Wall clock time and date at job start Tue Mar 31 2020 20:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99819 * 2 1 4 4 C 1.38158 * 119.91159 * 0.02562 * 3 2 1 5 5 C 1.39744 * 119.89627 * 180.02562 * 4 3 2 6 6 C 1.47476 * 120.08602 * 180.08406 * 5 4 3 7 7 O 1.21509 * 119.99772 * 179.97438 * 6 5 4 8 8 O 1.34751 * 119.99969 * 359.97438 * 6 5 4 9 9 C 1.45204 * 116.99669 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46916 * 180.02562 * 9 8 6 11 11 O 1.21292 * 120.00021 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99958 * 179.97438 * 10 9 8 13 13 C 1.37099 * 119.99694 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00226 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99654 * 179.97438 * 13 12 10 16 16 N 1.31410 * 120.00019 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99947 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46981 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47340 * 120.00121 * 17 15 13 20 20 H 1.48508 * 109.47052 * 240.00301 * 17 15 13 21 21 C 1.39721 * 119.82589 * 0.06143 * 5 4 3 22 22 C 1.38353 * 120.04824 * 0.02562 * 21 5 4 23 23 C 1.39129 * 120.00959 * 359.86396 * 22 21 5 24 24 O 1.36042 * 120.73134 * 180.39690 * 23 22 21 25 25 C 1.43154 * 116.75026 * 342.67573 * 24 23 22 26 26 C 1.53475 * 108.23679 * 46.29613 * 25 24 23 27 27 O 1.36165 * 119.23568 * 179.84267 * 22 21 5 28 28 H 1.08995 * 109.47664 * 59.99608 * 1 2 3 29 29 H 1.09003 * 109.47231 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46921 * 299.99613 * 1 2 3 31 31 H 1.08002 * 120.05037 * 0.05831 * 4 3 2 32 32 H 1.08998 * 109.46843 * 299.99863 * 9 8 6 33 33 H 1.08995 * 109.47239 * 59.99868 * 9 8 6 34 34 H 0.96991 * 119.99764 * 0.02562 * 12 10 9 35 35 H 0.97002 * 119.99943 * 179.97438 * 16 15 13 36 36 H 1.07993 * 119.97236 * 179.97438 * 21 5 4 37 37 H 1.09000 * 109.70827 * 165.97988 * 25 24 23 38 38 H 1.09001 * 109.70649 * 286.56804 * 25 24 23 39 39 H 1.08995 * 109.71201 * 180.53264 * 26 25 24 40 40 H 1.09006 * 109.70897 * 59.90169 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3693 0.0005 5 6 1.9269 3.6143 0.0000 6 6 1.1258 4.8525 0.0024 7 8 1.6794 5.9342 0.0024 8 8 -0.2200 4.7843 0.0047 9 6 -0.9438 6.0431 0.0064 10 6 -2.4258 5.7704 0.0094 11 8 -2.8322 4.6275 0.0105 12 7 -3.2999 6.7963 0.0120 13 6 -4.6482 6.5481 0.0152 14 1 -5.0100 5.5306 0.0162 15 6 -5.5493 7.6059 0.0184 16 7 -5.1091 8.8441 0.0177 17 14 -7.3864 7.2678 0.0236 18 1 -7.6198 5.8013 0.0229 19 1 -7.9965 7.8660 1.2381 20 1 -8.0035 7.8672 -1.1869 21 6 3.3224 3.6829 -0.0024 22 6 4.0731 2.5207 -0.0047 23 6 3.4386 1.2825 -0.0019 24 8 4.1624 0.1306 0.0040 25 6 5.5394 0.2328 -0.3737 26 6 6.1530 1.4289 0.3668 27 8 5.4320 2.6068 -0.0103 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2136 2.3121 0.0019 32 1 -0.6779 6.6138 0.8962 33 1 -0.6809 6.6146 -0.8837 34 1 -2.9749 7.7102 0.0115 35 1 -5.7381 9.5824 0.0195 36 1 3.8153 4.6437 -0.0032 37 1 6.0655 -0.6806 -0.0962 38 1 5.6148 0.3879 -1.4500 39 1 7.2015 1.5348 0.0888 40 1 6.0710 1.2764 1.4430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731240054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:30 Heat of formation + Delta-G solvation = -215.723869 kcal Electronic energy + Delta-G solvation = -28340.762041 eV Core-core repulsion = 23893.683399 eV Total energy + Delta-G solvation = -4447.078642 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.58700 -41.63308 -40.39736 -40.02197 -38.46147 -37.83966 -37.32311 -36.02757 -33.42003 -32.69899 -31.29618 -30.41859 -29.55239 -28.29974 -26.77158 -26.12033 -24.50199 -22.88243 -21.76883 -21.43108 -20.20975 -20.07377 -19.36549 -18.71060 -18.31359 -17.91173 -17.77207 -17.35575 -17.15263 -16.92396 -16.46468 -16.38982 -16.05252 -15.86118 -15.78920 -15.73226 -15.36976 -14.91406 -14.65234 -14.34140 -14.07384 -13.82372 -13.57919 -13.54900 -13.23805 -12.94493 -12.67887 -12.55168 -12.45879 -12.17505 -12.10501 -11.91402 -11.85556 -11.82479 -11.58607 -11.57863 -10.51387 -10.11424 -9.50333 -9.25030 -8.52086 -6.02464 -0.65026 0.03625 1.17078 1.23776 1.35045 1.44214 1.58517 1.86658 1.88694 1.98286 2.22442 2.31126 2.42861 2.98832 3.13626 3.21639 3.43900 3.61406 3.79882 3.88604 3.95204 3.98003 4.12682 4.15463 4.16809 4.21939 4.30699 4.36783 4.49769 4.61334 4.64967 4.71147 4.75909 4.98013 5.07800 5.16432 5.37839 5.66856 5.89202 5.98805 6.30728 6.42673 6.53583 7.03167 7.40113 7.93032 8.65160 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.023400 B = 0.002271 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.279682 B =12328.062958 C =13479.137902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.312 6.312 3 C 0.116 3.884 4 C -0.147 4.147 5 C -0.092 4.092 6 C 0.514 3.486 7 O -0.520 6.520 8 O -0.334 6.334 9 C 0.070 3.930 10 C 0.438 3.562 11 O -0.615 6.615 12 N -0.558 5.558 13 C -0.335 4.335 14 H 0.085 0.915 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.998 3.002 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.081 4.081 22 C 0.076 3.924 23 C 0.055 3.945 24 O -0.306 6.306 25 C 0.010 3.990 26 C 0.012 3.988 27 O -0.308 6.308 28 H 0.061 0.939 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.155 0.845 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.400 0.600 35 H 0.280 0.720 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.163 0.837 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.470 -15.507 -0.040 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.226 6.226 3 C 0.070 3.930 4 C -0.166 4.166 5 C -0.094 4.094 6 C 0.360 3.640 7 O -0.411 6.411 8 O -0.249 6.249 9 C -0.007 4.007 10 C 0.225 3.775 11 O -0.501 6.501 12 N -0.195 5.195 13 C -0.464 4.464 14 H 0.103 0.897 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.821 3.179 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.100 4.100 22 C 0.030 3.970 23 C 0.008 3.992 24 O -0.221 6.221 25 C -0.064 4.064 26 C -0.062 4.062 27 O -0.223 6.223 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.173 0.827 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.103 0.897 39 H 0.180 0.820 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.377 -15.980 -0.038 27.497 hybrid contribution -0.941 0.881 -0.003 1.289 sum 21.435 -15.099 -0.042 26.219 Atomic orbital electron populations 1.23420 0.76099 1.06034 1.02318 1.86137 1.23186 1.24728 1.88547 1.18029 0.88985 0.85589 1.00394 1.21403 1.01538 0.90021 1.03650 1.18335 0.92062 0.89998 1.08959 1.21185 0.80864 0.89525 0.72423 1.90821 1.72679 1.30680 1.46945 1.86574 1.19182 1.35643 1.83539 1.22610 0.88623 0.83729 1.05730 1.20021 0.87701 0.85629 0.84142 1.90516 1.80335 1.22609 1.56691 1.41741 1.05810 1.07958 1.64035 1.19752 0.81493 0.94730 1.50452 0.89656 1.26135 1.05035 0.94170 0.95740 1.69679 1.37652 0.98955 1.49274 0.84796 0.76214 0.78495 0.78379 1.19473 1.19525 1.19533 1.20333 0.90527 0.98363 1.00803 1.18134 0.84368 0.91113 1.03349 1.18360 0.89029 0.86073 1.05736 1.86379 1.24545 1.27317 1.83812 1.24121 0.78817 1.02718 1.00791 1.24111 0.98468 0.82829 1.00793 1.86370 1.12868 1.38764 1.84293 0.92047 0.85285 0.92079 0.82739 0.87252 0.87242 0.76547 0.90994 0.82626 0.82278 0.89650 0.81995 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.31 -7.72 10.24 -78.85 -0.81 -8.53 16 3 C 0.12 3.03 6.69 22.53 0.15 3.18 16 4 C -0.15 -4.05 8.59 22.61 0.19 -3.86 16 5 C -0.09 -2.66 5.87 -20.12 -0.12 -2.78 16 6 C 0.51 17.31 7.89 70.26 0.55 17.86 16 7 O -0.52 -18.61 16.13 19.81 0.32 -18.29 16 8 O -0.33 -12.59 9.00 -50.23 -0.45 -13.04 16 9 C 0.07 2.64 5.95 71.24 0.42 3.07 16 10 C 0.44 21.17 7.86 87.66 0.69 21.86 16 11 O -0.61 -34.21 16.08 15.73 0.25 -33.96 16 12 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 13 C -0.34 -18.64 9.68 84.04 0.81 -17.82 16 14 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 16 N -0.92 -48.43 13.05 21.66 0.28 -48.15 16 17 Si 1.00 41.78 29.55 68.60 2.03 43.81 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 C -0.08 -2.08 9.50 22.66 0.22 -1.87 16 22 C 0.08 1.76 6.48 22.51 0.15 1.90 16 23 C 0.05 1.31 6.52 22.76 0.15 1.46 16 24 O -0.31 -6.26 10.16 -70.23 -0.71 -6.98 16 25 C 0.01 0.10 7.26 72.14 0.52 0.62 16 26 C 0.01 0.11 7.26 72.14 0.52 0.64 16 27 O -0.31 -5.74 10.41 -83.19 -0.87 -6.61 16 28 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 29 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.20 7.65 -2.38 -0.02 1.18 16 31 H 0.16 4.38 5.81 -2.91 -0.02 4.36 16 32 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 33 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 35 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.16 3.82 7.64 -2.91 -0.02 3.80 16 37 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -73.41 355.20 4.65 -68.76 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.39 Total: 27.37 kcal Atomic # 6 Polarization: 19.77 SS G_CDS: 5.84 Total: 25.61 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.34 Total: -78.15 kcal Atomic # 8 Polarization: -85.13 SS G_CDS: -2.27 Total: -87.40 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -73.41 4.65 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731240054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.968 kcal (2) G-P(sol) polarization free energy of solvation -73.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds