Wall clock time and date at job start Tue Mar 31 2020 20:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39689 * 120.00194 * 2 1 4 4 C 1.39001 * 120.01654 * 121.65697 * 3 2 1 5 5 C 1.38160 * 120.16401 * 180.02562 * 4 3 2 6 6 C 1.38098 * 120.19310 * 0.02562 * 5 4 3 7 7 C 1.39314 * 120.03488 * 359.97438 * 6 5 4 8 8 C 1.48476 * 120.08618 * 180.02562 * 7 6 5 9 9 N 1.34046 * 126.67535 * 179.68621 * 8 7 6 10 10 N 1.28984 * 107.26410 * 179.89947 * 9 8 7 11 11 N 1.28731 * 108.94608 * 0.37148 * 10 9 8 12 12 H 0.97004 * 125.34256 * 179.77979 * 11 10 9 13 13 N 1.28867 * 109.31734 * 359.76543 * 11 10 9 14 14 C 1.38699 * 120.01851 * 301.68267 * 3 2 1 15 15 S 1.65597 * 119.99767 * 179.97438 * 2 1 3 16 16 O 1.42098 * 104.27884 * 31.92051 * 15 2 1 17 17 O 1.42103 * 104.27834 * 159.77837 * 15 2 1 18 18 C 1.81398 * 104.44955 * 275.84809 * 15 2 1 19 19 C 1.53004 * 109.46965 * 180.02562 * 18 15 2 20 20 C 1.50699 * 109.47295 * 180.02562 * 19 18 15 21 21 H 1.08003 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00256 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46887 * 89.99338 * 24 22 20 26 26 H 1.48492 * 109.47138 * 209.99708 * 24 22 20 27 27 H 1.48498 * 109.46756 * 329.99820 * 24 22 20 28 28 H 1.09006 * 109.46651 * 89.99908 * 1 2 3 29 29 H 1.08988 * 109.47287 * 209.99953 * 1 2 3 30 30 H 1.09000 * 109.47100 * 330.00396 * 1 2 3 31 31 H 1.08003 * 119.91987 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.90491 * 180.02562 * 5 4 3 33 33 H 1.08009 * 119.98667 * 180.27766 * 6 5 4 34 34 H 1.08000 * 120.09351 * 359.95380 * 14 3 2 35 35 H 1.08997 * 109.47233 * 299.99803 * 18 15 2 36 36 H 1.08998 * 109.47156 * 60.00366 * 18 15 2 37 37 H 1.09002 * 109.47553 * 300.00290 * 19 18 15 38 38 H 1.08997 * 109.47398 * 59.99936 * 19 18 15 39 39 H 0.97002 * 120.00280 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2097 0.0000 4 6 3.0582 1.4960 1.0245 5 6 3.7503 2.6918 1.0278 6 6 3.5566 3.6092 0.0139 7 6 2.6619 3.3306 -1.0170 8 6 2.4532 4.3158 -2.1080 9 7 1.6345 4.1828 -3.1611 10 7 1.7435 5.2558 -3.8685 11 7 2.5953 6.0415 -3.3078 12 1 2.8598 6.9128 -3.6421 13 7 3.0413 5.4889 -2.2324 14 6 1.9642 2.1260 -1.0220 15 16 2.2930 -1.4341 0.0006 16 8 1.4559 -2.3224 -0.7271 17 8 3.5873 -1.0918 -0.4755 18 6 2.3642 -1.9149 1.7483 19 6 3.1150 -3.2413 1.8822 20 6 3.1737 -3.6410 3.3340 21 1 2.7212 -3.0117 4.0861 22 6 3.8060 -4.8096 3.7023 23 7 4.3575 -5.5757 2.7866 24 14 3.8795 -5.3047 5.5020 25 1 2.6932 -6.1331 5.8362 26 1 5.1162 -6.0883 5.7498 27 1 3.8872 -4.0861 6.3506 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.2129 0.7820 1.8199 32 1 4.4448 2.9098 1.8256 33 1 4.1028 4.5410 0.0174 34 1 1.2698 1.9056 -1.8192 35 1 2.8852 -1.1441 2.3162 36 1 1.3517 -2.0294 2.1352 37 1 2.5945 -4.0124 1.3142 38 1 4.1276 -3.1264 1.4954 39 1 4.8021 -6.3980 3.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736842071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:13 Heat of formation + Delta-G solvation = 82.554217 kcal Electronic energy + Delta-G solvation = -26113.956786 eV Core-core repulsion = 22187.150826 eV Total energy + Delta-G solvation = -3926.805960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.72476 -39.73502 -36.72097 -36.18530 -35.48306 -34.62405 -33.95091 -33.64605 -31.25857 -30.86050 -30.05535 -26.32239 -25.69110 -25.01067 -24.65542 -22.27714 -22.17837 -21.29292 -19.58799 -18.83584 -17.76790 -17.41065 -17.10729 -16.52005 -16.13011 -15.81403 -15.52734 -14.99607 -14.59134 -14.57106 -14.29336 -13.80805 -13.66046 -13.43498 -13.12628 -12.70063 -12.62041 -12.54065 -12.16268 -11.81027 -11.71656 -11.65469 -11.62729 -11.59653 -11.43299 -11.25608 -11.14718 -11.09888 -10.98956 -10.47975 -10.41240 -10.01140 -9.66091 -9.16493 -8.94707 -8.53085 -8.47314 -6.15035 -4.21090 0.46541 0.58500 0.93627 1.18688 1.94598 2.12380 2.82891 3.24567 3.31008 3.33377 3.41116 3.57763 3.93312 4.20445 4.35353 4.47562 4.69005 4.82139 4.85161 4.94504 5.12464 5.17525 5.20426 5.32451 5.35362 5.46541 5.52898 5.60495 5.71692 5.74868 5.84355 6.04286 6.14484 6.23626 6.26551 6.41953 6.45394 6.90505 7.25652 7.31138 7.77515 7.86747 8.13404 8.82230 9.43950 10.95936 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.002587 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.404085 B =10820.808418 C =11382.342110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.962 5.962 3 C 0.165 3.835 4 C -0.111 4.111 5 C -0.098 4.098 6 C -0.088 4.088 7 C -0.010 4.010 8 C 0.226 3.774 9 N -0.267 5.267 10 N -0.050 5.050 11 N -0.229 5.229 12 H 0.475 0.525 13 N -0.294 5.294 14 C -0.082 4.082 15 S 2.578 3.422 16 O -0.954 6.954 17 O -0.949 6.949 18 C -0.587 4.587 19 C 0.028 3.972 20 C -0.521 4.521 21 H 0.062 0.938 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 23.845 -6.694 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.789 5.789 3 C 0.071 3.929 4 C -0.132 4.132 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.014 4.014 8 C -0.054 4.054 9 N -0.140 5.140 10 N -0.045 5.045 11 N -0.075 5.075 12 H 0.329 0.671 13 N -0.145 5.145 14 C -0.105 4.105 15 S 2.678 3.322 16 O -0.944 6.944 17 O -0.939 6.939 18 C -0.720 4.720 19 C -0.011 4.011 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.145 4.145 23 N -0.527 5.527 24 Si 0.728 3.272 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.995 23.441 -8.130 25.308 hybrid contribution 0.243 0.192 1.697 1.725 sum -4.752 23.633 -6.433 24.950 Atomic orbital electron populations 1.21601 0.77321 1.03508 1.02912 1.55761 1.15308 1.19287 1.88591 1.17090 0.95025 0.86958 0.93825 1.21568 0.96911 0.97852 0.96882 1.20920 0.99132 0.92855 0.98718 1.21140 0.96737 1.00046 0.93001 1.17001 1.00503 0.91712 0.92194 1.23679 0.93945 0.91681 0.96089 1.76123 1.20046 1.14076 1.03725 1.78925 1.08109 0.97189 1.20293 1.47729 1.26681 1.18868 1.14208 0.67075 1.74920 1.23409 1.10228 1.05984 1.21149 0.99669 0.92354 0.97330 1.06318 0.73797 0.72393 0.79654 1.93561 1.68021 1.62933 1.69923 1.93575 1.39138 1.81713 1.79503 1.30533 1.10424 1.11128 1.19948 1.18985 0.95130 0.86855 1.00125 1.20978 1.36895 1.06850 0.91297 0.91967 1.25070 0.95075 0.96304 0.98021 1.69952 1.36112 1.13519 1.33165 0.86462 0.77689 0.78678 0.84420 1.20444 1.20992 1.19738 0.91810 0.90219 0.90683 0.84851 0.84351 0.84723 0.84216 0.86093 0.85967 0.94780 0.94705 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.96 59.85 0.60 1.58 16 2 N -0.96 -13.53 3.18 -65.42 -0.21 -13.74 16 3 C 0.17 2.23 4.81 -83.82 -0.40 1.83 16 4 C -0.11 -1.37 9.26 -39.33 -0.36 -1.73 16 5 C -0.10 -1.00 10.03 -39.66 -0.40 -1.40 16 6 C -0.09 -0.90 9.69 -39.23 -0.38 -1.28 16 7 C -0.01 -0.12 5.87 -104.92 -0.62 -0.73 16 8 C 0.23 2.62 7.94 -156.30 -1.24 1.37 16 9 N -0.27 -3.28 12.23 32.16 0.39 -2.88 16 10 N -0.05 -0.50 13.47 60.35 0.81 0.32 16 11 N -0.23 -1.59 7.90 60.35 0.48 -1.12 16 12 H 0.48 0.88 8.96 -340.36 -3.05 -2.17 16 13 N -0.29 -2.79 12.08 32.18 0.39 -2.40 16 14 C -0.08 -1.04 9.32 -39.05 -0.36 -1.40 16 15 S 2.58 47.01 5.08 -107.50 -0.55 46.47 16 16 O -0.95 -19.80 17.31 -57.54 -1.00 -20.79 16 17 O -0.95 -19.86 16.83 -57.54 -0.97 -20.83 16 18 C -0.59 -10.87 6.12 37.16 0.23 -10.64 16 19 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 20 C -0.52 -14.05 9.11 -34.44 -0.31 -14.37 16 21 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 24 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.81 7.94 -51.94 -0.41 0.39 16 30 H 0.07 0.63 8.05 -51.93 -0.42 0.22 16 31 H 0.13 1.54 6.61 -52.48 -0.35 1.20 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.10 7.88 -52.48 -0.41 0.69 16 34 H 0.14 1.72 7.88 -52.49 -0.41 1.30 16 35 H 0.12 1.96 6.69 -51.93 -0.35 1.61 16 36 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -36.78 355.46 -10.13 -46.91 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.06 Total: -3.03 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -3.49 Total: -24.69 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 2.60 Total: -45.21 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.96 Total: -41.63 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 47.01 SS G_CDS: -0.55 Total: 46.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.78 -10.13 -46.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736842071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.459 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds