Wall clock time and date at job start Tue Mar 31 2020 20:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46913 * 2 1 4 4 C 1.46496 * 120.00183 * 275.00107 * 3 2 1 5 5 C 1.50703 * 109.46862 * 275.00023 * 4 3 2 6 6 H 1.07994 * 119.99983 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99696 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99763 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00317 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47314 * 89.99497 * 9 7 5 11 11 H 1.48499 * 109.47350 * 209.99889 * 9 7 5 12 12 H 1.48499 * 109.46968 * 329.99856 * 9 7 5 13 13 S 1.65599 * 119.99739 * 95.00238 * 3 2 1 14 14 O 1.42100 * 106.40147 * 336.45612 * 13 3 2 15 15 O 1.42104 * 106.40345 * 203.53930 * 13 3 2 16 16 C 1.76193 * 107.21941 * 89.99745 * 13 3 2 17 17 C 1.38334 * 119.94399 * 270.01993 * 16 13 3 18 18 C 1.38293 * 120.24319 * 179.97438 * 17 16 13 19 19 C 1.38052 * 120.11340 * 0.02562 * 18 17 16 20 20 C 1.39285 * 119.88073 * 359.97438 * 19 18 17 21 21 C 1.48467 * 120.11394 * 180.02562 * 20 19 18 22 22 N 1.34047 * 126.66918 * 179.68907 * 21 20 19 23 23 N 1.28987 * 107.26543 * 179.83549 * 22 21 20 24 24 N 1.28729 * 108.94255 * 0.43596 * 23 22 21 25 25 H 0.97000 * 125.33735 * 179.74524 * 24 23 22 26 26 N 1.28868 * 109.31909 * 359.71969 * 24 23 22 27 27 C 1.38007 * 119.94205 * 90.00180 * 16 13 3 28 28 H 1.08999 * 109.47217 * 299.99834 * 1 2 3 29 29 H 1.09005 * 109.46916 * 59.99526 * 1 2 3 30 30 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47217 * 240.00166 * 2 1 3 32 32 H 1.08996 * 109.46941 * 120.00221 * 2 1 3 33 33 H 1.08998 * 109.46960 * 35.00054 * 4 3 2 34 34 H 1.09000 * 109.47408 * 155.00579 * 4 3 2 35 35 H 0.97001 * 119.99482 * 180.02562 * 8 7 5 36 36 H 1.08000 * 119.88112 * 0.02562 * 17 16 13 37 37 H 1.08000 * 119.94440 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.05965 * 180.27537 * 19 18 17 39 39 H 1.08001 * 120.05687 * 359.97438 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4948 1.7889 -1.8822 6 1 4.1720 1.1112 -1.3839 7 6 3.8525 2.3607 -3.0848 8 7 5.0187 2.0812 -3.6248 9 14 2.6808 3.5324 -3.9471 10 1 2.9451 4.9209 -3.4919 11 1 2.8852 3.4454 -5.4154 12 1 1.2805 3.1623 -3.6195 13 16 2.4122 2.1201 1.4287 14 8 1.6868 1.4414 2.4448 15 8 2.3057 3.5186 1.1999 16 6 4.1169 1.7940 1.7320 17 6 4.4882 0.6698 2.4475 18 6 5.8245 0.4076 2.6887 19 6 6.7954 1.2679 2.2164 20 6 6.4271 2.4012 1.4954 21 6 7.4670 3.3296 0.9845 22 7 7.2625 4.4486 0.2753 23 7 8.4194 4.9647 0.0325 24 7 9.3286 4.2142 0.5494 25 1 10.2836 4.3784 0.5052 26 7 8.7710 3.2109 1.1352 27 6 5.0795 2.6604 1.2550 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.3617 1.8098 -1.9452 34 1 2.0922 3.1803 -1.0755 35 1 5.2705 2.4838 -4.4706 36 1 3.7319 -0.0060 2.8184 37 1 6.1090 -0.4717 3.2475 38 1 7.8389 1.0599 2.4014 39 1 4.7886 3.5374 0.6959 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736535257.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:41 Heat of formation + Delta-G solvation = 57.683541 kcal Electronic energy + Delta-G solvation = -27458.850000 eV Core-core repulsion = 23530.965567 eV Total energy + Delta-G solvation = -3927.884433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.51984 -40.24222 -38.34632 -37.75219 -36.90511 -35.52070 -34.73293 -34.62848 -32.33948 -31.75771 -31.68830 -28.91323 -25.94996 -25.67858 -24.58759 -23.95922 -23.15236 -22.86269 -20.40296 -19.83945 -19.06482 -18.74109 -18.39810 -18.19748 -17.30728 -17.06763 -16.45910 -16.21189 -16.02590 -15.47256 -15.14969 -14.78993 -14.68224 -14.57727 -14.29027 -14.08658 -13.69989 -13.51517 -13.44828 -13.33753 -13.17028 -13.06678 -12.75998 -12.56505 -12.54077 -12.48774 -12.31524 -12.21484 -12.09630 -12.07438 -11.81638 -11.63367 -11.54108 -10.74034 -10.40125 -9.84327 -9.73936 -8.25885 -6.28647 -0.59911 -0.42843 -0.07375 0.13634 1.16929 1.36492 1.38019 1.41917 1.46801 2.00720 2.36846 2.48732 2.58588 2.80238 3.08866 3.10932 3.35059 3.82864 3.92817 3.97424 4.00159 4.23030 4.31280 4.41826 4.49206 4.52015 4.58231 4.76287 4.81097 4.96304 4.99711 5.05592 5.09458 5.15878 5.22305 5.45929 5.47306 5.51090 5.58684 5.73542 5.82740 6.32666 6.75884 7.05605 7.35282 8.89097 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.005975 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.694991 B = 4684.839032 C = 6660.832619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.980 5.980 4 C 0.219 3.781 5 C -0.530 4.530 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.936 5.936 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.281 1.281 12 H -0.236 1.236 13 S 2.697 3.303 14 O -0.967 6.967 15 O -0.993 6.993 16 C -0.682 4.682 17 C -0.008 4.008 18 C -0.130 4.130 19 C -0.025 4.025 20 C -0.058 4.058 21 C 0.209 3.791 22 N -0.303 5.303 23 N -0.058 5.058 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.283 5.283 27 C 0.018 3.982 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.169 0.831 37 H 0.188 0.812 38 H 0.167 0.833 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.408 -4.930 12.665 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.818 5.818 4 C 0.094 3.906 5 C -0.569 4.569 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.576 5.576 9 Si 0.740 3.260 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.159 1.159 13 S 2.789 3.211 14 O -0.957 6.957 15 O -0.984 6.984 16 C -0.769 4.769 17 C -0.028 4.028 18 C -0.148 4.148 19 C -0.045 4.045 20 C -0.063 4.063 21 C -0.071 4.071 22 N -0.174 5.174 23 N -0.053 5.053 24 N -0.047 5.047 25 H 0.355 0.645 26 N -0.136 5.136 27 C -0.004 4.004 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.186 0.814 37 H 0.205 0.795 38 H 0.184 0.816 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.168 -3.858 12.685 13.898 hybrid contribution 1.118 0.525 -1.164 1.697 sum 5.286 -3.334 11.521 13.106 Atomic orbital electron populations 1.22219 0.95011 1.03616 1.01921 1.21426 0.95177 0.80521 1.03917 1.57159 1.78640 1.24623 1.21370 1.19394 0.96707 0.92199 0.82285 1.21596 1.01795 1.27705 1.05834 0.93026 1.25576 0.96308 0.97633 0.97942 1.70024 1.22545 1.45603 1.19457 0.86181 0.81714 0.80039 0.78097 1.20218 1.20669 1.15863 1.01536 0.74110 0.72857 0.72588 1.93512 1.70210 1.75512 1.56496 1.93505 1.86896 1.32265 1.85707 1.30879 1.24956 1.06707 1.14401 1.21491 0.99105 0.92194 0.90021 1.21683 0.91147 1.01005 1.01006 1.21785 1.02332 0.89824 0.90514 1.17475 0.89040 0.95939 1.03812 1.23731 0.90038 0.94734 0.98610 1.76197 1.16231 1.09543 1.15462 1.78854 0.92342 1.18458 1.15680 1.47743 1.13592 1.11943 1.31438 0.64456 1.74757 1.07676 1.11603 1.19563 1.20737 0.91987 0.96621 0.91024 0.92831 0.92786 0.88885 0.90074 0.88897 0.92746 0.94713 0.92805 0.81357 0.79496 0.81600 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 10.24 71.98 0.74 -3.70 16 2 C 0.11 3.51 6.06 86.38 0.52 4.03 16 3 N -0.98 -38.09 2.77 -519.85 -1.44 -39.53 16 4 C 0.22 10.07 4.50 85.63 0.39 10.46 16 5 C -0.53 -28.69 9.94 25.60 0.25 -28.43 16 6 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 7 C 0.02 1.39 5.47 84.65 0.46 1.85 16 8 N -0.94 -57.15 13.96 21.45 0.30 -56.85 16 9 Si 0.92 43.53 27.47 68.60 1.88 45.42 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 13 S 2.70 104.31 5.64 -56.49 -0.32 103.99 16 14 O -0.97 -35.02 16.25 -128.00 -2.08 -37.10 16 15 O -0.99 -45.49 15.83 -128.00 -2.03 -47.52 16 16 C -0.68 -24.45 5.97 22.24 0.13 -24.31 16 17 C -0.01 -0.22 9.52 22.31 0.21 -0.01 16 18 C -0.13 -2.81 10.03 22.24 0.22 -2.58 16 19 C -0.02 -0.63 9.70 22.48 0.22 -0.41 16 20 C -0.06 -2.05 5.88 -20.04 -0.12 -2.17 16 21 C 0.21 7.45 7.94 137.38 1.09 8.54 16 22 N -0.30 -12.14 12.23 -52.18 -0.64 -12.77 16 23 N -0.06 -1.88 13.47 37.02 0.50 -1.38 16 24 N -0.20 -4.50 7.90 37.02 0.29 -4.21 16 25 H 0.50 5.35 8.96 -347.54 -3.12 2.24 16 26 N -0.28 -7.85 12.08 -52.13 -0.63 -8.48 16 27 C 0.02 0.73 9.17 22.48 0.21 0.93 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 32 H 0.09 2.36 7.61 -2.39 -0.02 2.34 16 33 H 0.05 2.36 7.17 -2.39 -0.02 2.34 16 34 H 0.03 1.69 6.34 -2.39 -0.02 1.67 16 35 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.17 3.49 7.61 -2.91 -0.02 3.46 16 37 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.17 3.17 7.88 -2.91 -0.02 3.15 16 39 H 0.12 5.52 7.44 -2.91 -0.02 5.50 16 Total: -1.00 -79.24 352.74 -1.89 -81.14 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.06 Total: 13.10 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.33 Total: -35.80 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -1.62 Total: -123.23 kcal Atomic # 8 Polarization: -80.51 SS G_CDS: -4.11 Total: -84.62 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 16 Polarization: 104.31 SS G_CDS: -0.32 Total: 103.99 kcal Total: -79.24 -1.89 -81.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736535257.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.819 kcal (2) G-P(sol) polarization free energy of solvation -79.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds