Wall clock time and date at job start Tue Mar 31 2020 20:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20825 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99991 * 180.02562 * 3 2 1 6 6 O 1.42899 * 109.47130 * 180.02562 * 5 3 2 7 7 C 1.35694 * 117.00093 * 179.97438 * 6 5 3 8 8 C 1.39021 * 119.90499 * 0.27444 * 7 6 5 9 9 C 1.37679 * 120.09068 * 180.28089 * 8 7 6 10 10 C 1.39794 * 119.90398 * 359.43972 * 9 8 7 11 11 C 1.47473 * 120.08904 * 180.29757 * 10 9 8 12 12 O 1.21498 * 120.00032 * 0.02562 * 11 10 9 13 13 O 1.34752 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46797 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00302 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99776 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99896 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99839 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47081 * 59.99930 * 22 20 18 24 24 H 1.48497 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46927 * 299.99576 * 22 20 18 26 26 C 1.39784 * 119.81736 * 0.28441 * 10 9 8 27 27 C 1.37681 * 119.90771 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47366 * 300.00169 * 1 2 3 30 30 H 1.09000 * 109.47118 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.46919 * 59.99646 * 5 3 2 32 32 H 1.09000 * 109.46708 * 299.99558 * 5 3 2 33 33 H 1.07998 * 119.95278 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.04953 * 179.72504 * 9 8 7 35 35 H 1.09000 * 109.47171 * 300.00282 * 14 13 11 36 36 H 1.09001 * 109.46834 * 60.00652 * 14 13 11 37 37 H 0.97003 * 119.99677 * 0.02562 * 17 15 14 38 38 H 0.96998 * 119.99992 * 179.97438 * 21 20 18 39 39 H 1.08005 * 120.04680 * 180.02562 * 26 10 9 40 40 H 1.08000 * 119.95490 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 0.0001 7 6 5.3055 2.8933 0.0003 8 6 6.2072 1.8351 -0.0060 9 6 7.5616 2.0823 -0.0001 10 6 8.0297 3.3996 0.0005 11 6 9.4796 3.6690 0.0002 12 8 10.2691 2.7455 -0.0010 13 8 9.9287 4.9395 0.0013 14 6 11.3682 5.1297 0.0004 15 6 11.6800 6.6041 0.0024 16 8 10.7779 7.4148 0.0049 17 7 12.9614 7.0219 0.0025 18 6 13.2451 8.3633 0.0049 19 1 12.4418 9.0851 0.0063 20 6 14.5661 8.7940 0.0045 21 7 15.5436 7.9156 0.0023 22 14 14.9527 10.6215 0.0085 23 1 14.3716 11.2477 1.2231 24 1 16.4248 10.8161 0.0079 25 1 14.3690 11.2535 -1.2018 26 6 7.1196 4.4606 0.0010 27 6 5.7668 4.2046 0.0004 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9556 0.7809 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 5.8447 0.8178 -0.0106 34 1 8.2615 1.2598 -0.0005 35 1 11.7965 4.6669 0.8895 36 1 11.7950 4.6690 -0.8905 37 1 13.6829 6.3736 0.0009 38 1 16.4658 8.2163 0.0016 39 1 7.4771 5.4797 0.0010 40 1 5.0630 5.0238 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:42 Heat of formation + Delta-G solvation = -205.958544 kcal Electronic energy + Delta-G solvation = -26791.819926 eV Core-core repulsion = 22345.164741 eV Total energy + Delta-G solvation = -4446.655185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29840 -40.62687 -39.96108 -38.24812 -37.64355 -36.90052 -36.01889 -33.99145 -31.67875 -31.41433 -31.18935 -29.91905 -28.27859 -27.55711 -24.85023 -23.78032 -23.31078 -21.63762 -20.86820 -19.57004 -19.07808 -18.10169 -18.03834 -17.88949 -17.54678 -17.27720 -16.62299 -16.29109 -16.07291 -15.76699 -15.63473 -14.83023 -14.56196 -14.23895 -14.12662 -14.03289 -13.88446 -13.79537 -13.58392 -13.07015 -12.95998 -12.64014 -12.61325 -12.31318 -11.99728 -11.61030 -11.59332 -11.42963 -11.32092 -11.10439 -10.99023 -10.49269 -10.47912 -10.40253 -10.27905 -9.58670 -9.41576 -8.70974 -8.51520 -8.07350 -6.48993 -3.91105 0.52553 1.01451 1.49381 1.52444 2.49824 2.69592 2.94546 3.16410 3.23715 3.28531 3.53782 3.75122 3.97675 4.12241 4.24553 4.30445 4.44566 4.46673 4.53555 4.61534 4.62697 4.89374 4.96057 5.01255 5.10429 5.16114 5.26457 5.50412 5.67370 5.68187 5.71108 5.78904 5.87360 6.05594 6.11420 6.27326 6.60185 6.76767 7.08758 7.48534 7.84362 7.96843 8.49436 9.07878 9.40202 9.90102 10.68121 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.001581 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.167086 B =17711.596639 C =18440.013674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.481 6.481 5 C 0.066 3.934 6 O -0.291 6.291 7 C 0.159 3.841 8 C -0.225 4.225 9 C -0.012 4.012 10 C -0.155 4.155 11 C 0.507 3.493 12 O -0.515 6.515 13 O -0.322 6.322 14 C 0.062 3.938 15 C 0.438 3.562 16 O -0.576 6.576 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.897 5.897 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.015 4.015 27 C -0.157 4.157 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.156 0.844 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.893 -19.349 -0.019 30.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.304 3.696 4 O -0.366 6.366 5 C -0.010 4.010 6 O -0.203 6.203 7 C 0.113 3.887 8 C -0.244 4.244 9 C -0.031 4.031 10 C -0.157 4.157 11 C 0.353 3.647 12 O -0.406 6.406 13 O -0.236 6.236 14 C -0.016 4.016 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.033 4.033 27 C -0.176 4.176 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.173 0.827 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.432 -18.568 -0.017 30.687 hybrid contribution 0.793 0.150 0.001 0.807 sum -23.638 -18.418 -0.016 29.966 Atomic orbital electron populations 1.23365 0.75025 1.04188 1.03037 1.86439 1.24278 1.32228 1.84347 1.22940 0.90932 0.82046 0.73727 1.90752 1.66610 1.36157 1.43040 1.21925 0.89166 0.83929 1.05989 1.86050 1.21065 1.24871 1.88354 1.19284 0.81093 0.94492 0.93829 1.21142 0.93399 0.98575 1.11258 1.21038 0.94907 0.95710 0.91416 1.19091 0.89898 0.94483 1.12199 1.21064 0.89413 0.81370 0.72891 1.90818 1.57567 1.45466 1.46701 1.86587 1.26195 1.27713 1.83100 1.22763 0.77218 0.97981 1.03592 1.19311 0.84352 0.88044 0.85977 1.90556 1.45393 1.54798 1.55278 1.41693 1.04836 1.08595 1.63811 1.19681 0.92957 0.82292 1.48317 0.87648 1.25304 0.95048 1.00468 0.96858 1.69608 1.00045 1.34523 1.49594 0.85858 0.77132 0.81708 0.79190 1.19763 1.20881 1.19760 1.21516 0.91237 1.00279 0.90281 1.20461 0.95837 0.94213 1.07060 0.87518 0.91489 0.91496 0.87070 0.87080 0.84402 0.83901 0.89450 0.89447 0.77146 0.91586 0.82666 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.15 10.56 101.05 1.07 1.21 16 2 O -0.36 -2.16 10.57 -39.27 -0.41 -2.58 16 3 C 0.46 3.59 8.03 36.01 0.29 3.88 16 4 O -0.48 -5.56 16.25 -25.48 -0.41 -5.97 16 5 C 0.07 0.37 5.32 36.01 0.19 0.56 16 6 O -0.29 -2.70 9.66 -38.74 -0.37 -3.08 16 7 C 0.16 1.50 6.70 -39.00 -0.26 1.24 16 8 C -0.23 -1.82 9.01 -39.50 -0.36 -2.18 16 9 C -0.01 -0.13 9.59 -39.20 -0.38 -0.50 16 10 C -0.16 -2.01 5.87 -104.98 -0.62 -2.63 16 11 C 0.51 8.23 7.89 34.49 0.27 8.50 16 12 O -0.51 -9.04 16.13 -19.26 -0.31 -9.35 16 13 O -0.32 -5.97 9.00 -47.31 -0.43 -6.40 16 14 C 0.06 1.18 5.95 36.01 0.21 1.39 16 15 C 0.44 10.51 7.86 -10.98 -0.09 10.42 16 16 O -0.58 -15.84 16.08 -14.11 -0.23 -16.07 16 17 N -0.55 -13.90 5.29 -10.97 -0.06 -13.96 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 19 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 22 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 C -0.02 -0.18 9.61 -39.21 -0.38 -0.56 16 27 C -0.16 -1.63 9.97 -39.50 -0.39 -2.03 16 28 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 30 H 0.07 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.11 0.35 7.64 -51.93 -0.40 -0.05 16 32 H 0.11 0.35 7.66 -51.93 -0.40 -0.05 16 33 H 0.14 0.63 6.28 -52.49 -0.33 0.30 16 34 H 0.14 1.35 7.64 -52.49 -0.40 0.95 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.16 1.94 7.60 -52.48 -0.40 1.54 16 40 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -35.50 367.35 -5.95 -41.45 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.29 Total: 6.62 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.67 Total: 11.41 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.67 Total: -37.23 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -2.17 Total: -43.45 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.50 -5.95 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.507 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds