Wall clock time and date at job start Tue Mar 31 2020 20:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47284 * 2 1 4 4 C 1.36939 * 119.99895 * 275.24720 * 3 2 1 5 5 H 1.08002 * 119.99867 * 146.58182 * 4 3 2 6 6 C 1.38812 * 120.00159 * 326.58103 * 4 3 2 7 7 N 1.31622 * 119.99735 * 336.12591 * 6 4 3 8 8 Si 1.86800 * 120.00006 * 156.12320 * 6 4 3 9 9 H 1.48499 * 109.47273 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47090 * 119.99954 * 8 6 4 11 11 H 1.48493 * 109.46980 * 239.99919 * 8 6 4 12 12 S 1.65595 * 119.99870 * 95.24502 * 3 2 1 13 13 O 1.42096 * 104.27677 * 153.93089 * 12 3 2 14 14 O 1.42097 * 104.27968 * 26.07144 * 12 3 2 15 15 C 1.81403 * 104.44994 * 269.99930 * 12 3 2 16 16 C 1.50701 * 109.47006 * 180.02562 * 15 12 3 17 17 C 1.38339 * 119.93951 * 270.02024 * 16 15 12 18 18 C 1.38295 * 120.23559 * 179.97438 * 17 16 15 19 19 C 1.38055 * 120.11669 * 0.02562 * 18 17 16 20 20 C 1.39274 * 119.87816 * 359.97438 * 19 18 17 21 21 C 1.48469 * 120.11498 * 180.02562 * 20 19 18 22 22 N 1.34041 * 126.67417 * 179.69211 * 21 20 19 23 23 N 1.28983 * 107.26950 * 179.84100 * 22 21 20 24 24 N 1.28734 * 108.94533 * 0.42809 * 23 22 21 25 25 H 0.96991 * 125.34837 * 179.74525 * 24 23 22 26 26 N 1.28879 * 109.31197 * 359.72887 * 24 23 22 27 27 C 1.38006 * 119.93992 * 90.00226 * 16 15 12 28 28 H 1.08998 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46692 * 299.99621 * 1 2 3 30 30 H 1.08995 * 109.47482 * 59.99595 * 1 2 3 31 31 H 1.09000 * 109.46692 * 240.00379 * 2 1 3 32 32 H 1.08996 * 109.47167 * 120.00848 * 2 1 3 33 33 H 0.97002 * 119.99791 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.46774 * 60.00081 * 15 12 3 35 35 H 1.09000 * 109.46992 * 299.99945 * 15 12 3 36 36 H 1.07996 * 119.88571 * 0.02562 * 17 16 15 37 37 H 1.07995 * 119.93933 * 180.02562 * 18 17 16 38 38 H 1.07990 * 120.05737 * 180.27698 * 19 18 17 39 39 H 1.07994 * 120.06119 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0629 -1.1810 5 1 1.9695 3.1282 -1.2108 6 6 2.4969 1.3846 -2.3397 7 7 3.1520 0.2456 -2.2620 8 14 2.0416 2.0884 -4.0091 9 1 1.3138 3.3696 -3.8244 10 1 3.2763 2.3303 -4.7978 11 1 1.1731 1.1250 -4.7321 12 16 2.4180 2.1181 1.4281 13 8 3.3745 3.1019 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9027 1.9791 16 6 1.1166 3.6150 3.2855 17 6 0.9322 2.9444 4.4813 18 6 1.1499 3.5920 5.6837 19 6 1.5523 4.9125 5.6963 20 6 1.7395 5.5923 4.4953 21 6 2.1728 7.0123 4.5027 22 7 2.3970 7.7866 3.4317 23 7 2.7525 8.9477 3.8664 24 7 2.7674 8.9257 5.1534 25 1 3.0047 9.6727 5.7247 26 7 2.4173 7.7552 5.5637 27 6 1.5191 4.9351 3.2867 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3986 -0.2281 -3.0717 34 1 0.1106 2.1407 2.1151 35 1 0.5477 3.6212 1.2289 36 1 0.6178 1.9112 4.4759 37 1 1.0048 3.0637 6.6144 38 1 1.7264 5.4159 6.6357 39 1 1.6635 5.4575 2.3526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736512587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:28 Heat of formation + Delta-G solvation = 63.269616 kcal Electronic energy + Delta-G solvation = -26654.850192 eV Core-core repulsion = 22727.207989 eV Total energy + Delta-G solvation = -3927.642203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -45.52175 -40.46489 -37.87970 -37.63573 -36.61604 -35.59903 -35.01382 -33.64910 -33.48424 -31.72158 -30.88069 -28.50575 -26.44259 -25.78127 -25.59857 -23.41094 -23.09183 -22.10462 -20.32806 -20.13999 -18.99433 -18.20272 -18.17813 -17.93550 -17.21211 -16.83068 -16.65295 -16.36431 -16.05032 -15.33746 -15.19543 -14.75285 -14.51201 -14.37262 -14.12014 -14.00600 -13.71719 -13.56841 -13.37618 -13.06304 -12.89553 -12.76089 -12.66087 -12.63883 -12.53103 -12.49211 -12.32912 -12.27677 -12.07717 -12.03060 -11.89568 -11.71427 -11.44903 -10.90082 -9.93188 -9.75650 -9.47856 -8.12418 -5.86880 -0.59915 -0.35507 0.12200 0.33505 1.23060 1.37881 1.49101 1.52127 1.64319 2.17666 2.55155 2.59337 2.68803 2.98010 3.07029 3.26238 3.40982 3.51528 3.86291 3.98506 4.08710 4.17899 4.29962 4.38268 4.47471 4.49200 4.54222 4.78668 4.80545 4.81060 4.92981 5.05723 5.27451 5.32974 5.35951 5.39155 5.55328 5.58719 5.69242 5.79645 6.02701 6.55706 7.05727 7.14506 7.50821 8.89335 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.003490 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.358792 B = 8022.145021 C = 9279.798699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.860 5.860 4 C -0.307 4.307 5 H 0.091 0.909 6 C -0.008 4.008 7 N -0.896 5.896 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.289 1.289 11 H -0.272 1.272 12 S 2.552 3.448 13 O -1.008 7.008 14 O -1.012 7.012 15 C -0.558 4.558 16 C -0.105 4.105 17 C -0.093 4.093 18 C -0.109 4.109 19 C -0.069 4.069 20 C -0.034 4.034 21 C 0.209 3.791 22 N -0.302 5.302 23 N -0.057 5.057 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.284 5.284 27 C -0.084 4.084 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.162 0.838 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 10.473 17.220 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.028 4.028 3 N -0.692 5.692 4 C -0.441 4.441 5 H 0.109 0.891 6 C -0.211 4.211 7 N -0.537 5.537 8 Si 0.797 3.203 9 H -0.181 1.181 10 H -0.216 1.216 11 H -0.197 1.197 12 S 2.656 3.344 13 O -0.998 6.998 14 O -1.002 7.002 15 C -0.687 4.687 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.127 4.127 19 C -0.090 4.090 20 C -0.038 4.038 21 C -0.071 4.071 22 N -0.173 5.173 23 N -0.052 5.052 24 N -0.048 5.048 25 H 0.356 0.644 26 N -0.137 5.137 27 C -0.106 4.106 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.186 0.814 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.194 0.806 38 H 0.180 0.820 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.728 10.944 17.294 21.876 hybrid contribution -0.180 0.418 -0.862 0.974 sum -7.907 11.362 16.432 21.485 Atomic orbital electron populations 1.22138 0.95239 1.02140 1.01961 1.21409 0.94429 0.83591 1.03382 1.52767 1.77679 1.21130 1.17575 1.19333 1.45282 0.94152 0.85318 0.89100 1.26093 0.94983 0.97248 1.02810 1.70112 1.35478 1.18378 1.29718 0.85194 0.77926 0.79041 0.78144 1.18057 1.21578 1.19713 1.07043 0.77929 0.74558 0.74846 1.93420 1.59485 1.64468 1.82427 1.93388 1.83234 1.53849 1.69693 1.29480 1.22032 1.13236 1.03980 1.19106 1.03832 0.94080 0.93692 1.21750 0.96714 1.01328 0.91526 1.21538 0.98152 0.93905 0.99078 1.21551 0.95580 0.94802 0.97031 1.17331 1.04840 0.86670 0.94909 1.23738 1.01659 0.97147 0.84577 1.76161 1.16965 0.97376 1.26838 1.78879 1.15193 1.16309 0.94776 1.47796 1.40598 1.10825 1.05559 0.64444 1.74836 1.19255 0.93777 1.25817 1.21204 0.96894 0.94116 0.98369 0.90834 0.92063 0.92777 0.89387 0.92642 0.92425 0.81368 0.82939 0.82792 0.80580 0.82042 0.85464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.30 10.21 71.98 0.73 -4.57 16 2 C 0.10 4.45 5.98 86.38 0.52 4.96 16 3 N -0.86 -42.22 2.78 -343.45 -0.95 -43.18 16 4 C -0.31 -16.24 8.78 84.03 0.74 -15.51 16 5 H 0.09 4.67 7.94 -2.91 -0.02 4.65 16 6 C -0.01 -0.43 4.98 84.86 0.42 -0.01 16 7 N -0.90 -50.27 11.28 21.65 0.24 -50.03 16 8 Si 0.97 41.71 29.62 68.60 2.03 43.74 16 9 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 S 2.55 116.55 5.37 -56.49 -0.30 116.24 16 13 O -1.01 -54.81 17.22 -127.65 -2.20 -57.01 16 14 O -1.01 -49.15 16.53 -127.65 -2.11 -51.26 16 15 C -0.56 -17.69 6.30 71.24 0.45 -17.24 16 16 C -0.11 -3.15 5.13 -19.90 -0.10 -3.25 16 17 C -0.09 -2.23 9.69 22.31 0.22 -2.02 16 18 C -0.11 -2.02 10.03 22.24 0.22 -1.80 16 19 C -0.07 -1.40 9.70 22.48 0.22 -1.19 16 20 C -0.03 -0.92 5.88 -20.04 -0.12 -1.04 16 21 C 0.21 5.60 7.94 137.38 1.09 6.69 16 22 N -0.30 -9.04 12.23 -52.18 -0.64 -9.67 16 23 N -0.06 -1.33 13.47 37.02 0.50 -0.83 16 24 N -0.20 -3.04 7.90 37.02 0.29 -2.75 16 25 H 0.50 2.06 8.96 -347.55 -3.12 -1.05 16 26 N -0.28 -5.78 12.08 -52.13 -0.63 -6.41 16 27 C -0.08 -2.64 9.35 22.48 0.21 -2.43 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.06 1.72 6.98 -2.39 -0.02 1.70 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 4.50 5.31 -2.39 -0.01 4.48 16 32 H 0.06 2.48 6.81 -2.39 -0.02 2.46 16 33 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.17 4.17 6.92 -2.39 -0.02 4.16 16 35 H 0.15 4.50 8.08 -2.39 -0.02 4.48 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.16 2.35 7.88 -2.92 -0.02 2.33 16 39 H 0.13 4.28 7.89 -2.91 -0.02 4.26 16 Total: -1.00 -79.91 351.25 -1.17 -81.07 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -2.00 Total: 17.46 kcal Atomic # 6 Polarization: -41.98 SS G_CDS: 4.60 Total: -37.39 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -1.19 Total: -112.86 kcal Atomic # 8 Polarization: -103.96 SS G_CDS: -4.31 Total: -108.27 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Atomic # 16 Polarization: 116.55 SS G_CDS: -0.30 Total: 116.24 kcal Total: -79.91 -1.17 -81.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736512587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.345 kcal (2) G-P(sol) polarization free energy of solvation -79.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds