Wall clock time and date at job start Tue Mar 31 2020 20:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 C 1.76203 * 107.21595 * 89.99875 * 14 12 2 18 18 C 1.38332 * 119.94359 * 269.72776 * 17 14 12 19 19 C 1.38294 * 120.23709 * 179.72473 * 18 17 14 20 20 C 1.38046 * 120.11706 * 0.55269 * 19 18 17 21 21 C 1.39283 * 119.87797 * 359.71989 * 20 19 18 22 22 C 1.48466 * 120.11279 * 180.02562 * 21 20 19 23 23 N 1.34048 * 126.67129 * 179.67156 * 22 21 20 24 24 N 1.28986 * 107.26605 * 179.86991 * 23 22 21 25 25 N 1.28729 * 108.94875 * 0.39512 * 24 23 22 26 26 H 0.96994 * 125.34889 * 179.78118 * 25 24 23 27 27 N 1.28881 * 109.30999 * 359.74821 * 25 24 23 28 28 C 1.38007 * 119.94052 * 90.00197 * 17 14 12 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.08000 * 119.88081 * 359.97438 * 18 17 14 37 37 H 1.08001 * 119.94052 * 180.27547 * 19 18 17 38 38 H 1.08001 * 120.05871 * 179.70547 * 20 19 18 39 39 H 1.08005 * 120.05824 * 0.02562 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 6 4.6444 -0.1180 -1.7880 18 6 5.2387 0.7828 -0.9226 19 6 6.5504 0.6032 -0.5231 20 6 7.2774 -0.4710 -0.9956 21 6 6.6857 -1.3779 -1.8716 22 6 7.4626 -2.5353 -2.3826 23 7 7.0253 -3.4859 -3.2204 24 7 8.0041 -4.3026 -3.4171 25 7 9.0218 -3.9074 -2.7352 26 1 9.8846 -4.3498 -2.7070 27 7 8.7147 -2.8311 -2.0962 28 6 5.3622 -1.1953 -2.2663 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 4.6749 1.6272 -0.5544 37 1 7.0082 1.3070 0.1562 38 1 8.3033 -0.6078 -0.6868 39 1 4.8988 -1.8954 -2.9458 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:51 Heat of formation + Delta-G solvation = 61.469283 kcal Electronic energy + Delta-G solvation = -27133.571920 eV Core-core repulsion = 23205.851648 eV Total energy + Delta-G solvation = -3927.720271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.52883 -40.29416 -38.34352 -37.87300 -36.89642 -35.51834 -34.74469 -34.48493 -32.39225 -31.70305 -30.89131 -27.21890 -26.99507 -25.96571 -25.65587 -23.98243 -22.99327 -22.50655 -20.40117 -19.84772 -18.86453 -18.45303 -18.27299 -18.19734 -17.13856 -17.09460 -16.56604 -16.29756 -15.88425 -15.24372 -15.10581 -14.86193 -14.72690 -14.44641 -14.28409 -13.69614 -13.49037 -13.40457 -13.36863 -13.18230 -13.12306 -12.95843 -12.70155 -12.66177 -12.55208 -12.49036 -12.30995 -12.20360 -12.14990 -12.09264 -11.92695 -11.75394 -11.12775 -10.45999 -10.43524 -9.88892 -9.63170 -8.05625 -6.19750 -0.60704 -0.44277 -0.13013 0.12108 1.14681 1.36629 1.47621 1.49029 1.55770 2.05128 2.45930 2.50585 2.54059 2.82266 3.06307 3.22816 3.35843 3.77630 3.89448 3.96912 4.14001 4.20795 4.29848 4.40172 4.52230 4.73716 4.78369 4.83205 4.95532 5.03652 5.05008 5.13851 5.18714 5.19093 5.28214 5.57957 5.64546 5.66931 5.73344 5.87877 6.13308 6.32566 6.88534 7.04814 7.49487 8.98670 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.004275 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.220798 B = 6548.083937 C = 7498.766947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.271 3.729 3 H 0.035 0.965 4 C -0.531 4.531 5 H 0.065 0.935 6 C 0.024 3.976 7 N -0.914 5.914 8 Si 0.951 3.049 9 H -0.287 1.287 10 H -0.273 1.273 11 H -0.272 1.272 12 N -0.986 5.986 13 C 0.096 3.904 14 S 2.693 3.307 15 O -0.982 6.982 16 O -0.987 6.987 17 C -0.677 4.677 18 C -0.006 4.006 19 C -0.132 4.132 20 C -0.020 4.020 21 C -0.051 4.051 22 C 0.211 3.789 23 N -0.296 5.296 24 N -0.053 5.053 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.285 5.285 28 C 0.009 3.991 29 H 0.021 0.979 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.873 -6.768 -6.292 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.167 3.833 3 H 0.052 0.948 4 C -0.570 4.570 5 H 0.083 0.917 6 C -0.177 4.177 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.213 1.213 10 H -0.198 1.198 11 H -0.197 1.197 12 N -0.825 5.825 13 C -0.050 4.050 14 S 2.786 3.214 15 O -0.973 6.973 16 O -0.978 6.978 17 C -0.765 4.765 18 C -0.026 4.026 19 C -0.150 4.150 20 C -0.040 4.040 21 C -0.056 4.056 22 C -0.069 4.069 23 N -0.168 5.168 24 N -0.048 5.048 25 N -0.047 5.047 26 H 0.356 0.644 27 N -0.138 5.138 28 C -0.012 4.012 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.192 0.808 38 H 0.187 0.813 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.589 -6.779 -7.258 19.335 hybrid contribution 0.856 -0.402 1.536 1.804 sum 17.446 -7.181 -5.722 19.714 Atomic orbital electron populations 1.21956 0.97637 1.00165 1.00188 1.18500 0.92101 0.91760 0.80955 0.94758 1.21569 1.31639 1.13107 0.90717 0.91674 1.25569 0.95153 0.95529 1.01415 1.69992 1.37190 1.23766 1.24365 0.85723 0.78783 0.78749 0.79027 1.21288 1.19845 1.19720 1.57319 1.63728 1.22630 1.38862 1.21464 1.00741 0.80284 1.02475 1.01593 0.73922 0.72896 0.72975 1.93505 1.86582 1.75606 1.41571 1.93514 1.84571 1.33047 1.86665 1.30846 1.25386 1.06014 1.14277 1.21336 0.96096 0.95574 0.89641 1.21595 0.93369 0.99098 1.00966 1.21747 1.00988 0.90654 0.90648 1.17350 0.92757 0.93357 1.02094 1.23533 0.88949 0.97305 0.97113 1.76136 1.21273 1.02943 1.16497 1.78871 0.91621 1.20038 1.14249 1.47790 1.15562 1.15200 1.26186 0.64414 1.74850 1.15400 1.03962 1.19568 1.20867 0.92877 0.93589 0.93894 0.95950 0.93804 0.90931 0.92668 0.92280 0.90804 0.90315 0.84180 0.80843 0.81303 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.58 8.97 71.98 0.65 -5.93 16 2 C 0.27 13.01 2.62 44.24 0.12 13.13 16 3 H 0.03 1.83 6.91 -2.39 -0.02 1.82 16 4 C -0.53 -26.53 7.99 25.60 0.20 -26.33 16 5 H 0.07 3.16 7.33 -2.91 -0.02 3.14 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -49.37 11.32 21.45 0.24 -49.13 16 8 Si 0.95 40.66 29.54 68.60 2.03 42.68 16 9 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 N -0.99 -40.52 3.06 -520.45 -1.59 -42.11 16 13 C 0.10 3.33 9.28 127.77 1.19 4.52 16 14 S 2.69 106.58 5.64 -56.49 -0.32 106.27 16 15 O -0.98 -39.82 16.35 -128.00 -2.09 -41.91 16 16 O -0.99 -44.39 15.83 -128.00 -2.03 -46.42 16 17 C -0.68 -23.16 5.97 22.24 0.13 -23.02 16 18 C -0.01 -0.20 9.52 22.31 0.21 0.01 16 19 C -0.13 -3.11 10.03 22.24 0.22 -2.88 16 20 C -0.02 -0.45 9.70 22.48 0.22 -0.23 16 21 C -0.05 -1.38 5.88 -20.04 -0.12 -1.50 16 22 C 0.21 5.31 7.94 137.38 1.09 6.40 16 23 N -0.30 -8.01 12.23 -52.18 -0.64 -8.65 16 24 N -0.05 -1.11 13.47 37.02 0.50 -0.61 16 25 N -0.20 -2.71 7.90 37.02 0.29 -2.42 16 26 H 0.50 1.41 8.96 -347.54 -3.12 -1.70 16 27 N -0.29 -5.46 12.08 -52.13 -0.63 -6.09 16 28 C 0.01 0.29 9.17 22.47 0.21 0.50 16 29 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 1.91 7.67 -2.39 -0.02 1.89 16 31 H 0.07 3.74 6.07 -2.39 -0.01 3.72 16 32 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.24 7.79 -2.38 -0.02 2.22 16 35 H 0.08 2.77 7.02 -2.39 -0.02 2.76 16 36 H 0.14 4.53 7.60 -2.91 -0.02 4.51 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.17 2.62 7.88 -2.91 -0.02 2.59 16 39 H 0.15 4.53 7.44 -2.91 -0.02 4.50 16 Total: -1.00 -69.30 348.45 -1.67 -70.97 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -2.00 Total: 11.11 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.57 Total: -33.69 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -1.83 Total: -109.01 kcal Atomic # 8 Polarization: -84.21 SS G_CDS: -4.12 Total: -88.33 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 106.58 SS G_CDS: -0.32 Total: 106.27 kcal Total: -69.30 -1.67 -70.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.440 kcal (2) G-P(sol) polarization free energy of solvation -69.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds