Wall clock time and date at job start Tue Mar 31 2020 20:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46623 * 2 1 4 4 C 1.50697 * 109.46950 * 240.00522 * 2 1 3 5 5 H 1.07999 * 119.99528 * 239.99971 * 4 2 1 6 6 C 1.37876 * 120.00226 * 59.99463 * 4 2 1 7 7 N 1.31513 * 120.00212 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99805 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47436 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47313 * 120.00229 * 8 6 4 11 11 H 1.48507 * 109.47190 * 239.99987 * 8 6 4 12 12 N 1.46494 * 109.47130 * 119.99921 * 2 1 3 13 13 S 1.65596 * 120.00309 * 264.99709 * 12 2 1 14 14 O 1.42100 * 104.27958 * 308.93493 * 13 12 2 15 15 O 1.42099 * 104.27929 * 181.07257 * 13 12 2 16 16 C 1.81405 * 104.44842 * 65.00247 * 13 12 2 17 17 C 1.50692 * 109.47246 * 179.97438 * 16 13 12 18 18 C 1.38334 * 119.94577 * 270.02230 * 17 16 13 19 19 C 1.38293 * 120.24319 * 179.97438 * 18 17 16 20 20 C 1.38052 * 120.11340 * 0.02562 * 19 18 17 21 21 C 1.39285 * 119.88073 * 359.97438 * 20 19 18 22 22 C 1.48467 * 120.11394 * 180.02562 * 21 20 19 23 23 N 1.34047 * 126.66918 * 179.68907 * 22 21 20 24 24 N 1.28987 * 107.26543 * 179.83549 * 23 22 21 25 25 N 1.28729 * 108.94255 * 0.43596 * 24 23 22 26 26 H 0.97000 * 125.33735 * 179.74524 * 25 24 23 27 27 N 1.28868 * 109.31909 * 359.71969 * 25 24 23 28 28 C 1.38007 * 119.94027 * 90.00504 * 17 16 13 29 29 H 1.08998 * 109.47332 * 59.99921 * 1 2 3 30 30 H 1.08995 * 109.46662 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46887 * 299.99519 * 1 2 3 32 32 H 0.97001 * 119.99992 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99696 * 85.00383 * 12 2 1 34 34 H 1.09001 * 109.46660 * 60.00167 * 16 13 12 35 35 H 1.09002 * 109.47388 * 300.00223 * 16 13 12 36 36 H 1.08000 * 119.88112 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.94440 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.05965 * 180.27537 * 20 19 18 39 39 H 1.08001 * 120.05687 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0079 9 1 3.1454 -2.2876 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1772 2.5504 14 8 3.2875 1.1907 2.0750 15 8 2.8607 -0.8029 3.4765 16 6 0.8409 0.8989 3.0985 17 6 1.0717 1.7214 4.3399 18 6 0.9709 1.1320 5.5874 19 6 1.1820 1.8809 6.7306 20 6 1.4943 3.2221 6.6323 21 6 1.5971 3.8205 5.3788 22 6 1.9332 5.2623 5.2670 23 7 2.0706 5.9668 4.1349 24 7 2.3600 7.1781 4.4705 25 7 2.4170 7.2538 5.7543 26 1 2.6210 8.0556 6.2606 27 7 2.1600 6.0972 6.2613 28 6 1.3837 3.0613 4.2303 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7094 1.1619 -3.4844 33 1 2.1111 -1.6562 1.1948 34 1 0.1317 0.1009 3.3185 35 1 0.4387 1.5353 2.3102 36 1 0.7272 0.0830 5.6687 37 1 1.1025 1.4158 7.7021 38 1 1.6634 3.8051 7.5256 39 1 1.4629 3.5203 3.2559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735963891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:31 Heat of formation + Delta-G solvation = 74.617967 kcal Electronic energy + Delta-G solvation = -26243.137500 eV Core-core repulsion = 22315.987398 eV Total energy + Delta-G solvation = -3927.150102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.63456 -39.56817 -36.57768 -35.52836 -35.33641 -34.69255 -34.08969 -32.70913 -32.18506 -30.83102 -28.34274 -27.50797 -25.25260 -24.88547 -24.67492 -22.28377 -21.32634 -20.89112 -19.41905 -18.76934 -17.52763 -17.31998 -16.96791 -16.40885 -15.95398 -15.74339 -15.44048 -15.17097 -14.64289 -14.35684 -13.82968 -13.64733 -13.47042 -13.18100 -12.82211 -12.59200 -12.41048 -12.19117 -11.79820 -11.74999 -11.57660 -11.57049 -11.45267 -11.41966 -11.31657 -11.21699 -11.07712 -10.98946 -10.69306 -10.55953 -10.36807 -10.08518 -9.22350 -9.00527 -8.83849 -8.58549 -8.27148 -6.12809 -4.19341 0.44650 0.66742 1.02725 1.26400 2.02889 2.17743 3.26690 3.34515 3.37117 3.42781 3.48170 3.58521 3.97466 4.20071 4.37172 4.47887 4.58079 4.81114 4.89112 4.96214 5.17824 5.20744 5.21127 5.33301 5.40003 5.49226 5.74935 5.84856 6.10518 6.20101 6.20931 6.29146 6.30884 6.64460 6.69545 6.73903 6.94756 7.54531 7.64350 7.86796 7.96460 7.99563 8.25881 8.83545 9.46692 10.93667 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003101 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.788922 B = 9027.220292 C =10273.144544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 N -1.101 6.101 13 S 2.606 3.394 14 O -0.949 6.949 15 O -0.975 6.975 16 C -0.597 4.597 17 C -0.083 4.083 18 C -0.086 4.086 19 C -0.120 4.120 20 C -0.077 4.077 21 C -0.020 4.020 22 C 0.223 3.777 23 N -0.260 5.260 24 N -0.047 5.047 25 N -0.230 5.230 26 H 0.475 0.525 27 N -0.296 5.296 28 C -0.062 4.062 29 H 0.096 0.904 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.409 0.591 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 7.716 19.620 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.158 3.842 3 H 0.071 0.929 4 C -0.559 4.559 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.208 1.208 12 N -0.861 5.861 13 S 2.696 3.304 14 O -0.939 6.939 15 O -0.966 6.966 16 C -0.722 4.722 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.138 4.138 20 C -0.098 4.098 21 C -0.023 4.023 22 C -0.057 4.057 23 N -0.132 5.132 24 N -0.042 5.042 25 N -0.076 5.076 26 H 0.329 0.671 27 N -0.148 5.148 28 C -0.083 4.083 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.767 8.704 19.495 21.423 hybrid contribution -0.479 -0.525 -0.469 0.852 sum -2.246 8.178 19.026 20.830 Atomic orbital electron populations 1.22418 0.98710 1.00255 1.01010 1.18673 0.90583 0.93399 0.81562 0.92933 1.21234 1.31758 1.13124 0.89734 0.91668 1.24917 0.94895 0.95034 0.99122 1.69856 1.36356 1.22593 1.23881 0.86385 0.78590 0.79624 0.82468 1.19688 1.20969 1.20831 1.55604 1.83855 1.19166 1.27466 1.05053 0.76597 0.74917 0.73813 1.93604 1.59874 1.61249 1.79136 1.93526 1.79582 1.58773 1.64676 1.29970 1.26042 1.11482 1.04737 1.18978 1.02619 0.93585 0.93272 1.21394 0.96961 1.00705 0.91510 1.21072 1.00417 0.93454 0.98874 1.21208 0.97152 0.95147 0.96262 1.17150 1.05043 0.85639 0.94472 1.23643 1.01065 0.96405 0.84597 1.76199 1.16129 0.96426 1.24485 1.78968 1.14380 1.15048 0.95819 1.47729 1.44318 1.10381 1.05131 0.67121 1.74874 1.20756 0.92610 1.26584 1.21262 0.95249 0.92714 0.99057 0.88537 0.94406 0.96885 0.92603 0.75765 0.83946 0.83270 0.84525 0.84613 0.84672 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 9.26 37.16 0.34 -3.16 16 2 C 0.26 6.14 2.79 -69.08 -0.19 5.95 16 3 H 0.05 1.35 7.48 -51.93 -0.39 0.96 16 4 C -0.52 -13.60 8.76 -34.44 -0.30 -13.90 16 5 H 0.07 1.69 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.69 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 N -1.10 -21.72 5.35 -5.88 -0.03 -21.75 16 13 S 2.61 47.69 5.42 -107.50 -0.58 47.10 16 14 O -0.95 -21.07 17.39 -57.54 -1.00 -22.07 16 15 O -0.98 -18.81 18.08 -57.54 -1.04 -19.85 16 16 C -0.60 -8.40 5.34 36.00 0.19 -8.21 16 17 C -0.08 -1.13 5.13 -104.67 -0.54 -1.66 16 18 C -0.09 -0.98 9.69 -39.53 -0.38 -1.37 16 19 C -0.12 -1.16 10.03 -39.63 -0.40 -1.56 16 20 C -0.08 -0.80 9.70 -39.26 -0.38 -1.19 16 21 C -0.02 -0.25 5.88 -104.89 -0.62 -0.87 16 22 C 0.22 2.91 7.94 -156.31 -1.24 1.67 16 23 N -0.26 -3.75 12.23 32.16 0.39 -3.36 16 24 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 25 N -0.23 -1.90 7.90 60.35 0.48 -1.42 16 26 H 0.47 1.41 8.96 -340.37 -3.05 -1.64 16 27 N -0.30 -3.14 12.08 32.17 0.39 -2.75 16 28 C -0.06 -0.88 9.35 -39.26 -0.37 -1.24 16 29 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.01 0.22 5.78 -51.93 -0.30 -0.08 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.41 7.42 8.79 -34.47 -0.30 7.12 16 34 H 0.14 1.59 8.08 -51.92 -0.42 1.17 16 35 H 0.15 2.07 6.72 -51.92 -0.35 1.72 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.14 1.13 7.88 -52.49 -0.41 0.71 16 39 H 0.15 2.16 7.89 -52.49 -0.41 1.75 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -34.69 351.32 -10.43 -45.11 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.77 Total: 5.23 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -3.98 Total: -23.97 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 2.67 Total: -52.51 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -2.04 Total: -41.92 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 47.69 SS G_CDS: -0.58 Total: 47.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.69 -10.43 -45.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.729 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds