Wall clock time and date at job start Tue Mar 31 2020 20:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35669 * 117.00025 * 2 1 4 4 C 1.39280 * 119.83363 * 0.02562 * 3 2 1 5 5 C 1.36430 * 120.40707 * 179.97438 * 4 3 2 6 6 C 1.40177 * 120.05451 * 0.02562 * 5 4 3 7 7 C 1.46487 * 120.15939 * 180.27589 * 6 5 4 8 8 O 1.21341 * 119.99630 * 179.71997 * 7 6 5 9 9 C 1.40645 * 119.66945 * 359.97438 * 6 5 4 10 10 O 1.35606 * 120.19875 * 180.02562 * 9 6 5 11 11 C 1.42897 * 117.00005 * 180.02562 * 10 9 6 12 12 C 1.50700 * 109.47036 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00238 * 0.02562 * 12 11 10 14 14 O 1.34227 * 119.99693 * 179.97438 * 12 11 10 15 15 C 1.45204 * 116.99604 * 179.97438 * 14 12 11 16 16 C 1.50704 * 109.46915 * 179.97438 * 15 14 12 17 17 O 1.21295 * 119.99933 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99836 * 179.97438 * 16 15 14 19 19 C 1.37102 * 119.99756 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00111 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99783 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99984 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99730 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47121 * 90.00407 * 23 21 19 25 25 H 1.48508 * 109.46868 * 210.00193 * 23 21 19 26 26 H 1.48495 * 109.47174 * 329.99578 * 23 21 19 27 27 C 1.38425 * 119.60190 * 0.02562 * 9 6 5 28 28 H 1.09002 * 109.46854 * 60.00066 * 1 2 3 29 29 H 1.08996 * 109.47537 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46891 * 300.00514 * 1 2 3 31 31 H 1.07996 * 119.79661 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.96992 * 180.02562 * 5 4 3 33 33 H 1.07998 * 120.00783 * 359.71843 * 7 6 5 34 34 H 1.08998 * 109.47218 * 300.00047 * 11 10 9 35 35 H 1.09004 * 109.47077 * 60.00351 * 11 10 9 36 36 H 1.09001 * 109.47544 * 300.00296 * 15 14 12 37 37 H 1.09001 * 109.47203 * 60.00796 * 15 14 12 38 38 H 0.96992 * 120.00278 * 0.02562 * 18 16 15 39 39 H 0.97008 * 120.00048 * 179.97438 * 22 21 19 40 40 H 1.07996 * 120.03333 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2830 2.3747 0.0005 5 6 1.8902 3.5965 0.0011 6 6 3.2891 3.6851 0.0005 7 6 3.9435 4.9957 0.0072 8 8 5.1547 5.0690 0.0119 9 6 4.0613 2.5096 0.0000 10 8 5.4153 2.5829 0.0000 11 6 6.1319 1.3466 -0.0011 12 6 7.6131 1.6245 -0.0016 13 8 8.0139 2.7644 -0.0005 14 8 8.4870 0.6058 -0.0021 15 6 9.8982 0.9479 -0.0031 16 6 10.7212 -0.3146 -0.0030 17 8 10.1723 -1.3963 -0.0026 18 7 12.0669 -0.2417 -0.0043 19 6 12.8156 -1.3903 -0.0047 20 1 12.3270 -2.3534 -0.0044 21 6 14.2031 -1.3151 -0.0056 22 7 14.7976 -0.1433 -0.0065 23 14 15.2231 -2.8801 -0.0068 24 1 15.4926 -3.2941 -1.4072 25 1 16.5097 -2.6329 0.6926 26 1 14.4782 -3.9571 0.6933 27 6 3.4306 1.2773 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2049 2.3112 0.0014 32 1 1.2925 4.4959 0.0019 33 1 3.3480 5.8967 0.0080 34 1 5.8696 0.7738 0.8883 35 1 5.8696 0.7754 -0.8917 36 1 10.1297 1.5329 -0.8933 37 1 10.1309 1.5328 0.8867 38 1 12.5058 0.6232 -0.0050 39 1 15.7663 -0.0908 -0.0067 40 1 4.0167 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734631547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:06 Heat of formation + Delta-G solvation = -213.123843 kcal Electronic energy + Delta-G solvation = -27448.197810 eV Core-core repulsion = 23001.231914 eV Total energy + Delta-G solvation = -4446.965896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09013 -41.53049 -40.33602 -40.01520 -39.37607 -37.73019 -37.32749 -36.06496 -33.45357 -32.17970 -31.76689 -30.60083 -29.19139 -28.32401 -26.57524 -25.10151 -23.96300 -22.25353 -21.97577 -21.48068 -20.12281 -19.91421 -18.92567 -18.34178 -18.26052 -17.89583 -17.48520 -17.31646 -17.06533 -17.04098 -16.61313 -16.44666 -15.93706 -15.82731 -15.68813 -15.41251 -15.02394 -14.93433 -14.52851 -14.08861 -13.89785 -13.71305 -13.57665 -13.46252 -13.26559 -13.18841 -12.95381 -12.58197 -12.49597 -12.12760 -11.99220 -11.98283 -11.73494 -11.71173 -11.60094 -10.57754 -10.56236 -10.14738 -9.77319 -9.22436 -8.54216 -6.05378 -0.25827 0.31425 0.77268 0.89284 1.34630 1.42194 1.55570 1.59275 1.83267 2.10383 2.23953 2.35859 2.74634 2.94168 3.10943 3.43764 3.44956 3.69615 3.79095 3.85127 3.98462 3.99673 4.09467 4.11396 4.17020 4.27827 4.41381 4.44483 4.46821 4.56262 4.79752 5.06653 5.11161 5.14974 5.25406 5.35068 5.45663 5.85983 6.01253 6.31392 6.40155 6.50628 6.75092 6.99899 7.36206 7.89041 8.62729 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.001937 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.760426 B =14451.224665 C =15813.231306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.196 3.804 4 C -0.252 4.252 5 C 0.027 3.973 6 C -0.283 4.283 7 C 0.376 3.624 8 O -0.503 6.503 9 C 0.199 3.801 10 O -0.290 6.290 11 C 0.068 3.932 12 C 0.461 3.539 13 O -0.514 6.514 14 O -0.334 6.334 15 C 0.072 3.928 16 C 0.437 3.563 17 O -0.616 6.616 18 N -0.556 5.556 19 C -0.339 4.339 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.915 5.915 23 Si 1.001 2.999 24 H -0.269 1.269 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.280 4.280 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.154 0.846 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.400 0.600 39 H 0.281 0.719 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.510 7.809 -0.004 34.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.149 3.851 4 C -0.271 4.271 5 C 0.009 3.991 6 C -0.285 4.285 7 C 0.238 3.762 8 O -0.379 6.379 9 C 0.152 3.848 10 O -0.202 6.202 11 C -0.008 4.008 12 C 0.304 3.696 13 O -0.401 6.401 14 O -0.250 6.250 15 C -0.005 4.005 16 C 0.224 3.776 17 O -0.503 6.503 18 N -0.194 5.194 19 C -0.468 4.468 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.555 5.555 23 Si 0.823 3.177 24 H -0.194 1.194 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.300 4.300 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.234 0.766 39 H 0.091 0.909 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -32.654 7.496 0.003 33.504 hybrid contribution 1.043 -0.372 -0.008 1.107 sum -31.611 7.124 -0.004 32.404 Atomic orbital electron populations 1.23508 0.75333 1.05984 1.03210 1.86050 1.24453 1.26832 1.86888 1.19172 0.91232 0.85529 0.89205 1.21302 1.02138 0.91179 1.12438 1.21202 0.90586 0.99616 0.87686 1.20710 0.95111 0.93748 1.18939 1.24482 0.89374 0.92862 0.69459 1.90698 1.20036 1.90499 1.36686 1.19285 0.81021 0.94063 0.90434 1.86259 1.16248 1.30437 1.87229 1.22134 0.83932 0.86391 1.08304 1.23542 0.90284 0.82989 0.72798 1.90738 1.80565 1.23856 1.44974 1.86479 1.17352 1.37488 1.83663 1.22585 0.76771 0.95602 1.05565 1.19984 0.83128 0.90137 0.84353 1.90525 1.71814 1.31105 1.56843 1.41741 1.03925 1.09852 1.63848 1.19743 0.88985 0.87276 1.50754 0.89592 1.26181 0.97409 1.01940 0.95579 1.69680 1.11602 1.25212 1.48983 0.84816 0.77150 0.76871 0.78822 1.19397 1.19426 1.19440 1.20545 0.94098 0.97314 1.17998 0.90638 0.86583 0.90629 0.81286 0.79417 0.83025 0.84616 0.84618 0.87476 0.87496 0.76557 0.90921 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.80 113.37 1.11 1.17 16 2 O -0.33 -4.57 10.48 -89.86 -0.94 -5.51 16 3 C 0.20 2.91 6.69 22.64 0.15 3.06 16 4 C -0.25 -2.21 8.96 22.10 0.20 -2.01 16 5 C 0.03 0.22 9.73 22.32 0.22 0.44 16 6 C -0.28 -4.98 5.88 -20.07 -0.12 -5.10 16 7 C 0.38 7.17 11.43 69.97 0.80 7.97 16 8 O -0.50 -16.42 15.98 17.76 0.28 -16.13 16 9 C 0.20 4.54 6.70 22.90 0.15 4.69 16 10 O -0.29 -8.50 7.74 -60.20 -0.47 -8.97 16 11 C 0.07 1.71 5.33 71.24 0.38 2.09 16 12 C 0.46 15.83 8.03 71.24 0.57 16.40 16 13 O -0.51 -21.01 16.25 28.39 0.46 -20.55 16 14 O -0.33 -12.77 9.76 -45.04 -0.44 -13.21 16 15 C 0.07 2.84 5.94 71.24 0.42 3.27 16 16 C 0.44 21.86 7.86 87.66 0.69 22.55 16 17 O -0.62 -35.40 16.08 15.72 0.25 -35.15 16 18 N -0.56 -29.14 5.29 -306.98 -1.62 -30.76 16 19 C -0.34 -19.24 9.68 84.04 0.81 -18.42 16 20 H 0.09 5.15 7.16 -2.91 -0.02 5.13 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.91 -49.30 13.05 21.66 0.28 -49.01 16 23 Si 1.00 42.45 29.55 68.60 2.03 44.48 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C -0.28 -5.31 8.97 22.43 0.20 -5.11 16 28 H 0.08 0.11 7.65 -2.39 -0.02 0.09 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.19 16 30 H 0.08 0.10 7.64 -2.38 -0.02 0.09 16 31 H 0.17 0.30 6.26 -2.91 -0.02 0.29 16 32 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.14 2.67 7.66 -2.39 -0.02 2.65 16 35 H 0.14 2.67 7.66 -2.38 -0.02 2.65 16 36 H 0.11 3.86 8.13 -2.39 -0.02 3.84 16 37 H 0.11 3.86 8.13 -2.39 -0.02 3.84 16 38 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 39 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 40 H 0.15 2.56 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -86.80 363.07 6.28 -80.52 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.38 Total: 23.39 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: 6.06 Total: 30.91 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -1.34 Total: -79.78 kcal Atomic # 8 Polarization: -98.68 SS G_CDS: -0.85 Total: -99.53 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -86.80 6.28 -80.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734631547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.608 kcal (2) G-P(sol) polarization free energy of solvation -86.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds