Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47596 * 2 1 4 4 C 1.36935 * 120.00148 * 272.78571 * 3 2 1 5 5 H 1.08000 * 120.00068 * 179.85793 * 4 3 2 6 6 C 1.38816 * 120.00177 * 359.85801 * 4 3 2 7 7 N 1.31617 * 119.99573 * 26.59886 * 6 4 3 8 8 Si 1.86798 * 120.00104 * 206.59552 * 6 4 3 9 9 H 1.48494 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46887 * 120.00059 * 8 6 4 11 11 H 1.48498 * 109.47015 * 239.99961 * 8 6 4 12 12 S 1.65602 * 119.99905 * 92.77985 * 3 2 1 13 13 O 1.42093 * 106.40123 * 23.54469 * 12 3 2 14 14 O 1.42104 * 106.40282 * 156.46341 * 12 3 2 15 15 C 1.76202 * 107.22111 * 270.00346 * 12 3 2 16 16 C 1.38037 * 119.94223 * 114.99913 * 15 12 3 17 17 C 1.39284 * 119.88280 * 179.97438 * 16 15 12 18 18 C 1.48462 * 120.11718 * 179.97438 * 17 16 15 19 19 N 1.34051 * 126.67602 * 359.68667 * 18 17 16 20 20 N 1.28989 * 107.26770 * 179.83744 * 19 18 17 21 21 N 1.28730 * 108.94343 * 0.43348 * 20 19 18 22 22 H 0.96999 * 125.34142 * 179.74921 * 21 20 19 23 23 N 1.28878 * 109.31782 * 359.72383 * 21 20 19 24 24 C 1.39320 * 119.76340 * 359.97438 * 17 16 15 25 25 C 1.38008 * 119.88161 * 0.02562 * 24 17 16 26 26 C 1.38301 * 119.93669 * 294.72755 * 15 12 3 27 27 C 1.50692 * 119.88580 * 359.97438 * 26 15 12 28 28 H 1.09003 * 109.46888 * 59.99746 * 1 2 3 29 29 H 1.08998 * 109.47754 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47391 * 300.00066 * 1 2 3 31 31 H 1.09002 * 109.46876 * 240.00015 * 2 1 3 32 32 H 1.09003 * 109.46888 * 120.00254 * 2 1 3 33 33 H 0.96996 * 119.99955 * 180.02562 * 7 6 4 34 34 H 1.08003 * 120.06396 * 359.95848 * 16 15 12 35 35 H 1.07999 * 120.05705 * 179.97438 * 24 17 16 36 36 H 1.08003 * 119.94079 * 180.02562 * 25 24 17 37 37 H 1.09003 * 109.47322 * 90.00038 * 27 26 15 38 38 H 1.09003 * 109.47565 * 210.00342 * 27 26 15 39 39 H 1.09008 * 109.46998 * 330.00054 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1923 2.0459 -1.1845 5 1 2.5502 3.0648 -1.1843 6 6 1.9087 1.4100 -2.3854 7 7 1.0234 0.4367 -2.4216 8 14 2.7832 1.9359 -3.9500 9 1 3.7242 3.0429 -3.6430 10 1 3.5386 0.7845 -4.5057 11 1 1.7824 2.3979 -4.9451 12 16 2.3600 2.1385 1.4325 13 8 2.6233 1.1103 2.3772 14 8 3.2877 3.1713 1.1291 15 6 0.8827 2.9375 1.9654 16 6 0.2575 2.5270 3.1256 17 6 -0.9099 3.1599 3.5459 18 6 -1.5870 2.7222 4.7926 19 7 -1.1981 1.7338 5.6104 20 7 -2.0517 1.6774 6.5758 21 7 -2.9537 2.5767 6.3892 22 1 -3.7120 2.7401 6.9715 23 7 -2.6908 3.2262 5.3075 24 6 -1.4399 4.2050 2.7924 25 6 -0.8068 4.6074 1.6341 26 6 0.3549 3.9785 1.2235 27 6 1.0456 4.4268 -0.0386 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.8254 -0.0078 -3.2606 34 1 0.6725 1.7164 3.7062 35 1 -2.3451 4.6987 3.1137 36 1 -1.2166 5.4178 1.0494 37 1 0.6540 3.8646 -0.8864 38 1 0.8651 5.4905 -0.1935 39 1 2.1174 4.2494 0.0511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736511312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = 81.442875 kcal Electronic energy + Delta-G solvation = -27778.614326 eV Core-core repulsion = 23851.760174 eV Total energy + Delta-G solvation = -3926.854151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -45.52789 -40.32193 -38.06285 -37.87419 -36.34540 -35.63551 -34.96340 -33.40685 -32.87597 -32.16511 -31.10516 -28.36790 -26.34500 -25.84276 -24.54440 -23.97684 -23.27026 -22.34970 -20.40020 -20.18139 -18.95211 -18.56937 -18.20766 -18.05823 -16.77748 -16.61159 -16.15728 -15.96872 -15.76523 -15.21924 -15.07296 -14.81721 -14.52886 -14.50069 -14.16558 -13.59204 -13.47877 -13.38207 -13.32080 -13.16761 -12.95662 -12.74956 -12.52286 -12.47515 -12.44423 -12.34190 -12.27582 -12.22342 -11.99527 -11.80561 -11.58115 -11.44530 -11.25299 -10.81695 -10.20102 -9.87512 -9.52684 -8.26671 -5.64084 -0.39601 -0.10939 0.08254 0.16065 1.19117 1.37339 1.56233 1.64119 1.75647 2.31280 2.54644 2.58132 2.76050 2.94500 3.09268 3.32562 3.78263 3.93303 3.97922 4.01440 4.24122 4.36162 4.42529 4.52080 4.63586 4.77667 4.82322 4.91744 4.95995 4.98910 5.04300 5.17509 5.25999 5.35091 5.39691 5.44337 5.57260 5.59162 5.77708 5.88899 5.98775 6.54624 6.90558 7.04874 7.32720 8.65199 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018787 B = 0.003961 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.051515 B = 7067.588220 C = 7263.216532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.125 3.875 3 N -0.805 5.805 4 C -0.261 4.261 5 H 0.128 0.872 6 C 0.001 3.999 7 N -0.838 5.838 8 Si 0.982 3.018 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.272 1.272 12 S 2.540 3.460 13 O -1.023 7.023 14 O -1.004 7.004 15 C -0.688 4.688 16 C -0.007 4.007 17 C -0.068 4.068 18 C 0.215 3.785 19 N -0.305 5.305 20 N -0.055 5.055 21 N -0.196 5.196 22 H 0.496 0.504 23 N -0.287 5.287 24 C -0.033 4.033 25 C -0.143 4.143 26 C 0.031 3.969 27 C -0.175 4.175 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.014 0.986 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.278 0.722 34 H 0.124 0.876 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 6.407 5.334 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 N -0.629 5.629 4 C -0.407 4.407 5 H 0.146 0.854 6 C -0.208 4.208 7 N -0.478 5.478 8 Si 0.805 3.195 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.197 1.197 12 S 2.640 3.360 13 O -1.014 7.014 14 O -0.993 6.993 15 C -0.768 4.768 16 C -0.028 4.028 17 C -0.072 4.072 18 C -0.064 4.064 19 N -0.177 5.177 20 N -0.049 5.049 21 N -0.047 5.047 22 H 0.356 0.644 23 N -0.140 5.140 24 C -0.053 4.053 25 C -0.161 4.161 26 C 0.029 3.971 27 C -0.231 4.231 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.120 0.880 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.181 0.819 36 H 0.187 0.813 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.005 5.933 6.561 13.354 hybrid contribution -0.874 0.290 -0.241 0.952 sum -10.879 6.223 6.320 14.036 Atomic orbital electron populations 1.22170 0.96382 1.00761 1.00932 1.21575 0.94966 0.82278 1.01214 1.55292 1.72903 1.16752 1.17977 1.20606 1.35290 1.02360 0.82476 0.85436 1.26110 0.96205 0.97172 1.01328 1.70320 1.26579 1.22641 1.28258 0.85017 0.78614 0.78732 0.77114 1.18567 1.20417 1.19702 1.11093 0.78724 0.72311 0.73855 1.93291 1.86629 1.57818 1.63611 1.93260 1.63774 1.58150 1.84164 1.32056 1.27690 1.12105 1.04973 1.20802 0.92575 0.96147 0.93297 1.17415 0.96663 1.00892 0.92197 1.23629 0.91788 0.93177 0.97828 1.76166 1.21263 1.18708 1.01517 1.78843 0.96957 1.10766 1.18377 1.47766 1.21655 1.19266 1.16044 0.64424 1.74839 1.16846 1.21657 1.00620 1.21542 0.98723 0.92487 0.92589 1.21473 0.95135 1.02155 0.97385 1.20001 0.93254 0.89894 0.93922 1.21993 1.02928 1.03747 0.94425 0.89531 0.93047 0.96711 0.88046 0.93594 0.91111 0.85806 0.81880 0.81269 0.88277 0.88166 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.06 9.64 71.98 0.69 -5.37 16 2 C 0.13 5.68 5.62 86.38 0.49 6.16 16 3 N -0.81 -37.69 2.92 -343.47 -1.00 -38.69 16 4 C -0.26 -11.84 7.11 84.03 0.60 -11.24 16 5 H 0.13 5.64 5.07 -2.91 -0.01 5.63 16 6 C 0.00 0.06 5.00 84.86 0.42 0.49 16 7 N -0.84 -36.39 8.10 21.65 0.18 -36.22 16 8 Si 0.98 34.85 29.63 68.60 2.03 36.88 16 9 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 10 H -0.28 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 12 S 2.54 122.03 5.16 -56.49 -0.29 121.74 16 13 O -1.02 -53.76 15.53 -128.00 -1.99 -55.75 16 14 O -1.00 -50.96 14.46 -128.00 -1.85 -52.81 16 15 C -0.69 -29.07 5.90 22.24 0.13 -28.94 16 16 C -0.01 -0.27 9.20 22.47 0.21 -0.07 16 17 C -0.07 -2.31 5.88 -20.04 -0.12 -2.43 16 18 C 0.22 6.79 7.94 137.38 1.09 7.88 16 19 N -0.30 -10.24 12.23 -52.18 -0.64 -10.88 16 20 N -0.05 -1.41 13.47 37.02 0.50 -0.92 16 21 N -0.20 -3.55 7.90 37.02 0.29 -3.25 16 22 H 0.50 3.14 8.96 -347.54 -3.12 0.03 16 23 N -0.29 -6.88 12.08 -52.13 -0.63 -7.51 16 24 C -0.03 -0.94 9.70 22.48 0.22 -0.72 16 25 C -0.14 -4.09 9.68 22.24 0.22 -3.87 16 26 C 0.03 1.14 5.88 -19.83 -0.12 1.02 16 27 C -0.18 -6.04 7.90 71.23 0.56 -5.48 16 28 H 0.09 3.85 6.09 -2.39 -0.01 3.84 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 4.68 5.92 -2.39 -0.01 4.66 16 32 H 0.05 2.10 6.96 -2.39 -0.02 2.08 16 33 H 0.28 11.29 8.31 -92.71 -0.77 10.51 16 34 H 0.12 5.42 7.16 -2.91 -0.02 5.40 16 35 H 0.16 3.40 7.88 -2.91 -0.02 3.38 16 36 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.10 3.50 6.69 -2.39 -0.02 3.49 16 38 H 0.10 2.66 8.08 -2.39 -0.02 2.64 16 39 H 0.09 3.65 3.45 -2.38 -0.01 3.64 16 Total: -1.00 -64.21 331.17 -0.99 -65.20 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -1.97 Total: 24.78 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 4.39 Total: -42.56 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -1.30 Total: -97.47 kcal Atomic # 8 Polarization: -104.71 SS G_CDS: -3.84 Total: -108.55 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: 122.03 SS G_CDS: -0.29 Total: 121.74 kcal Total: -64.21 -0.99 -65.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736511312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.639 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds