Wall clock time and date at job start Tue Mar 31 2020 20:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47291 * 2 1 4 4 C 1.36937 * 120.00238 * 273.33830 * 3 2 1 5 5 H 1.07998 * 120.00303 * 177.23844 * 4 3 2 6 6 C 1.38812 * 119.99692 * 357.24481 * 4 3 2 7 7 N 1.31621 * 120.00100 * 23.40566 * 6 4 3 8 8 Si 1.86796 * 120.00006 * 203.40550 * 6 4 3 9 9 H 1.48500 * 109.47131 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47299 * 119.99686 * 8 6 4 11 11 H 1.48496 * 109.47331 * 239.99769 * 8 6 4 12 12 S 1.65600 * 120.00016 * 93.34420 * 3 2 1 13 13 O 1.42099 * 106.40105 * 346.30273 * 12 3 2 14 14 O 1.42094 * 106.40226 * 213.38366 * 12 3 2 15 15 C 1.76195 * 107.22063 * 99.84122 * 12 3 2 16 16 C 1.38338 * 119.88365 * 116.39613 * 15 12 3 17 17 C 1.38006 * 120.11978 * 180.02562 * 16 15 12 18 18 C 1.39318 * 119.88333 * 0.02562 * 17 16 15 19 19 C 1.48465 * 120.11675 * 179.72093 * 18 17 16 20 20 N 1.34053 * 126.67149 * 179.68496 * 19 18 17 21 21 N 1.28983 * 107.26689 * 179.89490 * 20 19 18 22 22 N 1.28730 * 108.94428 * 0.37361 * 21 20 19 23 23 H 0.96999 * 125.34237 * 179.78978 * 22 21 20 24 24 N 1.28877 * 109.31582 * 359.75966 * 22 21 20 25 25 C 1.39275 * 119.76325 * 359.97438 * 18 17 16 26 26 C 1.38057 * 119.88397 * 0.02562 * 25 18 17 27 27 C 1.50700 * 119.94250 * 179.97438 * 26 25 18 28 28 H 1.09007 * 109.46891 * 59.99608 * 1 2 3 29 29 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47008 * 300.00099 * 1 2 3 31 31 H 1.08997 * 109.46887 * 239.99584 * 2 1 3 32 32 H 1.09000 * 109.46874 * 119.99986 * 2 1 3 33 33 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.93986 * 0.02562 * 16 15 12 35 35 H 1.08000 * 120.05982 * 180.02562 * 17 16 15 36 36 H 1.08001 * 120.05857 * 179.97438 * 25 18 17 37 37 H 1.09009 * 109.46952 * 262.95957 * 27 26 25 38 38 H 1.08999 * 109.47081 * 22.95036 * 27 26 25 39 39 H 1.08998 * 109.47130 * 142.95657 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1815 2.0498 -1.1839 5 1 2.4988 3.0821 -1.1818 6 6 1.9390 1.4006 -2.3866 7 7 1.1420 0.3537 -2.4204 8 14 2.7437 2.0129 -3.9573 9 1 3.5871 3.1965 -3.6525 10 1 3.5898 0.9364 -4.5322 11 1 1.6935 2.3929 -4.9359 12 16 2.3733 2.1339 1.4317 13 8 1.8095 1.3295 2.4585 14 8 2.0506 3.5063 1.2542 15 6 4.1209 2.0569 1.6424 16 6 4.8639 3.2234 1.6700 17 6 6.2331 3.1687 1.8342 18 6 6.8669 1.9358 1.9718 19 6 8.3403 1.8705 2.1425 20 7 9.0807 0.7630 2.2914 21 7 10.3099 1.1368 2.4064 22 7 10.3636 2.4215 2.3436 23 1 11.1725 2.9530 2.4070 24 7 9.1741 2.8906 2.1828 25 6 6.1141 0.7643 1.9432 26 6 4.7450 0.8304 1.7785 27 6 3.9293 -0.4364 1.7468 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.9728 -0.1002 -3.2608 34 1 4.3716 4.1787 1.5628 35 1 6.8121 4.0801 1.8560 36 1 6.6007 -0.1941 2.0490 37 1 3.7470 -0.7254 0.7117 38 1 4.4737 -1.2319 2.2556 39 1 2.9772 -0.2681 2.2502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736512565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:19 Heat of formation + Delta-G solvation = 103.705006 kcal Electronic energy + Delta-G solvation = -27401.681808 eV Core-core repulsion = 23475.793015 eV Total energy + Delta-G solvation = -3925.888793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -44.60892 -39.12255 -36.45910 -36.07161 -34.73179 -34.59029 -33.91086 -32.27899 -31.49674 -30.63192 -29.33877 -26.82536 -24.89331 -24.64390 -24.50687 -22.11253 -21.68802 -20.93894 -19.35378 -18.56854 -17.64643 -17.29515 -16.69726 -16.50981 -15.93626 -15.33318 -14.62475 -14.36029 -14.20780 -13.87961 -13.60983 -13.49215 -13.06161 -12.87306 -12.72570 -12.47815 -12.28277 -12.12489 -12.03498 -11.51821 -11.50014 -11.37684 -11.26589 -11.03720 -10.92103 -10.90915 -10.88450 -10.76855 -10.68314 -10.41289 -10.05083 -9.83774 -9.63202 -9.05994 -8.75957 -8.49830 -8.11053 -6.41887 -3.83669 0.54287 1.02221 1.50090 1.57942 2.05847 2.22990 3.14071 3.23060 3.27341 3.55453 3.75961 4.03266 4.06607 4.40812 4.68433 4.95612 4.97004 5.07110 5.12105 5.28964 5.38879 5.48518 5.71326 5.84194 5.92510 6.04928 6.13469 6.16139 6.20331 6.38333 6.46687 6.49721 6.62829 6.69429 6.75667 6.89726 7.08293 7.14600 7.30483 7.66867 7.81192 7.98104 8.37400 8.78088 9.17048 10.50071 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004050 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.050041 B = 6912.458021 C = 7664.083846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.119 3.881 3 N -0.820 5.820 4 C -0.284 4.284 5 H 0.112 0.888 6 C 0.046 3.954 7 N -0.837 5.837 8 Si 0.901 3.099 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.281 1.281 12 S 2.601 3.399 13 O -0.985 6.985 14 O -0.973 6.973 15 C -0.646 4.646 16 C -0.029 4.029 17 C -0.112 4.112 18 C 0.010 3.990 19 C 0.224 3.776 20 N -0.265 5.265 21 N -0.053 5.053 22 N -0.230 5.230 23 H 0.475 0.525 24 N -0.292 5.292 25 C -0.103 4.103 26 C 0.016 3.984 27 C -0.174 4.174 28 H 0.087 0.913 29 H 0.038 0.962 30 H 0.024 0.976 31 H 0.108 0.892 32 H 0.049 0.951 33 H 0.269 0.731 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.259 0.591 5.293 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.006 4.006 3 N -0.650 5.650 4 C -0.422 4.422 5 H 0.130 0.870 6 C -0.162 4.162 7 N -0.477 5.477 8 Si 0.727 3.273 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.207 1.207 12 S 2.692 3.308 13 O -0.974 6.974 14 O -0.963 6.963 15 C -0.725 4.725 16 C -0.048 4.048 17 C -0.133 4.133 18 C 0.007 3.993 19 C -0.055 4.055 20 N -0.138 5.138 21 N -0.048 5.048 22 N -0.076 5.076 23 H 0.329 0.671 24 N -0.143 5.143 25 C -0.124 4.124 26 C 0.014 3.986 27 C -0.230 4.230 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.303 0.542 6.032 13.712 hybrid contribution 1.591 0.702 -1.100 2.058 sum 13.894 1.245 4.931 14.795 Atomic orbital electron populations 1.22015 0.96604 0.99709 1.01564 1.21630 0.94815 0.82550 1.01635 1.53667 1.67016 1.23423 1.20900 1.19532 1.44094 0.95889 0.82720 0.87047 1.25191 0.95833 0.96189 0.99019 1.70214 1.29269 1.21169 1.27075 0.86290 0.79867 0.79190 0.82001 1.19113 1.20477 1.20657 1.07143 0.75627 0.73999 0.73985 1.93378 1.77420 1.69355 1.57265 1.93417 1.83154 1.33549 1.86187 1.32435 1.32486 0.97549 1.09991 1.20872 0.92984 0.97982 0.93008 1.21171 0.95014 0.96361 1.00777 1.17329 0.84044 0.95112 1.02839 1.23808 0.96515 0.84311 1.00904 1.76103 0.95373 1.25121 1.17235 1.78895 1.15659 0.95206 1.15015 1.47727 1.08777 1.05470 1.45601 0.67138 1.74952 0.91145 1.26703 1.21547 1.21100 0.93337 0.97419 1.00496 1.19396 0.93132 0.94117 0.91924 1.21891 1.02182 0.94247 1.04639 0.89438 0.94299 0.95734 0.87450 0.93318 0.92011 0.83814 0.84932 0.84590 0.88824 0.90663 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.65 37.16 0.36 -2.61 16 2 C 0.12 2.54 3.96 -4.04 -0.02 2.52 16 3 N -0.82 -18.75 2.82 -59.91 -0.17 -18.92 16 4 C -0.28 -6.85 9.47 -15.06 -0.14 -7.00 16 5 H 0.11 2.70 7.49 -52.49 -0.39 2.30 16 6 C 0.05 1.08 5.13 -17.43 -0.09 0.99 16 7 N -0.84 -19.50 8.06 55.49 0.45 -19.06 16 8 Si 0.90 18.54 29.61 -169.99 -5.03 13.51 16 9 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 S 2.60 57.48 4.99 -107.50 -0.54 56.95 16 13 O -0.98 -22.44 14.46 -57.17 -0.83 -23.27 16 14 O -0.97 -23.62 16.06 -57.17 -0.92 -24.54 16 15 C -0.65 -12.55 5.91 -39.52 -0.23 -12.78 16 16 C -0.03 -0.52 9.53 -39.63 -0.38 -0.90 16 17 C -0.11 -1.75 9.70 -39.26 -0.38 -2.13 16 18 C 0.01 0.16 5.88 -104.89 -0.62 -0.45 16 19 C 0.22 3.24 7.94 -156.30 -1.24 2.00 16 20 N -0.27 -3.80 12.23 32.16 0.39 -3.41 16 21 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 22 N -0.23 -2.08 7.90 60.35 0.48 -1.60 16 23 H 0.47 1.77 8.96 -340.37 -3.05 -1.28 16 24 N -0.29 -3.55 12.08 32.17 0.39 -3.16 16 25 C -0.10 -1.65 9.33 -39.26 -0.37 -2.02 16 26 C 0.02 0.28 5.87 -104.67 -0.61 -0.34 16 27 C -0.17 -2.83 7.83 36.01 0.28 -2.55 16 28 H 0.09 2.03 6.42 -51.93 -0.33 1.70 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.11 2.38 5.65 -51.93 -0.29 2.09 16 32 H 0.05 0.94 4.15 -51.93 -0.22 0.72 16 33 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 34 H 0.14 2.41 7.32 -52.49 -0.38 2.02 16 35 H 0.13 1.74 7.88 -52.49 -0.41 1.33 16 36 H 0.14 1.94 7.88 -52.49 -0.41 1.52 16 37 H 0.09 1.52 6.52 -51.92 -0.34 1.18 16 38 H 0.07 0.99 8.03 -51.93 -0.42 0.58 16 39 H 0.11 1.99 4.08 -51.93 -0.21 1.78 16 LS Contribution 332.20 15.07 5.01 5.01 Total: -1.00 -29.66 332.20 -9.84 -39.51 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.45 Total: 4.06 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -3.44 Total: -25.27 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 2.35 Total: -45.95 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -1.75 Total: -47.81 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: 57.48 SS G_CDS: -0.54 Total: 56.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.66 -9.84 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736512565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.212 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds