Wall clock time and date at job start Tue Mar 31 2020 20:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47284 * 2 1 4 4 C 1.36939 * 119.99895 * 275.24720 * 3 2 1 5 5 H 1.08002 * 119.99867 * 146.58182 * 4 3 2 6 6 C 1.38812 * 120.00159 * 326.58103 * 4 3 2 7 7 N 1.31622 * 119.99735 * 336.12591 * 6 4 3 8 8 Si 1.86800 * 120.00006 * 156.12320 * 6 4 3 9 9 H 1.48499 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47090 * 119.99954 * 8 6 4 11 11 H 1.48493 * 109.46980 * 239.99919 * 8 6 4 12 12 S 1.65595 * 119.99870 * 95.24502 * 3 2 1 13 13 O 1.42096 * 104.27677 * 153.93089 * 12 3 2 14 14 O 1.42097 * 104.27968 * 26.07144 * 12 3 2 15 15 C 1.81403 * 104.44994 * 269.99930 * 12 3 2 16 16 C 1.50701 * 109.47006 * 180.02562 * 15 12 3 17 17 C 1.38339 * 119.93951 * 270.02024 * 16 15 12 18 18 C 1.38295 * 120.23559 * 179.97438 * 17 16 15 19 19 C 1.38055 * 120.11669 * 0.02562 * 18 17 16 20 20 C 1.39274 * 119.87816 * 359.97438 * 19 18 17 21 21 C 1.48469 * 120.11498 * 180.02562 * 20 19 18 22 22 N 1.34041 * 126.67417 * 179.69211 * 21 20 19 23 23 N 1.28983 * 107.26950 * 179.84100 * 22 21 20 24 24 N 1.28734 * 108.94533 * 0.42809 * 23 22 21 25 25 H 0.96991 * 125.34837 * 179.74525 * 24 23 22 26 26 N 1.28879 * 109.31197 * 359.72887 * 24 23 22 27 27 C 1.38006 * 119.93992 * 90.00226 * 16 15 12 28 28 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46692 * 299.99621 * 1 2 3 30 30 H 1.08995 * 109.47482 * 59.99595 * 1 2 3 31 31 H 1.09000 * 109.46692 * 240.00379 * 2 1 3 32 32 H 1.08996 * 109.47167 * 120.00848 * 2 1 3 33 33 H 0.97002 * 119.99791 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46774 * 60.00081 * 15 12 3 35 35 H 1.09000 * 109.46992 * 299.99945 * 15 12 3 36 36 H 1.07996 * 119.88571 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.93933 * 180.02562 * 18 17 16 38 38 H 1.07990 * 120.05737 * 180.27698 * 19 18 17 39 39 H 1.07994 * 120.06119 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0629 -1.1810 5 1 1.9695 3.1282 -1.2108 6 6 2.4969 1.3846 -2.3397 7 7 3.1520 0.2456 -2.2620 8 14 2.0416 2.0884 -4.0091 9 1 1.3138 3.3696 -3.8244 10 1 3.2763 2.3303 -4.7978 11 1 1.1731 1.1250 -4.7321 12 16 2.4180 2.1181 1.4281 13 8 3.3745 3.1019 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9027 1.9791 16 6 1.1166 3.6150 3.2855 17 6 0.9322 2.9444 4.4813 18 6 1.1499 3.5920 5.6837 19 6 1.5523 4.9125 5.6963 20 6 1.7395 5.5923 4.4953 21 6 2.1728 7.0123 4.5027 22 7 2.3970 7.7866 3.4317 23 7 2.7525 8.9477 3.8664 24 7 2.7674 8.9257 5.1534 25 1 3.0047 9.6727 5.7247 26 7 2.4173 7.7552 5.5637 27 6 1.5191 4.9351 3.2867 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3986 -0.2281 -3.0717 34 1 0.1106 2.1407 2.1151 35 1 0.5477 3.6212 1.2289 36 1 0.6178 1.9112 4.4759 37 1 1.0048 3.0637 6.6144 38 1 1.7264 5.4159 6.6357 39 1 1.6635 5.4575 2.3526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736512587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:29 Heat of formation + Delta-G solvation = 88.960158 kcal Electronic energy + Delta-G solvation = -26653.736167 eV Core-core repulsion = 22727.207989 eV Total energy + Delta-G solvation = -3926.528178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.59143 -39.43686 -36.03506 -35.81542 -34.74720 -34.62528 -34.00405 -32.55897 -31.62790 -30.73382 -29.20599 -27.28425 -24.83620 -24.60931 -24.55703 -22.20050 -21.69960 -20.96457 -19.36296 -18.40665 -17.28385 -17.18447 -16.88950 -16.29910 -15.84228 -15.50605 -15.36650 -14.70891 -14.40615 -14.24849 -13.73918 -13.48999 -13.38104 -13.02326 -12.82021 -12.53721 -12.33618 -12.22764 -11.91612 -11.62544 -11.51604 -11.34611 -11.24144 -11.20326 -11.07548 -10.97925 -10.95220 -10.86912 -10.80811 -10.35795 -10.33521 -10.11748 -9.74378 -9.09723 -8.85511 -8.59392 -7.65737 -6.20277 -3.88578 0.56570 0.97004 1.09965 1.51405 2.06746 2.25550 3.23121 3.32251 3.35914 3.52227 3.70226 3.90177 4.05798 4.37569 4.61749 4.73366 4.87654 4.97969 5.01788 5.05555 5.15472 5.28179 5.36598 5.46255 5.63511 5.70285 5.90259 5.96979 6.10301 6.16579 6.24272 6.30293 6.31201 6.36630 6.45609 6.59580 6.77515 6.93238 7.31442 7.46656 7.84401 8.00417 8.47270 9.06445 9.43596 10.81642 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003490 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.358792 B = 8022.145021 C = 9279.798699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.845 5.845 4 C -0.287 4.287 5 H 0.092 0.908 6 C 0.038 3.962 7 N -0.858 5.858 8 Si 0.913 3.087 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.281 1.281 12 S 2.557 3.443 13 O -0.957 6.957 14 O -0.987 6.987 15 C -0.596 4.596 16 C -0.077 4.077 17 C -0.088 4.088 18 C -0.120 4.120 19 C -0.081 4.081 20 C -0.022 4.022 21 C 0.225 3.775 22 N -0.261 5.261 23 N -0.049 5.049 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.297 5.297 27 C -0.064 4.064 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.800 9.551 14.646 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.677 5.677 4 C -0.422 4.422 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.497 5.497 8 Si 0.739 3.261 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.655 3.345 13 O -0.947 6.947 14 O -0.977 6.977 15 C -0.719 4.719 16 C -0.079 4.079 17 C -0.107 4.107 18 C -0.138 4.138 19 C -0.101 4.101 20 C -0.025 4.025 21 C -0.054 4.054 22 N -0.134 5.134 23 N -0.044 5.044 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.149 5.149 27 C -0.085 4.085 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.710 10.046 14.776 18.758 hybrid contribution -0.827 0.561 -0.362 1.063 sum -6.537 10.607 14.414 19.052 Atomic orbital electron populations 1.22240 0.98934 1.00184 1.01007 1.21374 0.91322 0.84412 1.04965 1.52681 1.77039 1.20504 1.17448 1.19121 1.44934 0.93982 0.84150 0.89001 1.25293 0.95141 0.96877 0.99602 1.69994 1.33970 1.16849 1.28930 0.86105 0.78473 0.79156 0.82341 1.19179 1.20844 1.20717 1.07490 0.76257 0.75229 0.75532 1.93480 1.55675 1.63842 1.81692 1.93428 1.81534 1.52789 1.69945 1.29943 1.26565 1.12580 1.02765 1.19093 1.01380 0.93864 0.93557 1.21400 0.97262 1.00438 0.91629 1.21063 1.00275 0.94201 0.98257 1.21165 0.97470 0.94564 0.96950 1.17148 1.04523 0.86270 0.94561 1.23663 1.00701 0.96818 0.84257 1.76176 1.15379 0.96357 1.25467 1.78946 1.14777 1.17021 0.93663 1.47720 1.43094 1.10781 1.06029 0.67169 1.74888 1.19734 0.93458 1.26774 1.21220 0.95633 0.93620 0.98063 0.93279 0.94715 0.92097 0.86672 0.92149 0.92417 0.84656 0.84178 0.84606 0.84705 0.84780 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.11 2.36 5.98 -4.04 -0.02 2.34 16 3 N -0.85 -20.31 2.78 -59.91 -0.17 -20.48 16 4 C -0.29 -7.39 8.78 -15.06 -0.13 -7.52 16 5 H 0.09 2.29 7.94 -52.49 -0.42 1.87 16 6 C 0.04 0.97 4.98 -17.43 -0.09 0.89 16 7 N -0.86 -23.17 11.28 55.49 0.63 -22.55 16 8 Si 0.91 19.96 29.62 -169.99 -5.03 14.93 16 9 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 S 2.56 57.44 5.37 -107.50 -0.58 56.86 16 13 O -0.96 -24.92 17.22 -57.54 -0.99 -25.91 16 14 O -0.99 -23.69 16.53 -57.54 -0.95 -24.64 16 15 C -0.60 -9.84 6.30 36.01 0.23 -9.61 16 16 C -0.08 -1.21 5.13 -104.67 -0.54 -1.75 16 17 C -0.09 -1.18 9.69 -39.52 -0.38 -1.57 16 18 C -0.12 -1.36 10.03 -39.63 -0.40 -1.76 16 19 C -0.08 -0.96 9.70 -39.26 -0.38 -1.34 16 20 C -0.02 -0.31 5.88 -104.89 -0.62 -0.92 16 21 C 0.23 3.14 7.94 -156.31 -1.24 1.90 16 22 N -0.26 -3.92 12.23 32.16 0.39 -3.52 16 23 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 24 N -0.23 -2.02 7.90 60.35 0.48 -1.55 16 25 H 0.47 1.62 8.96 -340.37 -3.05 -1.43 16 26 N -0.30 -3.35 12.08 32.17 0.39 -2.97 16 27 C -0.06 -1.01 9.35 -39.26 -0.37 -1.38 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.12 2.83 5.31 -51.93 -0.28 2.56 16 32 H 0.06 1.32 6.81 -51.93 -0.35 0.97 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.14 1.89 6.92 -51.92 -0.36 1.53 16 35 H 0.14 2.13 8.08 -51.92 -0.42 1.71 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.28 7.88 -52.49 -0.41 0.86 16 39 H 0.14 2.31 7.89 -52.49 -0.41 1.90 16 LS Contribution 351.25 15.07 5.29 5.29 Total: -1.00 -34.77 351.25 -10.18 -44.95 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.89 Total: 2.61 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.56 Total: -23.26 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 2.53 Total: -50.84 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -1.94 Total: -50.55 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 57.44 SS G_CDS: -0.58 Total: 56.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.77 -10.18 -44.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736512587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.914 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds