Wall clock time and date at job start Tue Mar 31 2020 20:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35669 * 117.00025 * 2 1 4 4 C 1.39280 * 119.83363 * 0.02562 * 3 2 1 5 5 C 1.36430 * 120.40707 * 179.97438 * 4 3 2 6 6 C 1.40177 * 120.05451 * 0.02562 * 5 4 3 7 7 C 1.46487 * 120.15939 * 180.27589 * 6 5 4 8 8 O 1.21341 * 119.99630 * 179.71997 * 7 6 5 9 9 C 1.40645 * 119.66945 * 359.97438 * 6 5 4 10 10 O 1.35606 * 120.19875 * 180.02562 * 9 6 5 11 11 C 1.42897 * 117.00005 * 180.02562 * 10 9 6 12 12 C 1.50700 * 109.47036 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00238 * 0.02562 * 12 11 10 14 14 O 1.34227 * 119.99693 * 179.97438 * 12 11 10 15 15 C 1.45204 * 116.99604 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46915 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99933 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99836 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99756 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00111 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99783 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99984 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99730 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47121 * 90.00407 * 23 21 19 25 25 H 1.48508 * 109.46868 * 210.00193 * 23 21 19 26 26 H 1.48495 * 109.47174 * 329.99578 * 23 21 19 27 27 C 1.38425 * 119.60190 * 0.02562 * 9 6 5 28 28 H 1.09002 * 109.46854 * 60.00066 * 1 2 3 29 29 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46891 * 300.00514 * 1 2 3 31 31 H 1.07996 * 119.79661 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.96992 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.00783 * 359.71843 * 7 6 5 34 34 H 1.08998 * 109.47218 * 300.00047 * 11 10 9 35 35 H 1.09004 * 109.47077 * 60.00351 * 11 10 9 36 36 H 1.09001 * 109.47544 * 300.00296 * 15 14 12 37 37 H 1.09001 * 109.47203 * 60.00796 * 15 14 12 38 38 H 0.96992 * 120.00278 * 0.02562 * 18 16 15 39 39 H 0.97008 * 120.00048 * 179.97438 * 22 21 19 40 40 H 1.07996 * 120.03333 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2830 2.3747 0.0005 5 6 1.8902 3.5965 0.0011 6 6 3.2891 3.6851 0.0005 7 6 3.9435 4.9957 0.0072 8 8 5.1547 5.0690 0.0119 9 6 4.0613 2.5096 0.0000 10 8 5.4153 2.5829 0.0000 11 6 6.1319 1.3466 -0.0011 12 6 7.6131 1.6245 -0.0016 13 8 8.0139 2.7644 -0.0005 14 8 8.4870 0.6058 -0.0021 15 6 9.8982 0.9479 -0.0031 16 6 10.7212 -0.3146 -0.0030 17 8 10.1723 -1.3963 -0.0026 18 7 12.0669 -0.2417 -0.0043 19 6 12.8156 -1.3903 -0.0047 20 1 12.3270 -2.3534 -0.0044 21 6 14.2031 -1.3151 -0.0056 22 7 14.7976 -0.1433 -0.0065 23 14 15.2231 -2.8801 -0.0068 24 1 15.4926 -3.2941 -1.4072 25 1 16.5097 -2.6329 0.6926 26 1 14.4782 -3.9571 0.6933 27 6 3.4306 1.2773 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2049 2.3112 0.0014 32 1 1.2925 4.4959 0.0019 33 1 3.3480 5.8967 0.0080 34 1 5.8696 0.7738 0.8883 35 1 5.8696 0.7754 -0.8917 36 1 10.1297 1.5329 -0.8933 37 1 10.1309 1.5328 0.8867 38 1 12.5058 0.6232 -0.0050 39 1 15.7663 -0.0908 -0.0067 40 1 4.0167 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734631547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:07 Heat of formation + Delta-G solvation = -187.018693 kcal Electronic energy + Delta-G solvation = -27447.065806 eV Core-core repulsion = 23001.231914 eV Total energy + Delta-G solvation = -4445.833892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21899 -40.36248 -39.54789 -38.56922 -38.04968 -36.87189 -36.02471 -34.00350 -31.58650 -31.39877 -30.90006 -29.45700 -28.01563 -27.73280 -24.63026 -24.47886 -23.13743 -21.39990 -20.94505 -19.59428 -19.25920 -18.07460 -17.72561 -17.37813 -17.04225 -17.00496 -16.56296 -16.32719 -16.15015 -15.70195 -15.50545 -15.25065 -14.80215 -14.54025 -14.30359 -14.21760 -13.89543 -13.83094 -13.32295 -13.02784 -12.94231 -12.82624 -12.51006 -12.35420 -11.94890 -11.85637 -11.62021 -11.52859 -11.15008 -11.12664 -10.44775 -10.43235 -10.39386 -10.27901 -9.78986 -9.60538 -9.14140 -8.58869 -8.53307 -8.08365 -6.49567 -3.91787 0.38196 0.90534 1.92910 2.22101 2.26759 2.64633 3.13710 3.22490 3.25576 3.32242 3.35911 3.73334 4.02908 4.09912 4.17056 4.43615 4.45653 4.53629 4.62422 4.67854 4.74847 4.83393 4.90995 4.93503 5.00072 5.05317 5.15074 5.15395 5.52778 5.59957 5.69329 5.70880 5.80370 5.97404 6.04434 6.54510 6.68922 6.88079 7.43967 7.48094 7.79957 7.95193 8.48286 9.07037 9.39211 9.88834 10.67541 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.001937 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.760426 B =14451.224665 C =15813.231306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.202 3.798 4 C -0.259 4.259 5 C 0.008 3.992 6 C -0.260 4.260 7 C 0.371 3.629 8 O -0.434 6.434 9 C 0.227 3.773 10 O -0.258 6.258 11 C 0.062 3.938 12 C 0.458 3.542 13 O -0.480 6.480 14 O -0.323 6.323 15 C 0.063 3.937 16 C 0.438 3.562 17 O -0.577 6.577 18 N -0.551 5.551 19 C -0.303 4.303 20 H 0.106 0.894 21 C 0.025 3.975 22 N -0.896 5.896 23 Si 0.935 3.065 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.268 1.268 27 C -0.264 4.264 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.814 7.461 0.014 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.154 3.846 4 C -0.278 4.278 5 C -0.010 4.010 6 C -0.262 4.262 7 C 0.228 3.772 8 O -0.305 6.305 9 C 0.179 3.821 10 O -0.168 6.168 11 C -0.014 4.014 12 C 0.298 3.702 13 O -0.365 6.365 14 O -0.238 6.238 15 C -0.014 4.014 16 C 0.223 3.777 17 O -0.461 6.461 18 N -0.189 5.189 19 C -0.432 4.432 20 H 0.124 0.876 21 C -0.178 4.178 22 N -0.536 5.536 23 Si 0.761 3.239 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.193 1.193 27 C -0.284 4.284 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.116 0.884 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.912 7.127 0.023 30.750 hybrid contribution 0.429 -0.258 -0.013 0.501 sum -29.484 6.868 0.010 30.273 Atomic orbital electron populations 1.23181 0.77526 1.04533 1.01778 1.86071 1.22124 1.26786 1.87150 1.18969 0.91463 0.84419 0.89700 1.20880 1.00551 0.92078 1.14265 1.20719 0.92061 0.97830 0.90403 1.20360 0.93574 0.94416 1.17839 1.23604 0.90137 0.90979 0.72456 1.90709 1.17074 1.89665 1.33030 1.18911 0.82063 0.92540 0.88597 1.86308 1.14448 1.29887 1.86207 1.22020 0.87219 0.86143 1.06040 1.22712 0.88997 0.83996 0.74454 1.90758 1.79884 1.22669 1.43228 1.86479 1.17657 1.36331 1.83326 1.22813 0.76436 0.98346 1.03845 1.19279 0.83264 0.89064 0.86085 1.90561 1.71112 1.29043 1.55368 1.41699 1.03358 1.10112 1.63697 1.19727 0.87972 0.87224 1.48263 0.87584 1.25328 0.97002 0.98604 0.96869 1.69617 1.10906 1.23610 1.49511 0.85784 0.78675 0.80911 0.78490 1.20256 1.20810 1.19279 1.20486 0.92991 0.97829 1.17051 0.92145 0.87789 0.92138 0.84656 0.83974 0.88424 0.87028 0.87037 0.89260 0.89268 0.77094 0.91599 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.31 -2.43 10.48 -18.71 -0.20 -2.62 16 3 C 0.20 1.69 6.69 -39.01 -0.26 1.42 16 4 C -0.26 -1.61 8.96 -39.85 -0.36 -1.97 16 5 C 0.01 0.05 9.73 -39.51 -0.38 -0.33 16 6 C -0.26 -2.47 5.88 -104.94 -0.62 -3.08 16 7 C 0.37 3.72 11.43 34.05 0.39 4.11 16 8 O -0.43 -6.82 15.98 -16.43 -0.26 -7.08 16 9 C 0.23 2.58 6.70 -38.60 -0.26 2.32 16 10 O -0.26 -3.64 7.74 -48.81 -0.38 -4.02 16 11 C 0.06 0.76 5.33 36.01 0.19 0.95 16 12 C 0.46 7.66 8.03 36.01 0.29 7.95 16 13 O -0.48 -9.48 16.25 -25.48 -0.41 -9.89 16 14 O -0.32 -6.06 9.76 -45.90 -0.45 -6.50 16 15 C 0.06 1.23 5.94 36.01 0.21 1.44 16 16 C 0.44 10.67 7.86 -10.98 -0.09 10.58 16 17 O -0.58 -16.06 16.08 -14.11 -0.23 -16.29 16 18 N -0.55 -14.08 5.29 -10.96 -0.06 -14.14 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 20 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 22 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 23 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.26 -2.55 8.97 -39.33 -0.35 -2.91 16 28 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.15 7.64 -51.93 -0.40 -0.25 16 31 H 0.14 0.47 6.26 -52.49 -0.33 0.15 16 32 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 33 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 35 H 0.11 1.09 7.66 -51.93 -0.40 0.69 16 36 H 0.09 1.59 8.13 -51.93 -0.42 1.17 16 37 H 0.09 1.59 8.13 -51.93 -0.42 1.17 16 38 H 0.40 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.15 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -37.99 363.07 -5.49 -43.48 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.20 Total: 5.72 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -0.48 Total: 13.59 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.67 Total: -37.63 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -1.92 Total: -46.41 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.99 -5.49 -43.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734631547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.543 kcal (2) G-P(sol) polarization free energy of solvation -37.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds