Wall clock time and date at job start Tue Mar 31 2020 20:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38332 * 119.94359 * 269.72776 * 17 14 12 19 19 C 1.38294 * 120.23709 * 179.72473 * 18 17 14 20 20 C 1.38046 * 120.11706 * 0.55269 * 19 18 17 21 21 C 1.39283 * 119.87797 * 359.71989 * 20 19 18 22 22 C 1.48466 * 120.11279 * 180.02562 * 21 20 19 23 23 N 1.34048 * 126.67129 * 179.67156 * 22 21 20 24 24 N 1.28986 * 107.26605 * 179.86991 * 23 22 21 25 25 N 1.28729 * 108.94875 * 0.39512 * 24 23 22 26 26 H 0.96994 * 125.34889 * 179.78118 * 25 24 23 27 27 N 1.28881 * 109.30999 * 359.74821 * 25 24 23 28 28 C 1.38007 * 119.94052 * 90.00197 * 17 14 12 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.08000 * 119.88081 * 359.97438 * 18 17 14 37 37 H 1.08001 * 119.94052 * 180.27547 * 19 18 17 38 38 H 1.08001 * 120.05871 * 179.70547 * 20 19 18 39 39 H 1.08005 * 120.05824 * 0.02562 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.2387 0.7828 -0.9226 19 6 6.5504 0.6032 -0.5231 20 6 7.2774 -0.4710 -0.9956 21 6 6.6857 -1.3779 -1.8716 22 6 7.4626 -2.5353 -2.3826 23 7 7.0253 -3.4859 -3.2204 24 7 8.0041 -4.3026 -3.4171 25 7 9.0218 -3.9074 -2.7352 26 1 9.8846 -4.3498 -2.7070 27 7 8.7147 -2.8311 -2.0962 28 6 5.3622 -1.1953 -2.2663 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 4.6749 1.6272 -0.5544 37 1 7.0082 1.3070 0.1562 38 1 8.3033 -0.6078 -0.6868 39 1 4.8988 -1.8954 -2.9458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:52 Heat of formation + Delta-G solvation = 84.219760 kcal Electronic energy + Delta-G solvation = -27132.585385 eV Core-core repulsion = 23205.851648 eV Total energy + Delta-G solvation = -3926.733737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.62683 -39.17423 -36.73827 -36.17048 -35.28903 -34.58955 -33.77595 -32.62463 -31.25551 -30.64791 -29.09394 -25.53401 -25.19232 -25.01986 -24.63642 -22.83922 -21.91483 -20.73786 -19.46948 -18.49644 -17.48814 -17.31572 -16.84713 -16.44109 -15.92799 -15.59207 -15.16202 -14.93049 -14.45350 -14.14720 -13.69050 -13.48426 -13.30315 -13.13206 -12.69958 -12.54556 -12.19584 -11.99017 -11.81364 -11.59990 -11.56056 -11.42668 -11.36002 -11.31288 -11.21779 -11.16913 -10.97543 -10.88441 -10.55175 -10.44987 -10.21557 -10.06979 -9.38663 -9.22160 -8.79012 -8.50090 -7.97913 -6.11752 -4.20163 0.54206 0.86042 1.04678 1.13525 2.03708 2.19308 3.24016 3.29952 3.31454 3.44962 3.49083 3.76054 4.02271 4.31201 4.33840 4.70944 4.91246 4.96076 5.03314 5.18863 5.24793 5.36474 5.48687 5.62312 5.64699 5.86465 6.09178 6.16809 6.18899 6.22405 6.28408 6.34787 6.67215 6.76106 6.86475 6.88700 7.09773 7.43363 7.60218 7.75801 7.96305 8.02644 8.23326 8.82958 9.46354 10.93131 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.004275 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.220798 B = 6548.083937 C = 7498.766947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.061 0.939 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.978 5.978 13 C 0.103 3.897 14 S 2.684 3.316 15 O -0.971 6.971 16 O -0.956 6.956 17 C -0.669 4.669 18 C 0.017 3.983 19 C -0.142 4.142 20 C -0.033 4.033 21 C -0.051 4.051 22 C 0.228 3.772 23 N -0.265 5.265 24 N -0.049 5.049 25 N -0.230 5.230 26 H 0.475 0.525 27 N -0.297 5.297 28 C 0.022 3.978 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.265 0.735 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.055 -5.329 -6.873 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.079 0.921 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.818 5.818 13 C -0.043 4.043 14 S 2.773 3.227 15 O -0.961 6.961 16 O -0.947 6.947 17 C -0.753 4.753 18 C -0.003 4.003 19 C -0.161 4.161 20 C -0.053 4.053 21 C -0.055 4.055 22 C -0.052 4.052 23 N -0.138 5.138 24 N -0.044 5.044 25 N -0.076 5.076 26 H 0.329 0.671 27 N -0.149 5.149 28 C 0.000 4.000 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.154 0.846 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.801 -5.311 -7.805 16.721 hybrid contribution 1.544 -0.785 1.777 2.481 sum 15.345 -6.096 -6.028 17.578 Atomic orbital electron populations 1.22056 0.97639 0.99832 1.00894 1.18803 0.92068 0.92814 0.79986 0.92092 1.21357 1.32012 1.13238 0.90161 0.91905 1.24887 0.94900 0.94931 0.98863 1.69866 1.36068 1.22508 1.23946 0.86632 0.79160 0.79800 0.82241 1.21199 1.20245 1.20317 1.57433 1.62715 1.21733 1.39969 1.21274 0.99324 0.81580 1.02150 1.02204 0.73245 0.73830 0.73407 1.93531 1.85889 1.75638 1.41061 1.93561 1.83533 1.31250 1.86328 1.31397 1.27097 1.04405 1.12404 1.21205 0.94483 0.95648 0.88982 1.21227 0.94770 0.98625 1.01433 1.21368 0.99785 0.91936 0.92244 1.17211 0.93315 0.92762 1.02185 1.23632 0.88173 0.97106 0.96273 1.76147 1.19960 1.02148 1.15502 1.78921 0.91351 1.20308 1.13826 1.47709 1.15180 1.16388 1.28279 0.67135 1.74902 1.16592 1.03544 1.19856 1.20867 0.91852 0.93839 0.93411 0.96691 0.94754 0.88805 0.92542 0.93394 0.92841 0.89997 0.83319 0.84283 0.84585 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.97 37.16 0.33 -3.00 16 2 C 0.27 6.25 2.62 -69.09 -0.18 6.07 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.53 -13.15 7.99 -34.44 -0.28 -13.42 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.98 -19.81 3.06 -115.85 -0.35 -20.17 16 13 C 0.10 1.81 9.28 59.85 0.56 2.36 16 14 S 2.68 51.82 5.64 -107.50 -0.61 51.21 16 15 O -0.97 -19.38 16.35 -57.17 -0.93 -20.31 16 16 O -0.96 -20.63 15.83 -57.17 -0.91 -21.53 16 17 C -0.67 -11.39 5.97 -39.63 -0.24 -11.63 16 18 C 0.02 0.26 9.52 -39.53 -0.38 -0.11 16 19 C -0.14 -1.85 10.03 -39.63 -0.40 -2.25 16 20 C -0.03 -0.42 9.70 -39.26 -0.38 -0.80 16 21 C -0.05 -0.73 5.88 -104.89 -0.62 -1.34 16 22 C 0.23 3.12 7.94 -156.30 -1.24 1.88 16 23 N -0.26 -3.78 12.23 32.16 0.39 -3.38 16 24 N -0.05 -0.56 13.47 60.35 0.81 0.25 16 25 N -0.23 -1.95 7.90 60.35 0.48 -1.48 16 26 H 0.47 1.54 8.96 -340.37 -3.05 -1.51 16 27 N -0.30 -3.34 12.08 32.17 0.39 -2.95 16 28 C 0.02 0.34 9.17 -39.27 -0.36 -0.02 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 32 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.82 7.79 -51.92 -0.40 0.42 16 35 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 36 H 0.15 2.33 7.60 -52.49 -0.40 1.93 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.14 1.38 7.88 -52.49 -0.41 0.96 16 39 H 0.15 2.30 7.44 -52.48 -0.39 1.91 16 LS Contribution 348.45 15.07 5.25 5.25 Total: -1.00 -32.09 348.45 -10.03 -42.11 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.88 Total: -0.43 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.27 Total: -20.63 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 2.34 Total: -50.67 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.84 Total: -41.84 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.61 Total: 51.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.09 -10.03 -42.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.331 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds