Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.35913 * 116.99828 * 179.97438 * 6 5 3 8 8 C 1.38867 * 119.98158 * 359.72556 * 7 6 5 9 9 C 1.38251 * 120.24628 * 179.76195 * 8 7 6 10 10 C 1.37985 * 120.21576 * 0.51310 * 9 8 7 11 11 C 1.39624 * 119.95944 * 359.74612 * 10 9 8 12 12 C 1.47743 * 120.12433 * 180.02562 * 11 10 9 13 13 O 1.21466 * 119.99709 * 179.97438 * 12 11 10 14 14 O 1.34709 * 119.99557 * 359.97438 * 12 11 10 15 15 C 1.45205 * 116.99482 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47048 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99841 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99479 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00634 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99608 * 179.97438 * 19 18 16 22 22 N 1.31419 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46929 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47434 * 119.99994 * 23 21 19 26 26 H 1.48500 * 109.47165 * 239.99816 * 23 21 19 27 27 C 1.38436 * 119.98448 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 29 29 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 33 33 H 1.08000 * 119.87306 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.89392 * 180.23622 * 9 8 7 35 35 H 1.08004 * 120.02666 * 179.76352 * 10 9 8 36 36 H 1.09003 * 109.47266 * 300.00045 * 15 14 12 37 37 H 1.08999 * 109.47142 * 60.00086 * 15 14 12 38 38 H 0.96997 * 120.00404 * 359.97438 * 18 16 15 39 39 H 0.96994 * 120.00076 * 180.02562 * 22 21 19 40 40 H 1.08004 * 120.10594 * 359.95412 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3076 2.8937 -0.0011 8 6 6.2097 1.8379 0.0051 9 6 7.5701 2.0842 0.0002 10 6 8.0409 3.3813 -0.0003 11 6 7.1418 4.4494 -0.0011 12 6 7.6419 5.8396 -0.0022 13 8 6.8577 6.7672 -0.0034 14 8 8.9677 6.0784 -0.0018 15 6 9.3871 7.4686 -0.0035 16 6 10.8924 7.5391 -0.0035 17 8 11.5474 6.5183 -0.0017 18 7 11.5109 8.7366 -0.0044 19 6 12.8804 8.8007 -0.0039 20 1 13.4636 7.8918 -0.0023 21 6 13.5180 10.0353 -0.0053 22 7 12.8083 11.1414 -0.0078 23 14 15.3839 10.1228 -0.0039 24 1 15.9439 8.7475 -0.0005 25 1 15.8467 10.8433 -1.2171 26 1 15.8445 10.8473 1.2078 27 6 5.7687 4.1990 -0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7806 0.8892 32 1 3.9557 0.7809 -0.8908 33 1 5.8471 0.8206 0.0095 34 1 8.2665 1.2588 0.0012 35 1 9.1043 3.5702 -0.0003 36 1 9.0005 7.9636 -0.8944 37 1 8.9996 7.9660 0.8856 38 1 10.9871 9.5530 -0.0055 39 1 13.2535 12.0032 -0.0092 40 1 5.0681 5.0210 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -204.131887 kcal Electronic energy + Delta-G solvation = -26887.886156 eV Core-core repulsion = 22441.310180 eV Total energy + Delta-G solvation = -4446.575976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24979 -40.64143 -39.92595 -38.23591 -37.65360 -36.86385 -36.08035 -34.00066 -31.73976 -31.40558 -31.20244 -29.63481 -28.35455 -27.50536 -25.04283 -24.07314 -22.78899 -22.00815 -20.74253 -19.58411 -19.11707 -18.08715 -17.99133 -17.52919 -17.50254 -17.11119 -16.37260 -16.33235 -16.13858 -16.01238 -15.71150 -15.22947 -14.56630 -14.26059 -14.14450 -14.04450 -13.93355 -13.84700 -13.46598 -12.98091 -12.95065 -12.62658 -12.30825 -12.15874 -12.06844 -11.62376 -11.59971 -11.45948 -11.40106 -11.15201 -10.96931 -10.52301 -10.42770 -10.38970 -10.29814 -9.61627 -9.41449 -8.65780 -8.52758 -8.08236 -6.49883 -3.91953 0.42920 1.07538 1.52172 1.56361 2.47653 2.55812 3.09794 3.11930 3.24265 3.31661 3.52371 3.73870 4.01699 4.10770 4.27094 4.34039 4.42380 4.47422 4.55813 4.65016 4.65560 4.90826 4.98054 5.00356 5.04401 5.15312 5.20355 5.52867 5.57415 5.69872 5.70698 5.80195 6.02539 6.06823 6.11581 6.22366 6.55675 6.82553 7.12845 7.48123 7.80042 7.95507 8.48341 9.07157 9.39418 9.88989 10.67371 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.043551 B = 0.001603 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.774162 B =17463.137570 C =18080.163119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.480 6.480 5 C 0.069 3.931 6 O -0.293 6.293 7 C 0.112 3.888 8 C -0.177 4.177 9 C -0.091 4.091 10 C -0.089 4.089 11 C -0.078 4.078 12 C 0.505 3.495 13 O -0.505 6.505 14 O -0.319 6.319 15 C 0.061 3.939 16 C 0.439 3.561 17 O -0.576 6.576 18 N -0.552 5.552 19 C -0.302 4.302 20 H 0.107 0.893 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.082 4.082 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.273 0.727 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.775 -22.611 0.014 30.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.303 3.697 4 O -0.364 6.364 5 C -0.008 4.008 6 O -0.207 6.207 7 C 0.067 3.933 8 C -0.196 4.196 9 C -0.109 4.109 10 C -0.107 4.107 11 C -0.079 4.079 12 C 0.349 3.651 13 O -0.395 6.395 14 O -0.233 6.233 15 C -0.016 4.016 16 C 0.224 3.776 17 O -0.460 6.460 18 N -0.189 5.189 19 C -0.431 4.431 20 H 0.125 0.875 21 C -0.177 4.177 22 N -0.537 5.537 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.100 4.100 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.083 0.917 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.869 -22.347 0.016 30.576 hybrid contribution 0.321 0.710 0.000 0.780 sum -20.548 -21.637 0.015 29.839 Atomic orbital electron populations 1.23360 0.75076 1.04143 1.03043 1.86433 1.24244 1.32280 1.84402 1.22956 0.90967 0.82026 0.73767 1.90756 1.66603 1.36150 1.42932 1.21865 0.89093 0.84104 1.05698 1.86092 1.20595 1.24510 1.89476 1.18582 0.81479 0.93703 0.99497 1.21502 0.94229 0.98384 1.05462 1.20984 0.94599 0.97077 0.98275 1.21650 1.01207 0.91459 0.96385 1.18839 0.92776 0.90632 1.05703 1.21060 0.81344 0.89467 0.73270 1.90837 1.57317 1.45593 1.45720 1.86578 1.23162 1.30570 1.82971 1.22800 0.96142 0.78975 1.03726 1.19290 0.87147 0.85207 0.85984 1.90556 1.66099 1.34067 1.55309 1.41705 1.07628 1.05844 1.63767 1.19781 0.80842 0.94406 1.48114 0.87529 1.25315 1.00920 0.94626 0.96887 1.69624 1.36492 0.97904 1.49679 0.85742 0.81789 0.78675 0.77796 1.19084 1.20632 1.20636 1.20394 0.94306 0.95083 1.00261 0.91502 0.87546 0.91509 0.87304 0.87304 0.84738 0.84406 0.83207 0.89341 0.89334 0.77129 0.91671 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.22 16 2 O -0.36 -2.26 10.56 -39.26 -0.41 -2.68 16 3 C 0.46 3.79 8.03 36.01 0.29 4.08 16 4 O -0.48 -5.84 16.25 -25.48 -0.41 -6.25 16 5 C 0.07 0.41 5.33 36.01 0.19 0.61 16 6 O -0.29 -2.97 9.67 -39.42 -0.38 -3.35 16 7 C 0.11 1.13 6.68 -39.28 -0.26 0.87 16 8 C -0.18 -1.36 9.03 -39.34 -0.36 -1.71 16 9 C -0.09 -0.78 10.02 -39.67 -0.40 -1.17 16 10 C -0.09 -1.03 9.61 -39.16 -0.38 -1.40 16 11 C -0.08 -1.06 5.87 -105.00 -0.62 -1.67 16 12 C 0.50 8.40 7.90 34.62 0.27 8.67 16 13 O -0.50 -9.23 16.14 -19.24 -0.31 -9.54 16 14 O -0.32 -5.93 9.00 -47.19 -0.42 -6.36 16 15 C 0.06 1.16 5.95 36.01 0.21 1.38 16 16 C 0.44 10.50 7.86 -10.98 -0.09 10.41 16 17 O -0.58 -15.75 16.08 -14.11 -0.23 -15.98 16 18 N -0.55 -13.89 5.29 -10.96 -0.06 -13.95 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 22 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 23 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 C -0.08 -1.01 9.53 -39.01 -0.37 -1.38 16 28 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 29 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 31 H 0.11 0.36 7.64 -51.93 -0.40 -0.03 16 32 H 0.11 0.36 7.67 -51.93 -0.40 -0.03 16 33 H 0.13 0.55 6.28 -52.49 -0.33 0.22 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.15 1.83 7.61 -52.48 -0.40 1.43 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.15 1.91 7.65 -52.48 -0.40 1.51 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -35.64 367.43 -5.96 -41.60 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.29 Total: 6.65 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -0.67 Total: 12.01 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.67 Total: -37.22 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.17 Total: -44.16 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.64 -5.96 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.534 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds