Wall clock time and date at job start Tue Mar 31 2020 20:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47105 * 2 1 4 4 C 1.50693 * 109.47201 * 120.00354 * 2 1 3 5 5 H 1.08007 * 119.99970 * 120.00046 * 4 2 1 6 6 C 1.37876 * 120.00002 * 299.99639 * 4 2 1 7 7 N 1.31510 * 120.00429 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47277 * 59.99928 * 8 6 4 10 10 H 1.48501 * 109.47201 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47117 * 300.00118 * 8 6 4 12 12 N 1.46499 * 109.46863 * 240.00607 * 2 1 3 13 13 C 1.46502 * 119.99936 * 299.99755 * 12 2 1 14 14 S 1.65599 * 120.00337 * 119.99743 * 12 2 1 15 15 O 1.42100 * 106.40241 * 336.45887 * 14 12 2 16 16 O 1.42096 * 106.40379 * 203.53509 * 14 12 2 17 17 C 1.76199 * 107.21658 * 89.99803 * 14 12 2 18 18 C 1.38319 * 119.88412 * 269.72686 * 17 14 12 19 19 C 1.38027 * 120.12060 * 179.76605 * 18 17 14 20 20 C 1.39300 * 119.87917 * 0.52852 * 19 18 17 21 21 C 1.48466 * 120.11878 * 179.74247 * 20 19 18 22 22 N 1.34042 * 126.67361 * 180.02562 * 21 20 19 23 23 N 1.28984 * 107.26644 * 179.97438 * 22 21 20 24 24 N 1.28726 * 108.94819 * 0.02562 * 23 22 21 25 25 H 0.97004 * 125.34804 * 179.97438 * 24 23 22 26 26 N 1.28877 * 109.31511 * 359.74899 * 24 23 22 27 27 C 1.39304 * 119.76593 * 359.72556 * 20 19 18 28 28 C 1.38028 * 119.87907 * 0.02562 * 27 20 19 29 29 H 1.08998 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47129 * 299.99752 * 1 2 3 31 31 H 1.09000 * 109.47909 * 59.99595 * 1 2 3 32 32 H 0.96998 * 120.00887 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.46955 * 270.00024 * 13 12 2 34 34 H 1.09003 * 109.47115 * 30.00071 * 13 12 2 35 35 H 1.08994 * 109.47486 * 150.00176 * 13 12 2 36 36 H 1.08007 * 119.93590 * 0.02562 * 18 17 14 37 37 H 1.07997 * 120.06140 * 180.24937 * 19 18 17 38 38 H 1.07995 * 120.05891 * 180.02562 * 27 20 19 39 39 H 1.08001 * 119.93758 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9429 0.8295 2.6035 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1192 4.0075 10 1 1.8271 -0.4202 5.2204 11 1 1.8281 -2.5201 4.0080 12 7 2.0182 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 16 2.9702 0.1143 -2.2863 15 8 2.6902 1.4974 -2.1193 16 8 2.8226 -0.5644 -3.5260 17 6 4.6443 -0.1181 -1.7882 18 6 5.2373 0.7835 -0.9229 19 6 6.5469 0.6035 -0.5257 20 6 7.2749 -0.4824 -1.0066 21 6 8.6857 -0.6780 -0.5874 22 7 9.5035 -1.6699 -0.9669 23 7 10.6369 -1.4764 -0.3823 24 7 10.5587 -0.4138 0.3400 25 1 11.2760 -0.0495 0.8818 26 7 9.3791 0.0928 0.2266 27 6 6.6745 -1.3845 -1.8820 28 6 5.3627 -1.1979 -2.2687 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3635 0.5139 -0.8899 32 1 0.7089 1.1612 3.4845 33 1 2.4157 -2.7376 -0.9719 34 1 0.6903 -2.3001 -0.9848 35 1 1.6236 -2.2851 -2.5003 36 1 4.6733 1.6275 -0.5541 37 1 7.0077 1.3057 0.1531 38 1 7.2344 -2.2282 -2.2574 39 1 4.8961 -1.8969 -2.9471 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735963919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:58 Heat of formation + Delta-G solvation = 62.631794 kcal Electronic energy + Delta-G solvation = -26921.336282 eV Core-core repulsion = 22993.666420 eV Total energy + Delta-G solvation = -3927.669861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.58679 -40.28892 -38.32840 -37.86808 -36.88196 -35.57345 -34.80695 -34.48513 -32.20282 -31.85795 -30.86804 -27.27116 -26.93739 -26.12176 -25.77910 -23.65066 -23.01437 -22.49524 -20.31919 -20.03322 -18.90164 -18.43041 -18.27697 -18.24877 -17.51502 -17.11020 -16.55093 -15.94981 -15.68090 -15.24126 -15.07374 -14.83524 -14.58347 -14.57127 -14.29619 -14.05211 -13.62233 -13.40217 -13.36279 -13.16789 -13.12202 -12.89913 -12.73163 -12.57687 -12.53748 -12.51141 -12.27028 -12.18878 -12.14202 -12.13533 -11.94279 -11.78583 -11.09595 -10.46213 -10.16598 -10.12848 -9.60540 -8.06322 -6.20069 -0.82992 -0.45183 0.03764 0.23542 1.00708 1.31065 1.45619 1.46998 1.53433 2.06779 2.44311 2.46978 2.53410 2.83568 2.99844 3.22203 3.31765 3.82589 3.84177 3.98895 4.19151 4.22609 4.28069 4.39696 4.52561 4.80411 4.87926 4.88676 4.98622 5.01371 5.03711 5.09008 5.17625 5.21851 5.23262 5.52457 5.65346 5.66376 5.77058 5.89776 6.13402 6.33311 6.88657 6.99134 7.49303 8.97772 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010774 B = 0.004362 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.311374 B = 6417.242636 C = 8163.143728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.271 3.729 3 H 0.033 0.967 4 C -0.529 4.529 5 H 0.065 0.935 6 C 0.023 3.977 7 N -0.914 5.914 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.986 5.986 13 C 0.088 3.912 14 S 2.695 3.305 15 O -0.990 6.990 16 O -0.977 6.977 17 C -0.660 4.660 18 C -0.026 4.026 19 C -0.102 4.102 20 C 0.026 3.974 21 C 0.201 3.799 22 N -0.281 5.281 23 N -0.051 5.051 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.287 5.287 27 C -0.097 4.097 28 C -0.024 4.024 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.621 -4.035 -5.036 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.167 3.833 3 H 0.050 0.950 4 C -0.568 4.568 5 H 0.083 0.917 6 C -0.177 4.177 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.196 1.196 12 N -0.825 5.825 13 C -0.057 4.057 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.968 6.968 17 C -0.748 4.748 18 C -0.045 4.045 19 C -0.123 4.123 20 C 0.022 3.978 21 C -0.078 4.078 22 N -0.153 5.153 23 N -0.045 5.045 24 N -0.048 5.048 25 H 0.356 0.644 26 N -0.140 5.140 27 C -0.118 4.118 28 C -0.043 4.043 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.860 -3.776 -5.608 17.241 hybrid contribution 0.657 0.158 1.926 2.041 sum 16.518 -3.619 -3.682 17.306 Atomic orbital electron populations 1.21966 0.97579 1.00276 1.00248 1.18473 0.92128 0.91659 0.81049 0.94963 1.21589 1.31463 1.13023 0.90752 0.91684 1.25551 0.95234 0.95553 1.01382 1.69981 1.37279 1.23800 1.24293 0.85763 0.78543 0.78959 0.79242 1.20191 1.21314 1.19576 1.57268 1.63736 1.22825 1.38699 1.21561 1.02456 0.79927 1.01706 1.01535 0.73835 0.72832 0.72989 1.93517 1.84554 1.33351 1.86676 1.93490 1.86505 1.75536 1.41254 1.31133 1.25568 1.05784 1.12356 1.20950 0.94978 0.96815 0.91803 1.21362 0.93708 0.97501 0.99741 1.17613 0.86366 0.96363 0.97434 1.23610 0.96936 0.90717 0.96576 1.76071 0.96816 1.21888 1.20543 1.78855 1.17264 1.04070 1.04350 1.47808 1.10513 1.15522 1.30909 0.64408 1.74942 0.94459 1.24404 1.20172 1.21457 0.94815 0.99246 0.96234 1.21106 0.93788 0.94005 0.95424 0.93506 0.91050 0.95786 0.92727 0.92328 0.90362 0.89669 0.84262 0.82795 0.81733 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.51 8.95 71.98 0.64 -5.86 16 2 C 0.27 12.83 2.62 44.24 0.12 12.95 16 3 H 0.03 1.72 6.91 -2.38 -0.02 1.70 16 4 C -0.53 -26.35 8.37 25.60 0.21 -26.14 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.91 -49.56 11.32 21.45 0.24 -49.32 16 8 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 9 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 N -0.99 -38.79 3.06 -520.45 -1.59 -40.39 16 13 C 0.09 2.85 9.90 127.77 1.26 4.12 16 14 S 2.70 101.31 5.69 -56.49 -0.32 100.99 16 15 O -0.99 -43.66 15.83 -128.00 -2.03 -45.69 16 16 O -0.98 -36.25 15.87 -128.00 -2.03 -38.28 16 17 C -0.66 -21.69 5.98 22.31 0.13 -21.56 16 18 C -0.03 -0.85 9.51 22.24 0.21 -0.64 16 19 C -0.10 -2.88 9.70 22.48 0.22 -2.66 16 20 C 0.03 0.68 5.88 -20.04 -0.12 0.56 16 21 C 0.20 4.93 7.94 137.38 1.09 6.02 16 22 N -0.28 -6.73 12.23 -52.18 -0.64 -7.37 16 23 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 24 N -0.20 -2.77 7.90 37.02 0.29 -2.48 16 25 H 0.50 1.79 8.96 -347.53 -3.12 -1.33 16 26 N -0.29 -5.94 12.08 -52.13 -0.63 -6.57 16 27 C -0.10 -2.40 9.70 22.48 0.22 -2.18 16 28 C -0.02 -0.66 9.51 22.24 0.21 -0.44 16 29 H 0.05 1.98 6.66 -2.39 -0.02 1.97 16 30 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 31 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.52 6.43 -2.39 -0.02 2.50 16 35 H 0.08 2.38 7.02 -2.39 -0.02 2.36 16 36 H 0.14 4.75 7.60 -2.91 -0.02 4.73 16 37 H 0.15 3.75 7.88 -2.91 -0.02 3.72 16 38 H 0.17 3.27 7.89 -2.91 -0.02 3.24 16 39 H 0.17 3.73 7.61 -2.91 -0.02 3.71 16 Total: -1.00 -67.66 346.93 -1.52 -69.18 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -2.00 Total: 11.51 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: 4.65 Total: -34.21 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -1.83 Total: -106.61 kcal Atomic # 8 Polarization: -79.91 SS G_CDS: -4.06 Total: -83.96 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 101.31 SS G_CDS: -0.32 Total: 100.99 kcal Total: -67.66 -1.52 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735963919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.816 kcal (2) G-P(sol) polarization free energy of solvation -67.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds