Wall clock time and date at job start Tue Mar 31 2020 20:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47291 * 2 1 4 4 C 1.36937 * 120.00238 * 273.33830 * 3 2 1 5 5 H 1.07998 * 120.00303 * 177.23844 * 4 3 2 6 6 C 1.38812 * 119.99692 * 357.24481 * 4 3 2 7 7 N 1.31621 * 120.00100 * 23.40566 * 6 4 3 8 8 Si 1.86796 * 120.00006 * 203.40550 * 6 4 3 9 9 H 1.48500 * 109.47131 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47299 * 119.99686 * 8 6 4 11 11 H 1.48496 * 109.47331 * 239.99769 * 8 6 4 12 12 S 1.65600 * 120.00016 * 93.34420 * 3 2 1 13 13 O 1.42099 * 106.40105 * 346.30273 * 12 3 2 14 14 O 1.42094 * 106.40226 * 213.38366 * 12 3 2 15 15 C 1.76195 * 107.22063 * 99.84122 * 12 3 2 16 16 C 1.38338 * 119.88365 * 116.39613 * 15 12 3 17 17 C 1.38006 * 120.11978 * 180.02562 * 16 15 12 18 18 C 1.39318 * 119.88333 * 0.02562 * 17 16 15 19 19 C 1.48465 * 120.11675 * 179.72093 * 18 17 16 20 20 N 1.34053 * 126.67149 * 179.68496 * 19 18 17 21 21 N 1.28983 * 107.26689 * 179.89490 * 20 19 18 22 22 N 1.28730 * 108.94428 * 0.37361 * 21 20 19 23 23 H 0.96999 * 125.34237 * 179.78978 * 22 21 20 24 24 N 1.28877 * 109.31582 * 359.75966 * 22 21 20 25 25 C 1.39275 * 119.76325 * 359.97438 * 18 17 16 26 26 C 1.38057 * 119.88397 * 0.02562 * 25 18 17 27 27 C 1.50700 * 119.94250 * 179.97438 * 26 25 18 28 28 H 1.09007 * 109.46891 * 59.99608 * 1 2 3 29 29 H 1.08996 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47008 * 300.00099 * 1 2 3 31 31 H 1.08997 * 109.46887 * 239.99584 * 2 1 3 32 32 H 1.09000 * 109.46874 * 119.99986 * 2 1 3 33 33 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.93986 * 0.02562 * 16 15 12 35 35 H 1.08000 * 120.05982 * 180.02562 * 17 16 15 36 36 H 1.08001 * 120.05857 * 179.97438 * 25 18 17 37 37 H 1.09009 * 109.46952 * 262.95957 * 27 26 25 38 38 H 1.08999 * 109.47081 * 22.95036 * 27 26 25 39 39 H 1.08998 * 109.47130 * 142.95657 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1815 2.0498 -1.1839 5 1 2.4988 3.0821 -1.1818 6 6 1.9390 1.4006 -2.3866 7 7 1.1420 0.3537 -2.4204 8 14 2.7437 2.0129 -3.9573 9 1 3.5871 3.1965 -3.6525 10 1 3.5898 0.9364 -4.5322 11 1 1.6935 2.3929 -4.9359 12 16 2.3733 2.1339 1.4317 13 8 1.8095 1.3295 2.4585 14 8 2.0506 3.5063 1.2542 15 6 4.1209 2.0569 1.6424 16 6 4.8639 3.2234 1.6700 17 6 6.2331 3.1687 1.8342 18 6 6.8669 1.9358 1.9718 19 6 8.3403 1.8705 2.1425 20 7 9.0807 0.7630 2.2914 21 7 10.3099 1.1368 2.4064 22 7 10.3636 2.4215 2.3436 23 1 11.1725 2.9530 2.4070 24 7 9.1741 2.8906 2.1828 25 6 6.1141 0.7643 1.9432 26 6 4.7450 0.8304 1.7785 27 6 3.9293 -0.4364 1.7468 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.9728 -0.1002 -3.2608 34 1 4.3716 4.1787 1.5628 35 1 6.8121 4.0801 1.8560 36 1 6.6007 -0.1941 2.0490 37 1 3.7470 -0.7254 0.7117 38 1 4.4737 -1.2319 2.2556 39 1 2.9772 -0.2681 2.2502 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736512565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:17 Heat of formation + Delta-G solvation = 83.677409 kcal Electronic energy + Delta-G solvation = -27402.550270 eV Core-core repulsion = 23475.793015 eV Total energy + Delta-G solvation = -3926.757255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -45.56820 -40.46353 -38.25740 -37.84540 -36.64961 -35.62288 -35.00782 -33.61363 -33.12071 -31.89612 -31.04482 -28.14292 -26.33230 -25.96681 -25.67255 -23.48475 -23.24817 -22.26266 -20.40660 -20.18987 -19.29751 -18.33993 -18.23658 -18.20104 -17.24913 -16.84481 -16.31527 -15.86815 -15.57298 -15.21021 -15.07210 -14.99682 -14.58549 -14.31216 -14.13385 -13.93387 -13.69263 -13.48095 -13.32279 -13.18397 -12.94346 -12.89088 -12.61981 -12.58370 -12.48490 -12.45634 -12.44347 -12.12079 -12.06115 -12.04327 -11.77308 -11.50265 -11.29154 -10.76918 -10.09103 -9.85436 -9.77668 -8.07647 -5.64765 -0.72725 -0.23616 0.05778 0.25906 1.04487 1.32868 1.49068 1.54347 1.63377 2.26687 2.47132 2.50094 2.72359 2.93078 3.02046 3.20331 3.56831 3.77115 3.88243 3.98745 4.16260 4.28505 4.40402 4.49335 4.50351 4.63474 4.74433 4.85103 4.90811 5.03414 5.05486 5.13961 5.19049 5.24189 5.30717 5.44314 5.54773 5.59739 5.74484 5.96741 6.08562 6.65544 7.01085 7.08612 7.45441 8.85974 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014017 B = 0.004050 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.050041 B = 6912.458021 C = 7664.083846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.122 3.878 3 N -0.847 5.847 4 C -0.328 4.328 5 H 0.097 0.903 6 C 0.014 3.986 7 N -0.869 5.869 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.284 1.284 12 S 2.652 3.348 13 O -0.992 6.992 14 O -1.000 7.000 15 C -0.668 4.668 16 C -0.037 4.037 17 C -0.106 4.106 18 C 0.022 3.978 19 C 0.205 3.795 20 N -0.285 5.285 21 N -0.052 5.052 22 N -0.196 5.196 23 H 0.497 0.503 24 N -0.284 5.284 25 C -0.102 4.102 26 C 0.012 3.988 27 C -0.178 4.178 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.267 0.733 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.563 0.602 6.627 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.002 4.002 3 N -0.679 5.679 4 C -0.461 4.461 5 H 0.115 0.885 6 C -0.190 4.190 7 N -0.509 5.509 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.203 1.203 11 H -0.210 1.210 12 S 2.746 3.254 13 O -0.982 6.982 14 O -0.990 6.990 15 C -0.754 4.754 16 C -0.056 4.056 17 C -0.127 4.127 18 C 0.019 3.981 19 C -0.075 4.075 20 N -0.157 5.157 21 N -0.046 5.046 22 N -0.047 5.047 23 H 0.356 0.644 24 N -0.137 5.137 25 C -0.123 4.123 26 C 0.010 3.990 27 C -0.233 4.233 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.549 0.552 7.249 17.165 hybrid contribution 0.886 0.822 -1.115 1.644 sum 16.436 1.374 6.134 17.597 Atomic orbital electron populations 1.22018 0.97192 1.00657 0.99927 1.21692 0.94491 0.81940 1.02124 1.53098 1.71773 1.23358 1.19651 1.19373 1.46789 0.96352 0.83536 0.88504 1.25572 0.96109 0.96865 1.00446 1.70278 1.31002 1.22530 1.27115 0.85494 0.78752 0.78428 0.79399 1.19519 1.20252 1.21015 1.03576 0.75885 0.72853 0.73072 1.93400 1.78072 1.69587 1.57176 1.93406 1.84035 1.35026 1.86577 1.31593 1.29292 0.99668 1.14824 1.21018 0.94175 0.97447 0.92950 1.21364 0.94025 0.97632 0.99680 1.17516 0.85136 0.94952 1.00542 1.23555 0.96113 0.85023 1.02802 1.76093 0.96059 1.25584 1.17975 1.78861 1.14720 0.96006 1.15059 1.47802 1.08936 1.05042 1.42931 0.64382 1.74906 0.91773 1.26224 1.20795 1.21287 0.92471 0.98710 0.99827 1.19590 0.94244 0.93704 0.91432 1.21926 1.01689 0.94863 1.04859 0.91727 0.92152 0.96503 0.88082 0.91437 0.92246 0.83441 0.82159 0.82469 0.88912 0.87188 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.07 9.65 71.98 0.69 -5.37 16 2 C 0.12 5.34 3.96 86.38 0.34 5.69 16 3 N -0.85 -39.77 2.82 -343.46 -0.97 -40.74 16 4 C -0.33 -16.50 9.47 84.03 0.80 -15.71 16 5 H 0.10 4.95 7.49 -2.91 -0.02 4.93 16 6 C 0.01 0.70 5.13 84.86 0.44 1.14 16 7 N -0.87 -42.24 8.06 21.65 0.17 -42.06 16 8 Si 0.95 39.45 29.61 68.60 2.03 41.48 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 12 S 2.65 118.14 4.99 -56.49 -0.28 117.86 16 13 O -0.99 -45.03 14.46 -128.00 -1.85 -46.88 16 14 O -1.00 -49.36 16.06 -128.00 -2.06 -51.42 16 15 C -0.67 -25.35 5.91 22.31 0.13 -25.22 16 16 C -0.04 -1.24 9.53 22.24 0.21 -1.03 16 17 C -0.11 -3.02 9.70 22.47 0.22 -2.80 16 18 C 0.02 0.62 5.88 -20.04 -0.12 0.51 16 19 C 0.20 5.20 7.94 137.38 1.09 6.29 16 20 N -0.28 -7.22 12.23 -52.18 -0.64 -7.85 16 21 N -0.05 -1.03 13.47 37.02 0.50 -0.53 16 22 N -0.20 -2.74 7.90 37.02 0.29 -2.44 16 23 H 0.50 1.55 8.96 -347.54 -3.12 -1.56 16 24 N -0.28 -5.78 12.08 -52.13 -0.63 -6.41 16 25 C -0.10 -3.01 9.33 22.48 0.21 -2.80 16 26 C 0.01 0.39 5.87 -19.89 -0.12 0.28 16 27 C -0.18 -5.49 7.83 71.24 0.56 -4.93 16 28 H 0.06 3.14 6.42 -2.38 -0.02 3.12 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 4.62 5.65 -2.39 -0.01 4.61 16 32 H 0.07 2.61 4.15 -2.39 -0.01 2.60 16 33 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 34 H 0.15 4.81 7.32 -2.91 -0.02 4.79 16 35 H 0.16 3.62 7.88 -2.91 -0.02 3.59 16 36 H 0.16 3.93 7.88 -2.91 -0.02 3.91 16 37 H 0.09 2.93 6.52 -2.38 -0.02 2.91 16 38 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 39 H 0.09 3.27 4.08 -2.39 -0.01 3.26 16 Total: -1.00 -64.71 332.20 -0.95 -65.67 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -1.98 Total: 17.29 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 4.45 Total: -43.95 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -1.27 Total: -100.04 kcal Atomic # 8 Polarization: -94.39 SS G_CDS: -3.91 Total: -98.30 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 118.14 SS G_CDS: -0.28 Total: 117.86 kcal Total: -64.71 -0.95 -65.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736512565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.344 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds