Wall clock time and date at job start Tue Mar 31 2020 20:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47596 * 2 1 4 4 C 1.36935 * 120.00148 * 272.78571 * 3 2 1 5 5 H 1.08000 * 120.00068 * 179.85793 * 4 3 2 6 6 C 1.38816 * 120.00177 * 359.85801 * 4 3 2 7 7 N 1.31617 * 119.99573 * 26.59886 * 6 4 3 8 8 Si 1.86798 * 120.00104 * 206.59552 * 6 4 3 9 9 H 1.48494 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46887 * 120.00059 * 8 6 4 11 11 H 1.48498 * 109.47015 * 239.99961 * 8 6 4 12 12 S 1.65602 * 119.99905 * 92.77985 * 3 2 1 13 13 O 1.42093 * 106.40123 * 23.54469 * 12 3 2 14 14 O 1.42104 * 106.40282 * 156.46341 * 12 3 2 15 15 C 1.76202 * 107.22111 * 270.00346 * 12 3 2 16 16 C 1.38037 * 119.94223 * 114.99913 * 15 12 3 17 17 C 1.39284 * 119.88280 * 179.97438 * 16 15 12 18 18 C 1.48462 * 120.11718 * 179.97438 * 17 16 15 19 19 N 1.34051 * 126.67602 * 359.68667 * 18 17 16 20 20 N 1.28989 * 107.26770 * 179.83744 * 19 18 17 21 21 N 1.28730 * 108.94343 * 0.43348 * 20 19 18 22 22 H 0.96999 * 125.34142 * 179.74921 * 21 20 19 23 23 N 1.28878 * 109.31782 * 359.72383 * 21 20 19 24 24 C 1.39320 * 119.76340 * 359.97438 * 17 16 15 25 25 C 1.38008 * 119.88161 * 0.02562 * 24 17 16 26 26 C 1.38301 * 119.93669 * 294.72755 * 15 12 3 27 27 C 1.50692 * 119.88580 * 359.97438 * 26 15 12 28 28 H 1.09003 * 109.46888 * 59.99746 * 1 2 3 29 29 H 1.08998 * 109.47754 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47391 * 300.00066 * 1 2 3 31 31 H 1.09002 * 109.46876 * 240.00015 * 2 1 3 32 32 H 1.09003 * 109.46888 * 120.00254 * 2 1 3 33 33 H 0.96996 * 119.99955 * 180.02562 * 7 6 4 34 34 H 1.08003 * 120.06396 * 359.95848 * 16 15 12 35 35 H 1.07999 * 120.05705 * 179.97438 * 24 17 16 36 36 H 1.08003 * 119.94079 * 180.02562 * 25 24 17 37 37 H 1.09003 * 109.47322 * 90.00038 * 27 26 15 38 38 H 1.09003 * 109.47565 * 210.00342 * 27 26 15 39 39 H 1.09008 * 109.46998 * 330.00054 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1923 2.0459 -1.1845 5 1 2.5502 3.0648 -1.1843 6 6 1.9087 1.4100 -2.3854 7 7 1.0234 0.4367 -2.4216 8 14 2.7832 1.9359 -3.9500 9 1 3.7242 3.0429 -3.6430 10 1 3.5386 0.7845 -4.5057 11 1 1.7824 2.3979 -4.9451 12 16 2.3600 2.1385 1.4325 13 8 2.6233 1.1103 2.3772 14 8 3.2877 3.1713 1.1291 15 6 0.8827 2.9375 1.9654 16 6 0.2575 2.5270 3.1256 17 6 -0.9099 3.1599 3.5459 18 6 -1.5870 2.7222 4.7926 19 7 -1.1981 1.7338 5.6104 20 7 -2.0517 1.6774 6.5758 21 7 -2.9537 2.5767 6.3892 22 1 -3.7120 2.7401 6.9715 23 7 -2.6908 3.2262 5.3075 24 6 -1.4399 4.2050 2.7924 25 6 -0.8068 4.6074 1.6341 26 6 0.3549 3.9785 1.2235 27 6 1.0456 4.4268 -0.0386 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8254 -0.0078 -3.2606 34 1 0.6725 1.7164 3.7062 35 1 -2.3451 4.6987 3.1137 36 1 -1.2166 5.4178 1.0494 37 1 0.6540 3.8646 -0.8864 38 1 0.8651 5.4905 -0.1935 39 1 2.1174 4.2494 0.0511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736511312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:14 Heat of formation + Delta-G solvation = 100.946547 kcal Electronic energy + Delta-G solvation = -27777.768583 eV Core-core repulsion = 23851.760174 eV Total energy + Delta-G solvation = -3926.008409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.42286 -38.97929 -36.34444 -36.05829 -34.51192 -34.45382 -33.76759 -31.70885 -31.58480 -30.80707 -29.39414 -27.04131 -24.72328 -24.63084 -23.30858 -22.56598 -21.59787 -21.01654 -19.25442 -18.53399 -17.40335 -17.11919 -16.86194 -16.43482 -15.29291 -15.17288 -14.53650 -14.43904 -14.29362 -13.94736 -13.46492 -13.33597 -13.23144 -12.80194 -12.53575 -12.32063 -12.10357 -11.97460 -11.77586 -11.62005 -11.39276 -11.31040 -11.12046 -11.02040 -10.92584 -10.86376 -10.74533 -10.65532 -10.46527 -10.40876 -9.89299 -9.73484 -9.65005 -9.14805 -8.80311 -8.20923 -8.15823 -6.58266 -3.91394 0.83457 1.22855 1.45060 1.71980 2.22078 2.45837 3.06143 3.16431 3.23862 3.76008 3.85615 3.99505 4.25803 4.41616 4.64039 5.03060 5.10347 5.21795 5.26774 5.46152 5.50375 5.65879 5.84909 5.96078 6.11696 6.19142 6.24863 6.32863 6.40411 6.51296 6.56413 6.59439 6.70114 6.73928 6.78076 6.95390 7.08345 7.16212 7.22828 7.54543 7.73734 8.16769 8.26211 8.62707 9.04625 10.32664 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.003961 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.051515 B = 7067.588220 C = 7263.216532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 N -0.799 5.799 4 C -0.248 4.248 5 H 0.126 0.874 6 C 0.028 3.972 7 N -0.826 5.826 8 Si 0.924 3.076 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.280 1.280 12 S 2.544 3.456 13 O -0.993 6.993 14 O -0.981 6.981 15 C -0.670 4.670 16 C 0.015 3.985 17 C -0.066 4.066 18 C 0.235 3.765 19 N -0.266 5.266 20 N -0.053 5.053 21 N -0.234 5.234 22 H 0.473 0.527 23 N -0.304 5.304 24 C -0.045 4.045 25 C -0.155 4.155 26 C 0.050 3.950 27 C -0.178 4.178 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.019 0.981 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.272 0.728 34 H 0.145 0.855 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 4.695 5.838 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 N -0.624 5.624 4 C -0.394 4.394 5 H 0.144 0.856 6 C -0.182 4.182 7 N -0.467 5.467 8 Si 0.749 3.251 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.206 1.206 12 S 2.639 3.361 13 O -0.982 6.982 14 O -0.970 6.970 15 C -0.746 4.746 16 C -0.006 4.006 17 C -0.070 4.070 18 C -0.045 4.045 19 N -0.139 5.139 20 N -0.048 5.048 21 N -0.079 5.079 22 H 0.326 0.674 23 N -0.155 5.155 24 C -0.065 4.065 25 C -0.174 4.174 26 C 0.048 3.952 27 C -0.234 4.234 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.162 0.838 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.595 4.253 7.033 11.191 hybrid contribution -1.455 0.797 -0.490 1.730 sum -9.050 5.050 6.543 12.257 Atomic orbital electron populations 1.22309 0.97270 1.00051 1.01821 1.21581 0.94228 0.82344 1.01890 1.55204 1.72447 1.16742 1.18003 1.20330 1.34964 1.01818 0.82278 0.85647 1.25448 0.96091 0.97207 0.99482 1.70281 1.26472 1.22585 1.27367 0.85884 0.79649 0.79343 0.80214 1.18473 1.20156 1.20591 1.10960 0.78338 0.72804 0.73991 1.93355 1.85737 1.56628 1.62528 1.93305 1.62146 1.57711 1.83864 1.32486 1.28013 1.10436 1.03633 1.20926 0.90985 0.95581 0.93117 1.17281 0.97479 1.00772 0.91515 1.23764 0.90698 0.92411 0.97586 1.76167 1.19717 1.17548 1.00457 1.78900 0.96719 1.10177 1.19035 1.47687 1.22037 1.21200 1.16975 0.67373 1.74902 1.18212 1.22118 1.00301 1.21147 0.98167 0.93752 0.93434 1.21057 0.96718 1.02175 0.97403 1.19772 0.91873 0.89926 0.93667 1.22076 1.04691 1.01658 0.94954 0.88517 0.94563 0.96195 0.87501 0.92964 0.91680 0.83776 0.85374 0.85313 0.87678 0.91596 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.64 37.16 0.36 -2.89 16 2 C 0.13 2.75 5.62 -4.05 -0.02 2.73 16 3 N -0.80 -18.14 2.92 -59.91 -0.17 -18.31 16 4 C -0.25 -5.57 7.11 -15.06 -0.11 -5.68 16 5 H 0.13 2.73 5.07 -52.49 -0.27 2.46 16 6 C 0.03 0.61 5.00 -17.43 -0.09 0.53 16 7 N -0.83 -18.14 8.10 55.49 0.45 -17.69 16 8 Si 0.92 17.36 29.63 -169.99 -5.04 12.33 16 9 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 10 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 12 S 2.54 58.36 5.16 -107.50 -0.56 57.80 16 13 O -0.99 -24.55 15.53 -57.17 -0.89 -25.43 16 14 O -0.98 -23.85 14.46 -57.17 -0.83 -24.68 16 15 C -0.67 -13.79 5.90 -39.63 -0.23 -14.02 16 16 C 0.02 0.30 9.20 -39.27 -0.36 -0.06 16 17 C -0.07 -1.16 5.88 -104.89 -0.62 -1.78 16 18 C 0.23 3.84 7.94 -156.30 -1.24 2.60 16 19 N -0.27 -4.50 12.23 32.16 0.39 -4.11 16 20 N -0.05 -0.72 13.47 60.35 0.81 0.09 16 21 N -0.23 -2.43 7.90 60.35 0.48 -1.96 16 22 H 0.47 2.32 8.96 -340.37 -3.05 -0.74 16 23 N -0.30 -4.07 12.08 32.17 0.39 -3.68 16 24 C -0.04 -0.69 9.70 -39.26 -0.38 -1.07 16 25 C -0.15 -2.45 9.68 -39.63 -0.38 -2.83 16 26 C 0.05 0.92 5.88 -104.57 -0.61 0.31 16 27 C -0.18 -3.15 7.90 36.00 0.28 -2.86 16 28 H 0.10 2.15 6.09 -51.93 -0.32 1.83 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 2.41 5.92 -51.93 -0.31 2.10 16 32 H 0.05 1.13 6.96 -51.93 -0.36 0.77 16 33 H 0.27 5.65 8.31 -40.82 -0.34 5.31 16 34 H 0.14 2.93 7.16 -52.48 -0.38 2.55 16 35 H 0.13 1.64 7.88 -52.49 -0.41 1.23 16 36 H 0.13 1.63 8.06 -52.48 -0.42 1.20 16 37 H 0.11 1.89 6.69 -51.93 -0.35 1.54 16 38 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.12 2.30 3.45 -51.92 -0.18 2.12 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -28.90 331.17 -9.82 -38.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.44 Total: 6.96 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -3.41 Total: -25.03 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 2.35 Total: -45.66 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.72 Total: -50.11 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.04 Total: 12.33 kcal Atomic # 16 Polarization: 58.36 SS G_CDS: -0.56 Total: 57.80 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.90 -9.82 -38.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736511312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.667 kcal (2) G-P(sol) polarization free energy of solvation -28.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds