Wall clock time and date at job start Tue Mar 31 2020 20:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46913 * 2 1 4 4 C 1.46496 * 120.00183 * 275.00107 * 3 2 1 5 5 C 1.50703 * 109.46862 * 275.00023 * 4 3 2 6 6 H 1.07994 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99696 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99763 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00317 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47314 * 89.99497 * 9 7 5 11 11 H 1.48499 * 109.47350 * 209.99889 * 9 7 5 12 12 H 1.48499 * 109.46968 * 329.99856 * 9 7 5 13 13 S 1.65599 * 119.99739 * 95.00238 * 3 2 1 14 14 O 1.42100 * 106.40147 * 336.45612 * 13 3 2 15 15 O 1.42104 * 106.40345 * 203.53930 * 13 3 2 16 16 C 1.76193 * 107.21941 * 89.99745 * 13 3 2 17 17 C 1.38334 * 119.94399 * 270.01993 * 16 13 3 18 18 C 1.38293 * 120.24319 * 179.97438 * 17 16 13 19 19 C 1.38052 * 120.11340 * 0.02562 * 18 17 16 20 20 C 1.39285 * 119.88073 * 359.97438 * 19 18 17 21 21 C 1.48467 * 120.11394 * 180.02562 * 20 19 18 22 22 N 1.34047 * 126.66918 * 179.68907 * 21 20 19 23 23 N 1.28987 * 107.26543 * 179.83549 * 22 21 20 24 24 N 1.28729 * 108.94255 * 0.43596 * 23 22 21 25 25 H 0.97000 * 125.33735 * 179.74524 * 24 23 22 26 26 N 1.28868 * 109.31909 * 359.71969 * 24 23 22 27 27 C 1.38007 * 119.94205 * 90.00180 * 16 13 3 28 28 H 1.08999 * 109.47217 * 299.99834 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99526 * 1 2 3 30 30 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47217 * 240.00166 * 2 1 3 32 32 H 1.08996 * 109.46941 * 120.00221 * 2 1 3 33 33 H 1.08998 * 109.46960 * 35.00054 * 4 3 2 34 34 H 1.09000 * 109.47408 * 155.00579 * 4 3 2 35 35 H 0.97001 * 119.99482 * 180.02562 * 8 7 5 36 36 H 1.08000 * 119.88112 * 0.02562 * 17 16 13 37 37 H 1.08000 * 119.94440 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.05965 * 180.27537 * 19 18 17 39 39 H 1.08001 * 120.05687 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8822 6 1 4.1720 1.1112 -1.3839 7 6 3.8525 2.3607 -3.0848 8 7 5.0187 2.0812 -3.6248 9 14 2.6808 3.5324 -3.9471 10 1 2.9451 4.9209 -3.4919 11 1 2.8852 3.4454 -5.4154 12 1 1.2805 3.1623 -3.6195 13 16 2.4122 2.1201 1.4287 14 8 1.6868 1.4414 2.4448 15 8 2.3057 3.5186 1.1999 16 6 4.1169 1.7940 1.7320 17 6 4.4882 0.6698 2.4475 18 6 5.8245 0.4076 2.6887 19 6 6.7954 1.2679 2.2164 20 6 6.4271 2.4012 1.4954 21 6 7.4670 3.3296 0.9845 22 7 7.2625 4.4486 0.2753 23 7 8.4194 4.9647 0.0325 24 7 9.3286 4.2142 0.5494 25 1 10.2836 4.3784 0.5052 26 7 8.7710 3.2109 1.1352 27 6 5.0795 2.6604 1.2550 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3617 1.8098 -1.9452 34 1 2.0922 3.1803 -1.0755 35 1 5.2705 2.4838 -4.4706 36 1 3.7319 -0.0060 2.8184 37 1 6.1090 -0.4717 3.2475 38 1 7.8389 1.0599 2.4014 39 1 4.7886 3.5374 0.6959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736535257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:42 Heat of formation + Delta-G solvation = 83.964913 kcal Electronic energy + Delta-G solvation = -27457.710354 eV Core-core repulsion = 23530.965567 eV Total energy + Delta-G solvation = -3926.744788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.29422 -39.03942 -36.79385 -36.19985 -35.33206 -34.28071 -33.50090 -32.61064 -31.12102 -30.47865 -30.23146 -27.14733 -24.74856 -24.41285 -22.96515 -22.68338 -21.74930 -21.45856 -19.20737 -18.42617 -17.48775 -16.99873 -16.94622 -16.78898 -15.86640 -15.75377 -15.04663 -14.87094 -14.24802 -13.99551 -13.85503 -13.49413 -13.47250 -13.03332 -12.75500 -12.48943 -12.22986 -12.12339 -12.02042 -11.93116 -11.62283 -11.46987 -11.28757 -11.22685 -11.13414 -11.01467 -10.97607 -10.89328 -10.59904 -10.45506 -10.27675 -10.12542 -9.57545 -9.18827 -8.62165 -8.59980 -8.12488 -6.11764 -4.12554 0.68343 0.95348 1.20986 1.37946 2.33751 2.43856 3.30539 3.36667 3.40456 3.46941 3.74602 3.84073 4.25554 4.33160 4.39567 4.75641 5.00143 5.10281 5.13470 5.21529 5.33837 5.46599 5.54177 5.63328 5.69968 5.73815 5.75397 6.00204 6.01820 6.23387 6.25052 6.29337 6.42275 6.47798 6.51509 6.60615 6.86694 6.88246 7.11002 7.36389 7.56071 8.30203 8.43354 8.91488 9.48937 11.00518 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.005975 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.694991 B = 4684.839032 C = 6660.832619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.975 5.975 4 C 0.212 3.788 5 C -0.544 4.544 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.865 3.135 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.263 1.263 13 S 2.690 3.310 14 O -0.972 6.972 15 O -0.956 6.956 16 C -0.669 4.669 17 C -0.005 4.005 18 C -0.149 4.149 19 C -0.032 4.032 20 C -0.040 4.040 21 C 0.228 3.772 22 N -0.251 5.251 23 N -0.049 5.049 24 N -0.233 5.233 25 H 0.473 0.527 26 N -0.301 5.301 27 C 0.050 3.950 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -2.821 11.113 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.813 5.813 4 C 0.089 3.911 5 C -0.583 4.583 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.692 3.308 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.187 1.187 13 S 2.779 3.221 14 O -0.962 6.962 15 O -0.946 6.946 16 C -0.754 4.754 17 C -0.025 4.025 18 C -0.168 4.168 19 C -0.052 4.052 20 C -0.044 4.044 21 C -0.052 4.052 22 N -0.124 5.124 23 N -0.044 5.044 24 N -0.078 5.078 25 H 0.326 0.674 26 N -0.153 5.153 27 C 0.029 3.971 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.046 -1.750 11.127 11.968 hybrid contribution 0.982 -0.044 -0.811 1.275 sum 5.028 -1.794 10.316 11.615 Atomic orbital electron populations 1.22225 0.96656 1.01694 1.02444 1.21091 0.93717 0.82276 1.02872 1.57194 1.78053 1.23344 1.22726 1.19669 0.98417 0.92314 0.80738 1.21411 1.00910 1.29420 1.06517 0.90218 1.24816 0.94885 0.95852 0.96824 1.69894 1.20516 1.43668 1.18781 0.87002 0.82142 0.82570 0.79085 1.19449 1.21146 1.18723 1.01972 0.73630 0.73707 0.72746 1.93522 1.69778 1.75899 1.57008 1.93557 1.86019 1.29805 1.85243 1.31172 1.26585 1.05091 1.12541 1.21029 0.97117 0.93241 0.91123 1.21099 0.92581 1.00398 1.02701 1.21358 1.00318 0.91351 0.92191 1.17238 0.89861 0.94528 1.02766 1.23537 0.88958 0.94666 0.98056 1.76218 1.14598 1.07980 1.13591 1.78943 0.92394 1.18018 1.15055 1.47665 1.12701 1.13481 1.33918 0.67364 1.74816 1.09028 1.11483 1.19933 1.20946 0.90308 0.96643 0.89191 0.92393 0.92174 0.92019 0.89652 0.91360 0.94107 0.93627 0.92610 0.84175 0.84629 0.84625 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.13 2.04 6.06 -4.04 -0.02 2.02 16 3 N -0.97 -19.02 2.77 -115.66 -0.32 -19.34 16 4 C 0.21 4.83 4.50 -5.19 -0.02 4.81 16 5 C -0.54 -14.31 9.94 -34.44 -0.34 -14.65 16 6 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.21 5.47 -17.81 -0.10 2.12 16 8 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 9 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 13 S 2.69 51.61 5.64 -107.50 -0.61 51.01 16 14 O -0.97 -18.20 16.25 -57.17 -0.93 -19.12 16 15 O -0.96 -20.95 15.83 -57.17 -0.91 -21.85 16 16 C -0.67 -11.94 5.97 -39.63 -0.24 -12.18 16 17 C -0.01 -0.07 9.52 -39.53 -0.38 -0.45 16 18 C -0.15 -1.90 10.03 -39.63 -0.40 -2.30 16 19 C -0.03 -0.45 9.70 -39.26 -0.38 -0.83 16 20 C -0.04 -0.69 5.88 -104.89 -0.62 -1.31 16 21 C 0.23 3.99 7.94 -156.31 -1.24 2.75 16 22 N -0.25 -4.80 12.23 32.16 0.39 -4.41 16 23 N -0.05 -0.77 13.47 60.35 0.81 0.04 16 24 N -0.23 -2.79 7.90 60.35 0.48 -2.31 16 25 H 0.47 2.99 8.96 -340.37 -3.05 -0.06 16 26 N -0.30 -4.33 12.08 32.17 0.39 -3.94 16 27 C 0.05 0.97 9.17 -39.26 -0.36 0.61 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 32 H 0.07 0.95 7.61 -51.93 -0.40 0.56 16 33 H 0.04 0.90 7.17 -51.93 -0.37 0.53 16 34 H 0.05 1.08 6.34 -51.93 -0.33 0.75 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.72 7.61 -52.49 -0.40 1.32 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.56 7.88 -52.49 -0.41 1.15 16 39 H 0.16 3.24 7.44 -52.49 -0.39 2.85 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -34.63 352.74 -10.04 -44.67 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.05 Total: 0.72 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.72 Total: -21.48 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 2.53 Total: -55.49 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.83 Total: -40.97 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.61 Total: 51.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.63 -10.04 -44.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736535257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.631 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds