Wall clock time and date at job start Tue Mar 31 2020 20:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20825 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99991 * 180.02562 * 3 2 1 6 6 O 1.42899 * 109.47130 * 180.02562 * 5 3 2 7 7 C 1.35694 * 117.00093 * 179.97438 * 6 5 3 8 8 C 1.39021 * 119.90499 * 0.27444 * 7 6 5 9 9 C 1.37679 * 120.09068 * 180.28089 * 8 7 6 10 10 C 1.39794 * 119.90398 * 359.43972 * 9 8 7 11 11 C 1.47473 * 120.08904 * 180.29757 * 10 9 8 12 12 O 1.21498 * 120.00032 * 0.02562 * 11 10 9 13 13 O 1.34752 * 119.99783 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99850 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46797 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00302 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99776 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99896 * 180.02562 * 17 15 14 19 19 H 1.07994 * 120.00075 * 359.97438 * 18 17 15 20 20 C 1.38944 * 119.99839 * 180.02562 * 18 17 15 21 21 N 1.31418 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00073 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47081 * 59.99930 * 22 20 18 24 24 H 1.48497 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.46927 * 299.99576 * 22 20 18 26 26 C 1.39784 * 119.81736 * 0.28441 * 10 9 8 27 27 C 1.37681 * 119.90771 * 359.97438 * 26 10 9 28 28 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47366 * 300.00169 * 1 2 3 30 30 H 1.09000 * 109.47118 * 60.00054 * 1 2 3 31 31 H 1.09000 * 109.46919 * 59.99646 * 5 3 2 32 32 H 1.09000 * 109.46708 * 299.99558 * 5 3 2 33 33 H 1.07998 * 119.95278 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.04953 * 179.72504 * 9 8 7 35 35 H 1.09000 * 109.47171 * 300.00282 * 14 13 11 36 36 H 1.09001 * 109.46834 * 60.00652 * 14 13 11 37 37 H 0.97003 * 119.99677 * 0.02562 * 17 15 14 38 38 H 0.96998 * 119.99992 * 179.97438 * 21 20 18 39 39 H 1.08005 * 120.04680 * 180.02562 * 26 10 9 40 40 H 1.08000 * 119.95490 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 0.0001 7 6 5.3055 2.8933 0.0003 8 6 6.2072 1.8351 -0.0060 9 6 7.5616 2.0823 -0.0001 10 6 8.0297 3.3996 0.0005 11 6 9.4796 3.6690 0.0002 12 8 10.2691 2.7455 -0.0010 13 8 9.9287 4.9395 0.0013 14 6 11.3682 5.1297 0.0004 15 6 11.6800 6.6041 0.0024 16 8 10.7779 7.4148 0.0049 17 7 12.9614 7.0219 0.0025 18 6 13.2451 8.3633 0.0049 19 1 12.4418 9.0851 0.0063 20 6 14.5661 8.7940 0.0045 21 7 15.5436 7.9156 0.0023 22 14 14.9527 10.6215 0.0085 23 1 14.3716 11.2477 1.2231 24 1 16.4248 10.8161 0.0079 25 1 14.3690 11.2535 -1.2018 26 6 7.1196 4.4606 0.0010 27 6 5.7668 4.2046 0.0004 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9556 0.7809 -0.8908 32 1 3.9563 0.7807 0.8892 33 1 5.8447 0.8178 -0.0106 34 1 8.2615 1.2598 -0.0005 35 1 11.7965 4.6669 0.8895 36 1 11.7950 4.6690 -0.8905 37 1 13.6829 6.3736 0.0009 38 1 16.4658 8.2163 0.0016 39 1 7.4771 5.4797 0.0010 40 1 5.0630 5.0238 0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:41 Heat of formation + Delta-G solvation = -228.563712 kcal Electronic energy + Delta-G solvation = -26792.800160 eV Core-core repulsion = 22345.164741 eV Total energy + Delta-G solvation = -4447.635419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.97109 -41.63720 -40.88985 -40.01726 -38.53444 -37.55936 -37.37569 -36.02472 -33.41500 -32.41173 -32.06616 -30.59518 -29.78409 -27.96977 -26.67687 -24.88964 -24.05043 -22.30508 -21.90251 -21.41744 -20.06855 -19.73540 -19.13913 -18.58110 -18.05746 -18.00017 -17.90547 -17.69184 -17.39135 -16.62290 -16.57521 -16.43144 -15.82557 -15.72762 -15.53999 -14.96077 -14.72211 -14.57466 -14.49024 -14.11797 -14.06612 -13.68375 -13.55749 -13.49499 -13.42714 -12.99113 -12.92941 -12.48157 -12.25013 -12.12369 -12.06739 -11.89089 -11.86652 -11.74940 -11.61029 -11.56525 -10.50850 -10.19133 -10.11206 -9.50288 -8.51595 -6.02339 -0.38865 0.24698 0.97709 1.00363 1.34812 1.37803 1.41027 1.45481 1.56564 1.87794 2.30406 2.39802 2.65787 3.04712 3.13954 3.47455 3.62479 3.70162 3.81122 3.99255 4.00982 4.05124 4.12095 4.16685 4.22528 4.28240 4.29562 4.31789 4.49294 4.71439 4.92103 4.96259 5.05334 5.20985 5.26002 5.31173 5.37601 5.47085 5.89424 6.09448 6.46032 6.56097 6.62033 7.03336 7.40300 7.93901 8.65136 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.037118 B = 0.001581 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.167086 B =17711.596639 C =18440.013674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.464 3.536 4 O -0.529 6.529 5 C 0.058 3.942 6 O -0.310 6.310 7 C 0.169 3.831 8 C -0.207 4.207 9 C -0.008 4.008 10 C -0.181 4.181 11 C 0.508 3.492 12 O -0.532 6.532 13 O -0.340 6.340 14 C 0.072 3.928 15 C 0.436 3.564 16 O -0.617 6.617 17 N -0.557 5.557 18 C -0.340 4.340 19 H 0.085 0.915 20 C -0.007 4.007 21 N -0.915 5.915 22 Si 0.998 3.002 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.023 4.023 27 C -0.166 4.166 28 H 0.138 0.862 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.184 0.816 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.138 0.862 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.522 -21.606 -0.023 32.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.308 3.692 4 O -0.418 6.418 5 C -0.017 4.017 6 O -0.223 6.223 7 C 0.123 3.877 8 C -0.225 4.225 9 C -0.026 4.026 10 C -0.182 4.182 11 C 0.355 3.645 12 O -0.424 6.424 13 O -0.255 6.255 14 C -0.005 4.005 15 C 0.223 3.777 16 O -0.504 6.504 17 N -0.194 5.194 18 C -0.469 4.469 19 H 0.103 0.897 20 C -0.208 4.208 21 N -0.554 5.554 22 Si 0.821 3.179 23 H -0.195 1.195 24 H -0.193 1.193 25 H -0.195 1.195 26 C -0.041 4.041 27 C -0.185 4.185 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.201 0.799 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.156 0.844 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.053 -20.882 -0.021 32.615 hybrid contribution 0.806 0.717 0.002 1.079 sum -24.247 -20.165 -0.019 31.537 Atomic orbital electron populations 1.23624 0.73971 1.06114 1.02674 1.86446 1.25361 1.31267 1.83730 1.23447 0.91846 0.81733 0.72207 1.90741 1.67796 1.37698 1.45568 1.22375 0.87714 0.82439 1.09180 1.86026 1.20692 1.27550 1.88008 1.19299 0.81597 0.94324 0.92466 1.21512 0.91904 1.00267 1.08778 1.21224 0.96186 0.94556 0.90659 1.19084 0.87824 0.96077 1.15215 1.21621 0.90698 0.80149 0.72016 1.90792 1.58254 1.45423 1.47923 1.86593 1.25573 1.29659 1.83725 1.22533 0.78333 0.94160 1.05446 1.20092 0.83429 0.90030 0.84149 1.90521 1.46435 1.56682 1.56748 1.41721 1.05534 1.08145 1.64014 1.19699 0.93226 0.83176 1.50831 0.89750 1.26108 0.94316 1.04772 0.95592 1.69667 1.00473 1.36243 1.49062 0.84921 0.77511 0.76403 0.79107 1.19536 1.19344 1.19525 1.21345 0.91972 0.99464 0.91336 1.20516 0.95155 0.95508 1.07282 0.84436 0.91913 0.91921 0.83669 0.83687 0.79896 0.82799 0.87484 0.87473 0.76541 0.90956 0.84377 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 113.37 1.20 1.38 16 2 O -0.35 -3.45 10.57 -51.46 -0.54 -3.99 16 3 C 0.46 6.29 8.03 71.24 0.57 6.86 16 4 O -0.53 -11.99 16.25 28.40 0.46 -11.53 16 5 C 0.06 0.43 5.32 71.24 0.38 0.81 16 6 O -0.31 -4.98 9.66 -71.05 -0.69 -5.66 16 7 C 0.17 2.77 6.70 22.64 0.15 2.93 16 8 C -0.21 -2.54 9.01 22.33 0.20 -2.33 16 9 C -0.01 -0.15 9.59 22.51 0.22 0.07 16 10 C -0.18 -4.61 5.87 -20.09 -0.12 -4.73 16 11 C 0.51 16.52 7.89 70.26 0.55 17.07 16 12 O -0.53 -18.37 16.13 19.84 0.32 -18.05 16 13 O -0.34 -12.93 9.00 -50.24 -0.45 -13.39 16 14 C 0.07 2.78 5.95 71.24 0.42 3.20 16 15 C 0.44 21.51 7.86 87.66 0.69 22.20 16 16 O -0.62 -35.30 16.08 15.74 0.25 -35.04 16 17 N -0.56 -28.72 5.29 -306.99 -1.62 -30.34 16 18 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 19 H 0.08 5.03 7.16 -2.91 -0.02 5.01 16 20 C -0.01 -0.37 5.50 84.92 0.47 0.10 16 21 N -0.91 -48.61 13.05 21.66 0.28 -48.33 16 22 Si 1.00 42.16 29.55 68.60 2.03 44.19 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C -0.02 -0.56 9.61 22.51 0.22 -0.34 16 27 C -0.17 -3.37 9.97 22.32 0.22 -3.14 16 28 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.06 0.45 8.13 -2.39 -0.02 0.44 16 30 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 31 H 0.15 0.15 7.64 -2.39 -0.02 0.14 16 32 H 0.15 0.16 7.66 -2.39 -0.02 0.14 16 33 H 0.18 0.54 6.28 -2.91 -0.02 0.52 16 34 H 0.15 2.46 7.64 -2.91 -0.02 2.44 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 38 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.14 3.75 7.60 -2.91 -0.02 3.73 16 40 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -79.29 367.35 6.40 -72.89 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.38 Total: 23.56 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 5.99 Total: 25.69 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -1.34 Total: -78.67 kcal Atomic # 8 Polarization: -87.01 SS G_CDS: -0.65 Total: -87.66 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -79.29 6.40 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.678 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds