Wall clock time and date at job start Tue Mar 31 2020 20:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.50703 * 109.47445 * 119.99836 * 2 1 3 5 5 H 1.07995 * 120.00076 * 119.99770 * 4 2 1 6 6 C 1.37886 * 120.00105 * 300.00607 * 4 2 1 7 7 N 1.31516 * 119.99555 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47132 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46915 * 119.99730 * 8 6 4 11 11 H 1.48500 * 109.46948 * 239.99948 * 8 6 4 12 12 N 1.46494 * 109.47520 * 240.00299 * 2 1 3 13 13 S 1.65596 * 120.00309 * 94.99375 * 12 2 1 14 14 O 1.42100 * 104.27958 * 308.93493 * 13 12 2 15 15 O 1.42099 * 104.27929 * 181.07257 * 13 12 2 16 16 C 1.81405 * 104.44842 * 65.00247 * 13 12 2 17 17 C 1.50692 * 109.47246 * 179.97438 * 16 13 12 18 18 C 1.38334 * 119.94577 * 270.02230 * 17 16 13 19 19 C 1.38293 * 120.24319 * 179.97438 * 18 17 16 20 20 C 1.38052 * 120.11340 * 0.02562 * 19 18 17 21 21 C 1.39285 * 119.88073 * 359.97438 * 20 19 18 22 22 C 1.48467 * 120.11394 * 180.02562 * 21 20 19 23 23 N 1.34047 * 126.66918 * 179.68907 * 22 21 20 24 24 N 1.28987 * 107.26543 * 179.83549 * 23 22 21 25 25 N 1.28729 * 108.94255 * 0.43596 * 24 23 22 26 26 H 0.97000 * 125.33735 * 179.74524 * 25 24 23 27 27 N 1.28868 * 109.31909 * 359.71969 * 25 24 23 28 28 C 1.38007 * 119.94027 * 90.00504 * 17 16 13 29 29 H 1.09004 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47295 * 299.99820 * 1 2 3 31 31 H 1.08996 * 109.47421 * 60.00356 * 1 2 3 32 32 H 0.97000 * 119.99236 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99696 * 275.00049 * 12 2 1 34 34 H 1.09001 * 109.46660 * 60.00167 * 16 13 12 35 35 H 1.09002 * 109.47388 * 300.00223 * 16 13 12 36 36 H 1.08000 * 119.88112 * 0.02562 * 18 17 16 37 37 H 1.08000 * 119.94440 * 180.02562 * 19 18 17 38 38 H 1.08001 * 120.05965 * 180.27537 * 20 19 18 39 39 H 1.08001 * 120.05687 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.1467 -2.2869 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1661 -1.5867 4.8161 12 7 2.0184 -0.6905 -1.1961 13 16 2.4121 0.1773 -2.5504 14 8 1.2751 0.9967 -2.7846 15 8 2.8123 -0.8074 -3.4936 16 6 3.8312 1.1874 -2.0440 17 6 4.2871 2.0317 -3.2060 18 6 5.2404 1.5441 -4.0818 19 6 5.6629 2.3134 -5.1505 20 6 5.1348 3.5735 -5.3484 21 6 4.1746 4.0693 -4.4697 22 6 3.6029 5.4236 -4.6779 23 7 2.6737 6.0251 -3.9219 24 7 2.4552 7.1875 -4.4366 25 7 3.1974 7.3293 -5.4788 26 1 3.2200 8.1137 -6.0490 27 7 3.9060 6.2659 -5.6454 28 6 3.7525 3.2899 -3.3949 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 0.7094 1.1617 3.4845 33 1 2.1110 -1.6561 -1.1948 34 1 4.6458 0.5364 -1.7268 35 1 3.5399 1.8344 -1.2166 36 1 5.6558 0.5586 -3.9308 37 1 6.4071 1.9277 -5.8315 38 1 5.4621 4.1717 -6.1859 39 1 3.0077 3.6694 -2.7110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963892.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:34 Heat of formation + Delta-G solvation = 47.528916 kcal Electronic energy + Delta-G solvation = -26244.752667 eV Core-core repulsion = 22316.427896 eV Total energy + Delta-G solvation = -3928.324771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.51623 -40.46597 -38.13925 -37.23983 -36.90515 -35.59645 -35.01530 -34.08591 -33.62872 -31.71510 -30.09701 -28.51999 -27.20684 -25.77560 -25.59569 -23.17779 -22.81684 -22.22507 -20.34594 -20.15175 -19.16147 -18.19622 -18.05020 -17.90092 -17.19096 -17.13541 -16.65637 -16.57883 -16.12634 -15.39508 -15.20792 -14.72423 -14.54335 -14.41165 -14.11693 -14.01886 -13.68881 -13.45750 -13.37208 -13.19680 -13.07298 -12.93360 -12.81833 -12.69283 -12.49525 -12.36378 -12.30630 -12.28713 -12.20734 -12.06459 -11.95093 -11.77271 -11.07029 -10.57040 -10.15052 -9.87227 -9.66505 -8.11068 -6.26243 -0.75635 -0.36374 0.12702 0.30568 1.23791 1.38562 1.47251 1.50407 1.60558 1.93355 2.46689 2.57158 2.66428 2.84880 3.09007 3.18625 3.28806 3.43017 3.81792 3.99184 4.06991 4.17109 4.30916 4.39384 4.48907 4.52991 4.55362 4.81633 4.92101 4.95808 5.14187 5.18638 5.28480 5.34279 5.38772 5.59148 5.62032 5.75377 5.80405 6.04546 6.11428 6.45501 6.86526 7.06570 7.44337 8.94278 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.003137 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.923189 B = 8922.768006 C = 9776.181852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.029 0.971 4 C -0.538 4.538 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.285 1.285 12 N -1.104 6.104 13 S 2.610 3.390 14 O -0.993 6.993 15 O -0.986 6.986 16 C -0.571 4.571 17 C -0.105 4.105 18 C -0.090 4.090 19 C -0.109 4.109 20 C -0.068 4.068 21 C -0.034 4.034 22 C 0.208 3.792 23 N -0.303 5.303 24 N -0.057 5.057 25 N -0.196 5.196 26 H 0.496 0.504 27 N -0.284 5.284 28 C -0.084 4.084 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.415 0.585 34 H 0.174 0.826 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.161 0.839 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.285 8.661 -16.823 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.578 4.578 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.211 1.211 12 N -0.863 5.863 13 S 2.706 3.294 14 O -0.983 6.983 15 O -0.977 6.977 16 C -0.700 4.700 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.126 4.126 20 C -0.088 4.088 21 C -0.038 4.038 22 C -0.072 4.072 23 N -0.174 5.174 24 N -0.052 5.052 25 N -0.048 5.048 26 H 0.355 0.645 27 N -0.137 5.137 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.249 0.751 34 H 0.192 0.808 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.284 9.445 -17.359 22.757 hybrid contribution 0.338 -0.165 1.353 1.404 sum 11.621 9.280 -16.007 21.849 Atomic orbital electron populations 1.22159 0.99053 0.99731 1.00436 1.18289 0.91024 0.91668 0.82052 0.95366 1.21667 1.31949 1.13504 0.90631 0.90891 1.25715 0.95040 0.95644 1.01974 1.70020 1.37031 1.23865 1.24465 0.85440 0.77982 0.78704 0.79073 1.18674 1.20745 1.21131 1.55449 1.81483 1.19000 1.30394 1.04781 0.76632 0.74717 0.73278 1.93540 1.48258 1.71758 1.84785 1.93501 1.84916 1.58283 1.60950 1.29503 1.20613 1.13818 1.06112 1.19022 1.00569 0.94605 0.96546 1.21771 0.94285 1.01379 0.93518 1.21548 1.00442 0.93018 0.97616 1.21564 0.93154 0.96366 0.97711 1.17332 1.00072 0.87997 0.98364 1.23780 0.95692 0.97288 0.90426 1.76180 1.15771 1.00493 1.24996 1.78894 1.14459 1.12894 0.98988 1.47802 1.22754 1.14877 1.19348 0.64456 1.74827 1.19061 0.96224 1.23589 1.21218 0.98727 0.93490 0.97142 0.94654 0.91111 0.95540 0.92595 0.75060 0.80796 0.83675 0.82331 0.80507 0.82141 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.69 9.29 71.98 0.67 -7.02 16 2 C 0.28 13.13 2.66 44.25 0.12 13.24 16 3 H 0.03 1.41 7.15 -2.38 -0.02 1.39 16 4 C -0.54 -26.99 8.76 25.60 0.22 -26.76 16 5 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -50.01 11.32 21.45 0.24 -49.77 16 8 Si 0.96 40.80 29.54 68.60 2.03 42.83 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 N -1.10 -43.72 5.35 -172.53 -0.92 -44.64 16 13 S 2.61 95.58 5.36 -56.49 -0.30 95.27 16 14 O -0.99 -44.17 17.11 -127.65 -2.18 -46.35 16 15 O -0.99 -37.24 18.08 -127.65 -2.31 -39.55 16 16 C -0.57 -16.43 6.08 71.23 0.43 -16.00 16 17 C -0.11 -2.86 5.13 -19.90 -0.10 -2.96 16 18 C -0.09 -1.86 9.69 22.31 0.22 -1.65 16 19 C -0.11 -1.74 10.03 22.24 0.22 -1.52 16 20 C -0.07 -1.24 9.70 22.48 0.22 -1.02 16 21 C -0.03 -0.87 5.88 -20.04 -0.12 -0.99 16 22 C 0.21 5.40 7.94 137.38 1.09 6.49 16 23 N -0.30 -8.98 12.23 -52.18 -0.64 -9.62 16 24 N -0.06 -1.34 13.47 37.02 0.50 -0.84 16 25 N -0.20 -2.97 7.90 37.02 0.29 -2.67 16 26 H 0.50 1.91 8.96 -347.54 -3.12 -1.21 16 27 N -0.28 -5.58 12.08 -52.13 -0.63 -6.21 16 28 C -0.08 -2.48 9.35 22.48 0.21 -2.27 16 29 H 0.03 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 31 H 0.03 1.27 7.42 -2.39 -0.02 1.25 16 32 H 0.26 13.78 8.31 -92.71 -0.77 13.00 16 33 H 0.41 14.99 8.79 -96.74 -0.85 14.14 16 34 H 0.17 3.87 8.08 -2.39 -0.02 3.85 16 35 H 0.15 4.35 7.38 -2.39 -0.02 4.33 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.16 2.09 7.88 -2.91 -0.02 2.07 16 39 H 0.13 4.09 7.89 -2.91 -0.02 4.07 16 Total: -1.00 -74.32 353.61 -3.13 -77.46 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -2.84 Total: 23.26 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 3.63 Total: -39.16 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -1.16 Total: -113.75 kcal Atomic # 8 Polarization: -81.41 SS G_CDS: -4.49 Total: -85.90 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 95.58 SS G_CDS: -0.30 Total: 95.27 kcal Total: -74.32 -3.13 -77.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963892.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.985 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds