Wall clock time and date at job start Tue Mar 31 2020 20:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20826 * 120.00015 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00046 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.35913 * 116.99828 * 179.97438 * 6 5 3 8 8 C 1.38867 * 119.98158 * 359.72556 * 7 6 5 9 9 C 1.38251 * 120.24628 * 179.76195 * 8 7 6 10 10 C 1.37985 * 120.21576 * 0.51310 * 9 8 7 11 11 C 1.39624 * 119.95944 * 359.74612 * 10 9 8 12 12 C 1.47743 * 120.12433 * 180.02562 * 11 10 9 13 13 O 1.21466 * 119.99709 * 179.97438 * 12 11 10 14 14 O 1.34709 * 119.99557 * 359.97438 * 12 11 10 15 15 C 1.45205 * 116.99482 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47048 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00113 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99841 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99479 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00634 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99608 * 179.97438 * 19 18 16 22 22 N 1.31419 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00111 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46929 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47434 * 119.99994 * 23 21 19 26 26 H 1.48500 * 109.47165 * 239.99816 * 23 21 19 27 27 C 1.38436 * 119.98448 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47321 * 60.00129 * 1 2 3 29 29 H 1.09002 * 109.47011 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47630 * 300.00318 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99765 * 5 3 2 32 32 H 1.09001 * 109.47380 * 59.99853 * 5 3 2 33 33 H 1.08000 * 119.87306 * 0.02562 * 8 7 6 34 34 H 1.07999 * 119.89392 * 180.23622 * 9 8 7 35 35 H 1.08004 * 120.02666 * 179.76352 * 10 9 8 36 36 H 1.09003 * 109.47266 * 300.00045 * 15 14 12 37 37 H 1.08999 * 109.47142 * 60.00086 * 15 14 12 38 38 H 0.96997 * 120.00404 * 359.97438 * 18 16 15 39 39 H 0.96994 * 120.00076 * 180.02562 * 22 21 19 40 40 H 1.08004 * 120.10594 * 359.95412 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9714 2.6453 -0.0011 7 6 5.3076 2.8937 -0.0011 8 6 6.2097 1.8379 0.0051 9 6 7.5701 2.0842 0.0002 10 6 8.0409 3.3813 -0.0003 11 6 7.1418 4.4494 -0.0011 12 6 7.6419 5.8396 -0.0022 13 8 6.8577 6.7672 -0.0034 14 8 8.9677 6.0784 -0.0018 15 6 9.3871 7.4686 -0.0035 16 6 10.8924 7.5391 -0.0035 17 8 11.5474 6.5183 -0.0017 18 7 11.5109 8.7366 -0.0044 19 6 12.8804 8.8007 -0.0039 20 1 13.4636 7.8918 -0.0023 21 6 13.5180 10.0353 -0.0053 22 7 12.8083 11.1414 -0.0078 23 14 15.3839 10.1228 -0.0039 24 1 15.9439 8.7475 -0.0005 25 1 15.8467 10.8433 -1.2171 26 1 15.8445 10.8473 1.2078 27 6 5.7687 4.1990 -0.0010 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9563 0.7806 0.8892 32 1 3.9557 0.7809 -0.8908 33 1 5.8471 0.8206 0.0095 34 1 8.2665 1.2588 0.0012 35 1 9.1043 3.5702 -0.0003 36 1 9.0005 7.9636 -0.8944 37 1 8.9996 7.9660 0.8856 38 1 10.9871 9.5530 -0.0055 39 1 13.2535 12.0032 -0.0092 40 1 5.0681 5.0210 -0.0017 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242533.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:38 Heat of formation + Delta-G solvation = -227.235761 kcal Electronic energy + Delta-G solvation = -26888.888015 eV Core-core repulsion = 22441.310180 eV Total energy + Delta-G solvation = -4447.577835 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98846 -41.67682 -40.86232 -40.02799 -38.51636 -37.57058 -37.46853 -36.03269 -33.42436 -32.55088 -31.98145 -30.30740 -29.90034 -27.91901 -26.77408 -25.31127 -23.57153 -22.76691 -21.68423 -21.44227 -20.07943 -19.98096 -18.77332 -18.42523 -18.04194 -18.02345 -17.77931 -17.76634 -17.10611 -16.97106 -16.58905 -16.46467 -16.08844 -15.79172 -15.76934 -14.97845 -14.70234 -14.65617 -14.49251 -14.09756 -14.08895 -13.65357 -13.56084 -13.50890 -13.07805 -12.94193 -12.87211 -12.46217 -12.29979 -12.22920 -12.09976 -11.92822 -11.89286 -11.79863 -11.59645 -11.58425 -10.52272 -10.22125 -10.11862 -9.42870 -8.52271 -6.03045 -0.48900 0.28789 0.95647 0.98364 1.31000 1.34213 1.36484 1.44985 1.59436 1.86081 2.28868 2.46459 2.65506 3.01242 3.13280 3.50240 3.54062 3.72851 3.95117 3.96627 4.03241 4.05731 4.12450 4.12849 4.20106 4.25534 4.28272 4.31260 4.38981 4.70912 4.78437 5.03673 5.15500 5.21004 5.24412 5.32557 5.37571 5.49603 5.88763 6.15278 6.42941 6.54199 6.57304 7.02609 7.39245 7.92144 8.64987 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.043551 B = 0.001603 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.774162 B =17463.137570 C =18080.163119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.463 3.537 4 O -0.532 6.532 5 C 0.061 3.939 6 O -0.320 6.320 7 C 0.115 3.885 8 C -0.152 4.152 9 C -0.079 4.079 10 C -0.099 4.099 11 C -0.101 4.101 12 C 0.505 3.495 13 O -0.530 6.530 14 O -0.332 6.332 15 C 0.070 3.930 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.557 5.557 19 C -0.338 4.338 20 H 0.086 0.914 21 C -0.009 4.009 22 N -0.916 5.916 23 Si 0.999 3.001 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.185 0.815 34 H 0.175 0.825 35 H 0.137 0.863 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.281 0.719 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.804 -25.440 0.019 32.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.306 3.694 4 O -0.420 6.420 5 C -0.014 4.014 6 O -0.234 6.234 7 C 0.070 3.930 8 C -0.170 4.170 9 C -0.097 4.097 10 C -0.117 4.117 11 C -0.102 4.102 12 C 0.351 3.649 13 O -0.421 6.421 14 O -0.247 6.247 15 C -0.007 4.007 16 C 0.225 3.775 17 O -0.501 6.501 18 N -0.195 5.195 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.209 4.209 22 N -0.556 5.556 23 Si 0.822 3.178 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.120 4.120 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.202 0.798 34 H 0.192 0.808 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.926 -25.188 0.020 32.747 hybrid contribution 0.180 1.442 -0.001 1.453 sum -20.746 -23.746 0.018 31.533 Atomic orbital electron populations 1.23621 0.74047 1.06128 1.02604 1.86441 1.25299 1.31205 1.83750 1.23520 0.91973 0.81705 0.72156 1.90744 1.67862 1.37817 1.45608 1.22330 0.87518 0.82489 1.09056 1.86055 1.20476 1.27436 1.89440 1.18562 0.82118 0.93320 0.98957 1.21989 0.93195 0.99840 1.01938 1.21378 0.95758 0.96375 0.96173 1.21678 1.00293 0.92598 0.97173 1.18695 0.93566 0.89108 1.08871 1.21682 0.80195 0.90840 0.72174 1.90808 1.57437 1.46663 1.47208 1.86577 1.24687 1.29953 1.83491 1.22581 0.92565 0.80078 1.05468 1.19995 0.89076 0.84211 0.84223 1.90518 1.67662 1.35221 1.56704 1.41737 1.07252 1.06480 1.63984 1.19788 0.81951 0.94361 1.50585 0.89574 1.26143 1.05377 0.93812 0.95613 1.69684 1.38283 0.98404 1.49212 0.84780 0.76120 0.78504 0.78380 1.19400 1.19509 1.19520 1.20300 0.93510 0.96228 1.01922 0.92013 0.84312 0.92017 0.83678 0.83688 0.79790 0.80784 0.84519 0.87531 0.87522 0.76596 0.90986 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.40 16 2 O -0.35 -3.66 10.56 -51.41 -0.54 -4.20 16 3 C 0.46 6.82 8.03 71.24 0.57 7.39 16 4 O -0.53 -13.00 16.25 28.40 0.46 -12.54 16 5 C 0.06 0.51 5.33 71.24 0.38 0.89 16 6 O -0.32 -5.89 9.67 -73.49 -0.71 -6.60 16 7 C 0.11 2.10 6.68 22.47 0.15 2.25 16 8 C -0.15 -1.63 9.03 22.42 0.20 -1.43 16 9 C -0.08 -1.05 10.02 22.21 0.22 -0.83 16 10 C -0.10 -2.21 9.61 22.54 0.22 -1.99 16 11 C -0.10 -2.79 5.87 -20.11 -0.12 -2.91 16 12 C 0.50 17.50 7.90 70.34 0.56 18.06 16 13 O -0.53 -20.23 16.14 19.94 0.32 -19.91 16 14 O -0.33 -12.79 9.00 -49.80 -0.45 -13.24 16 15 C 0.07 2.74 5.95 71.24 0.42 3.16 16 16 C 0.44 21.59 7.86 87.66 0.69 22.28 16 17 O -0.61 -34.75 16.08 15.73 0.25 -34.50 16 18 N -0.56 -28.77 5.29 -306.98 -1.62 -30.39 16 19 C -0.34 -18.99 9.68 84.04 0.81 -18.17 16 20 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 21 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 22 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 23 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 C -0.10 -2.53 9.53 22.64 0.22 -2.32 16 28 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 29 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 0.50 8.13 -2.39 -0.02 0.48 16 31 H 0.15 0.19 7.64 -2.39 -0.02 0.17 16 32 H 0.15 0.19 7.67 -2.39 -0.02 0.17 16 33 H 0.18 0.16 6.28 -2.91 -0.02 0.14 16 34 H 0.17 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.14 3.38 7.61 -2.91 -0.02 3.36 16 36 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 39 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 40 H 0.13 3.62 7.65 -2.91 -0.02 3.60 16 Total: -1.00 -81.49 367.43 6.39 -75.11 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.38 Total: 23.03 kcal Atomic # 6 Polarization: 21.78 SS G_CDS: 5.99 Total: 27.77 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -1.34 Total: -78.96 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -0.67 Total: -90.98 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -81.49 6.39 -75.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242533.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.129 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds