Wall clock time and date at job start Tue Mar 31 2020 20:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46623 * 2 1 4 4 C 1.50697 * 109.46950 * 240.00522 * 2 1 3 5 5 H 1.07999 * 119.99528 * 239.99971 * 4 2 1 6 6 C 1.37876 * 120.00226 * 59.99463 * 4 2 1 7 7 N 1.31513 * 120.00212 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99805 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47436 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47313 * 120.00229 * 8 6 4 11 11 H 1.48507 * 109.47190 * 239.99987 * 8 6 4 12 12 N 1.46494 * 109.47130 * 119.99921 * 2 1 3 13 13 S 1.65596 * 120.00309 * 264.99709 * 12 2 1 14 14 O 1.42100 * 104.27958 * 308.93493 * 13 12 2 15 15 O 1.42099 * 104.27929 * 181.07257 * 13 12 2 16 16 C 1.81405 * 104.44842 * 65.00247 * 13 12 2 17 17 C 1.50692 * 109.47246 * 179.97438 * 16 13 12 18 18 C 1.38334 * 119.94577 * 270.02230 * 17 16 13 19 19 C 1.38293 * 120.24319 * 179.97438 * 18 17 16 20 20 C 1.38052 * 120.11340 * 0.02562 * 19 18 17 21 21 C 1.39285 * 119.88073 * 359.97438 * 20 19 18 22 22 C 1.48467 * 120.11394 * 180.02562 * 21 20 19 23 23 N 1.34047 * 126.66918 * 179.68907 * 22 21 20 24 24 N 1.28987 * 107.26543 * 179.83549 * 23 22 21 25 25 N 1.28729 * 108.94255 * 0.43596 * 24 23 22 26 26 H 0.97000 * 125.33735 * 179.74524 * 25 24 23 27 27 N 1.28868 * 109.31909 * 359.71969 * 25 24 23 28 28 C 1.38007 * 119.94027 * 90.00504 * 17 16 13 29 29 H 1.08998 * 109.47332 * 59.99921 * 1 2 3 30 30 H 1.08995 * 109.46662 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46887 * 299.99519 * 1 2 3 32 32 H 0.97001 * 119.99992 * 179.97438 * 7 6 4 33 33 H 0.97004 * 119.99696 * 85.00383 * 12 2 1 34 34 H 1.09001 * 109.46660 * 60.00167 * 16 13 12 35 35 H 1.09002 * 109.47388 * 300.00223 * 16 13 12 36 36 H 1.08000 * 119.88112 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.94440 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.05965 * 180.27537 * 20 19 18 39 39 H 1.08001 * 120.05687 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0079 9 1 3.1454 -2.2876 -3.6039 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 16 2.4123 0.1772 2.5504 14 8 3.2875 1.1907 2.0750 15 8 2.8607 -0.8029 3.4765 16 6 0.8409 0.8989 3.0985 17 6 1.0717 1.7214 4.3399 18 6 0.9709 1.1320 5.5874 19 6 1.1820 1.8809 6.7306 20 6 1.4943 3.2221 6.6323 21 6 1.5971 3.8205 5.3788 22 6 1.9332 5.2623 5.2670 23 7 2.0706 5.9668 4.1349 24 7 2.3600 7.1781 4.4705 25 7 2.4170 7.2538 5.7543 26 1 2.6210 8.0556 6.2606 27 7 2.1600 6.0972 6.2613 28 6 1.3837 3.0613 4.2303 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.7094 1.1619 -3.4844 33 1 2.1111 -1.6562 1.1948 34 1 0.1317 0.1009 3.3185 35 1 0.4387 1.5353 2.3102 36 1 0.7272 0.0830 5.6687 37 1 1.1025 1.4158 7.7021 38 1 1.6634 3.8051 7.5256 39 1 1.4629 3.5203 3.2559 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:30 Heat of formation + Delta-G solvation = 47.566336 kcal Electronic energy + Delta-G solvation = -26244.310546 eV Core-core repulsion = 22315.987398 eV Total energy + Delta-G solvation = -3928.323148 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.51668 -40.46495 -38.13820 -37.25933 -36.92852 -35.59848 -35.02047 -34.10705 -33.63998 -31.71289 -30.07065 -28.60068 -27.16634 -25.77570 -25.59445 -23.17631 -22.81524 -22.16997 -20.35501 -20.16501 -19.18276 -18.20069 -18.08377 -17.95379 -17.19836 -17.11449 -16.64224 -16.59380 -16.12574 -15.36367 -15.27871 -14.74655 -14.53883 -14.44157 -14.12695 -13.98834 -13.70548 -13.49625 -13.38048 -13.13378 -13.04993 -12.95234 -12.81462 -12.67200 -12.50887 -12.39504 -12.34269 -12.27848 -12.18946 -12.04221 -11.96848 -11.74364 -11.07148 -10.59146 -10.12240 -9.87231 -9.66988 -8.13339 -6.26417 -0.77489 -0.36113 0.12677 0.31054 1.23984 1.38541 1.43946 1.46801 1.57276 1.93588 2.45282 2.57230 2.66846 2.85775 3.09012 3.16604 3.28638 3.41787 3.81602 3.99344 4.06920 4.17075 4.31010 4.39323 4.47817 4.52621 4.56703 4.80114 4.93631 4.95881 5.04563 5.18745 5.28920 5.34844 5.38630 5.59001 5.61118 5.80724 5.81266 6.09324 6.16704 6.45411 6.84140 7.06522 7.42769 8.92022 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003101 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.788922 B = 9027.220292 C =10273.144544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.265 3.735 3 H 0.020 0.980 4 C -0.542 4.542 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.912 5.912 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.284 1.284 12 N -1.104 6.104 13 S 2.605 3.395 14 O -1.001 7.001 15 O -0.986 6.986 16 C -0.569 4.569 17 C -0.106 4.106 18 C -0.088 4.088 19 C -0.109 4.109 20 C -0.067 4.067 21 C -0.035 4.035 22 C 0.208 3.792 23 N -0.303 5.303 24 N -0.058 5.058 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.284 5.284 28 C -0.084 4.084 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.415 0.585 34 H 0.181 0.819 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.160 0.840 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 7.196 22.347 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.160 3.840 3 H 0.038 0.962 4 C -0.581 4.581 5 H 0.079 0.921 6 C -0.183 4.183 7 N -0.551 5.551 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.210 1.210 12 N -0.863 5.863 13 S 2.702 3.298 14 O -0.991 6.991 15 O -0.977 6.977 16 C -0.699 4.699 17 C -0.108 4.108 18 C -0.108 4.108 19 C -0.127 4.127 20 C -0.088 4.088 21 C -0.038 4.038 22 C -0.072 4.072 23 N -0.175 5.175 24 N -0.053 5.053 25 N -0.048 5.048 26 H 0.355 0.645 27 N -0.137 5.137 28 C -0.106 4.106 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.249 0.751 34 H 0.198 0.802 35 H 0.168 0.832 36 H 0.179 0.821 37 H 0.195 0.805 38 H 0.178 0.822 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.697 8.162 22.196 23.802 hybrid contribution -0.165 -0.229 -1.097 1.133 sum -2.862 7.934 21.099 22.722 Atomic orbital electron populations 1.22249 0.96895 1.00926 1.01497 1.18390 0.91909 0.91683 0.82047 0.96206 1.21622 1.31898 1.13285 0.91303 0.92060 1.25656 0.95165 0.95749 1.01775 1.69972 1.37104 1.23564 1.24443 0.85480 0.78215 0.78535 0.79218 1.19320 1.20044 1.21047 1.55394 1.84144 1.19430 1.27333 1.04878 0.77788 0.74029 0.73135 1.93539 1.63334 1.62259 1.79961 1.93499 1.80821 1.59169 1.64200 1.29631 1.22444 1.12440 1.05366 1.19011 1.04629 0.93287 0.93839 1.21780 0.95998 1.02051 0.90949 1.21552 0.98185 0.92867 1.00083 1.21564 0.95476 0.95822 0.95922 1.17338 1.05689 0.85693 0.95126 1.23801 1.01785 0.96947 0.84681 1.76181 1.17859 0.97466 1.25961 1.78896 1.14976 1.14370 0.97022 1.47802 1.41797 1.10706 1.04482 0.64463 1.74825 1.20332 0.92796 1.25775 1.21230 0.96862 0.93578 0.98927 0.91238 0.93508 0.93238 0.92537 0.75100 0.80169 0.83226 0.82132 0.80526 0.82226 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 12.72 2.79 44.25 0.12 12.84 16 3 H 0.02 1.09 7.48 -2.38 -0.02 1.07 16 4 C -0.54 -28.99 8.76 25.60 0.22 -28.76 16 5 H 0.06 3.23 7.81 -2.91 -0.02 3.20 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.91 -50.59 11.32 21.45 0.24 -50.35 16 8 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 N -1.10 -44.04 5.35 -172.52 -0.92 -44.97 16 13 S 2.60 96.15 5.42 -56.49 -0.31 95.84 16 14 O -1.00 -46.70 17.39 -127.65 -2.22 -48.92 16 15 O -0.99 -37.47 18.08 -127.65 -2.31 -39.78 16 16 C -0.57 -15.29 5.34 71.23 0.38 -14.91 16 17 C -0.11 -2.74 5.13 -19.90 -0.10 -2.84 16 18 C -0.09 -1.72 9.69 22.31 0.22 -1.51 16 19 C -0.11 -1.67 10.03 22.24 0.22 -1.45 16 20 C -0.07 -1.21 9.70 22.48 0.22 -0.99 16 21 C -0.04 -0.88 5.88 -20.04 -0.12 -1.00 16 22 C 0.21 5.36 7.94 137.38 1.09 6.45 16 23 N -0.30 -8.98 12.23 -52.18 -0.64 -9.62 16 24 N -0.06 -1.35 13.47 37.02 0.50 -0.85 16 25 N -0.20 -2.97 7.90 37.02 0.29 -2.68 16 26 H 0.50 1.92 8.96 -347.54 -3.12 -1.19 16 27 N -0.28 -5.56 12.08 -52.13 -0.63 -6.19 16 28 C -0.08 -2.43 9.35 22.48 0.21 -2.22 16 29 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.68 5.78 -2.38 -0.01 1.66 16 32 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.41 15.13 8.79 -96.74 -0.85 14.28 16 34 H 0.18 3.42 8.08 -2.39 -0.02 3.41 16 35 H 0.15 4.08 6.72 -2.39 -0.02 4.07 16 36 H 0.16 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.16 2.03 7.88 -2.91 -0.02 2.01 16 39 H 0.13 4.01 7.89 -2.91 -0.02 3.99 16 Total: -1.00 -78.10 351.32 -3.22 -81.32 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -2.83 Total: 20.30 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 3.58 Total: -38.99 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -1.16 Total: -114.66 kcal Atomic # 8 Polarization: -84.17 SS G_CDS: -4.53 Total: -88.70 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 96.15 SS G_CDS: -0.31 Total: 95.84 kcal Total: -78.10 -3.22 -81.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.885 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds