * 299.99863 * 9 8 6 33 33 H 1.08995 * 109.47239 * 59.99868 * 9 8 6 34 34 H 0.96991 * 119.99764 * 0.02562 * 12 10 9 35 35 H 0.97002 * 119.99943 * 179.97438 * 16 15 13 36 36 H 1.07993 * 119.97236 * 179.97438 * 21 5 4 37 37 H 1.09000 * 109.70827 * 165.97988 * 25 24 23 38 38 H 1.09001 * 109.70649 * 286.56804 * 25 24 23 39 39 H 1.08995 * 109.71201 * 180.53264 * 26 25 24 40 40 H 1.09006 * 109.70897 * 59.90169 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3693 0.0005 5 6 1.9269 3.6143 0.0000 6 6 1.1258 4.8525 0.0024 7 8 1.6794 5.9342 0.0024 8 8 -0.2200 4.7843 0.0047 9 6 -0.9438 6.0431 0.0064 10 6 -2.4258 5.7704 0.0094 11 8 -2.8322 4.6275 0.0105 12 7 -3.2999 6.7963 0.0120 13 6 -4.6482 6.5481 0.0152 14 1 -5.0100 5.5306 0.0162 15 6 -5.5493 7.6059 0.0184 16 7 -5.1091 8.8441 0.0177 17 14 -7.3864 7.2678 0.0236 18 1 -7.6198 5.8013 0.0229 19 1 -7.9965 7.8660 1.2381 20 1 -8.0035 7.8672 -1.1869 21 6 3.3224 3.6829 -0.0024 22 6 4.0731 2.5207 -0.0047 23 6 3.4386 1.2825 -0.0019 24 8 4.1624 0.1306 0.0040 25 6 5.5394 0.2328 -0.3737 26 6 6.1530 1.4289 0.3668 27 8 5.4320 2.6068 -0.0103 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2136 2.3121 0.0019 32 1 -0.6779 6.6138 0.8962 33 1 -0.6809 6.6146 -0.8837 34 1 -2.9749 7.7102 0.0115 35 1 -5.7381 9.5824 0.0195 36 1 3.8153 4.6437 -0.0032 37 1 6.0655 -0.6806 -0.0962 38 1 5.6148 0.3879 -1.4500 39 1 7.2015 1.5348 0.0888 40 1 6.0710 1.2764 1.4430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731240054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:31 Heat of formation + Delta-G solvation = -193.243610 kcal Electronic energy + Delta-G solvation = -28339.787224 eV Core-core repulsion = 23893.683399 eV Total energy + Delta-G solvation = -4446.103825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72130 -40.31559 -39.45867 -38.20667 -37.58890 -36.78551 -35.99253 -34.01721 -31.89108 -31.38780 -30.36265 -29.34818 -28.23562 -27.41005 -25.49272 -24.69261 -23.42343 -21.93930 -20.74582 -19.60633 -19.21123 -18.43097 -18.08303 -17.88227 -17.16185 -16.62468 -16.35825 -16.18486 -16.01510 -15.60138 -15.52732 -15.27133 -15.09942 -14.65727 -14.57849 -14.09550 -14.01890 -13.88159 -13.55231 -13.18040 -12.82604 -12.44945 -12.36460 -11.98088 -11.86595 -11.68061 -11.63728 -11.45659 -11.16736 -11.07767 -10.82649 -10.52907 -10.43597 -10.40409 -10.31311 -9.63132 -8.57608 -8.54490 -8.30215 -8.09904 -6.51394 -3.93437 0.41623 1.00726 2.34367 2.46607 2.72114 2.86734 3.04366 3.10678 3.23073 3.30293 3.47009 3.72250 3.83996 4.09455 4.36515 4.40092 4.43548 4.53902 4.73716 4.81815 4.95771 4.96376 5.05820 5.07529 5.13895 5.15177 5.19872 5.47299 5.48614 5.61707 5.67631 5.68778 5.99123 6.01822 6.07156 6.43041 6.55013 6.81490 7.18655 7.46599 7.79790 7.94126 8.46696 9.05575 9.37837 9.87280 10.65848 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002271 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.279682 B =12328.062958 C =13479.137902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.303 6.303 3 C 0.126 3.874 4 C -0.145 4.145 5 C -0.077 4.077 6 C 0.509 3.491 7 O -0.505 6.505 8 O -0.320 6.320 9 C 0.061 3.939 10 C 0.439 3.561 11 O -0.577 6.577 12 N -0.552 5.552 13 C -0.302 4.302 14 H 0.107 0.893 15 C 0.024 3.976 16 N -0.896 5.896 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.083 4.083 22 C 0.071 3.929 23 C 0.051 3.949 24 O -0.291 6.291 25 C 0.018 3.982 26 C 0.019 3.981 27 O -0.299 6.299 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.153 0.847 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.072 -14.778 -0.041 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.217 6.217 3 C 0.079 3.921 4 C -0.164 4.164 5 C -0.078 4.078 6 C 0.354 3.646 7 O -0.395 6.395 8 O -0.235 6.235 9 C -0.017 4.017 10 C 0.224 3.776 11 O -0.461 6.461 12 N -0.189 5.189 13 C -0.431 4.431 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.760 3.240 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.101 4.101 22 C 0.026 3.974 23 C 0.004 3.996 24 O -0.205 6.205 25 C -0.058 4.058 26 C -0.057 4.057 27 O -0.213 6.213 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.179 0.821 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.941 -15.264 -0.039 25.914 hybrid contribution -0.686 0.772 -0.003 1.033 sum 20.255 -14.492 -0.041 24.906 Atomic orbital electron populations 1.23231 0.77266 1.04399 1.02544 1.86150 1.21958 1.24975 1.88586 1.17924 0.88413 0.85618 1.00119 1.21503 1.01773 0.89909 1.03243 1.18459 0.91721 0.90890 1.06753 1.20865 0.81704 0.88832 0.73231 1.90840 1.72756 1.29985 1.45912 1.86577 1.17981 1.35840 1.83067 1.22797 0.91915 0.83189 1.03752 1.19289 0.85812 0.86536 0.85976 1.90547 1.79067 1.21134 1.55382 1.41710 1.06076 1.07426 1.63733 1.19766 0.80029 0.95167 1.48111 0.87552 1.25323 1.01002 0.94586 0.96901 1.69622 1.36049 0.98361 1.49645 0.85741 0.81554 0.78889 0.77814 1.19098 1.20617 1.20620 1.20301 0.91060 0.97712 1.01073 1.18194 0.83376 0.91714 1.04122 1.18267 0.88987 0.85389 1.06917 1.86397 1.22281 1.27830 1.83993 1.23700 0.80984 1.00825 1.00285 1.23700 0.97212 0.84394 1.00366 1.86375 1.13990 1.36505 1.84441 0.91817 0.87838 0.91823 0.82096 0.89316 0.89310 0.77121 0.91656 0.82919 0.85798 0.90226 0.85740 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.79 10.24 -35.19 -0.36 -4.15 16 3 C 0.13 1.64 6.69 -39.18 -0.26 1.37 16 4 C -0.15 -1.96 8.59 -39.05 -0.34 -2.29 16 5 C -0.08 -1.10 5.87 -105.02 -0.62 -1.71 16 6 C 0.51 8.52 7.89 34.49 0.27 8.79 16 7 O -0.51 -9.09 16.13 -19.27 -0.31 -9.40 16 8 O -0.32 -5.96 9.00 -47.31 -0.43 -6.38 16 9 C 0.06 1.15 5.95 36.01 0.21 1.37 16 10 C 0.44 10.40 7.86 -10.99 -0.09 10.31 16 11 O -0.58 -15.59 16.08 -14.11 -0.23 -15.81 16 12 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 14 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 17 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 C -0.08 -1.07 9.50 -38.99 -0.37 -1.44 16 22 C 0.07 0.86 6.48 -39.21 -0.25 0.60 16 23 C 0.05 0.63 6.52 -38.82 -0.25 0.38 16 24 O -0.29 -3.23 10.16 -44.76 -0.45 -3.69 16 25 C 0.02 0.11 7.26 37.40 0.27 0.39 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 O -0.30 -3.08 10.41 -33.06 -0.34 -3.42 16 28 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.61 7.65 -51.92 -0.40 0.21 16 31 H 0.16 2.17 5.81 -52.49 -0.31 1.87 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 37 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -33.89 355.20 -5.82 -39.71 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.29 Total: 7.80 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -0.40 Total: 11.52 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.67 Total: -37.01 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.12 Total: -42.86 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.89 -5.82 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.538 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds