Wall clock time and date at job start Tue Mar 31 2020 20:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39689 * 120.00194 * 2 1 4 4 C 1.39001 * 120.01654 * 121.65697 * 3 2 1 5 5 C 1.38160 * 120.16401 * 180.02562 * 4 3 2 6 6 C 1.38098 * 120.19310 * 0.02562 * 5 4 3 7 7 C 1.39314 * 120.03488 * 359.97438 * 6 5 4 8 8 C 1.48476 * 120.08618 * 180.02562 * 7 6 5 9 9 N 1.34046 * 126.67535 * 179.68621 * 8 7 6 10 10 N 1.28984 * 107.26410 * 179.89947 * 9 8 7 11 11 N 1.28731 * 108.94608 * 0.37148 * 10 9 8 12 12 H 0.97004 * 125.34256 * 179.77979 * 11 10 9 13 13 N 1.28867 * 109.31734 * 359.76543 * 11 10 9 14 14 C 1.38699 * 120.01851 * 301.68267 * 3 2 1 15 15 S 1.65597 * 119.99767 * 179.97438 * 2 1 3 16 16 O 1.42098 * 104.27884 * 31.92051 * 15 2 1 17 17 O 1.42103 * 104.27834 * 159.77837 * 15 2 1 18 18 C 1.81398 * 104.44955 * 275.84809 * 15 2 1 19 19 C 1.53004 * 109.46965 * 180.02562 * 18 15 2 20 20 C 1.50699 * 109.47295 * 180.02562 * 19 18 15 21 21 H 1.08003 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00256 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00116 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00171 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46887 * 89.99338 * 24 22 20 26 26 H 1.48492 * 109.47138 * 209.99708 * 24 22 20 27 27 H 1.48498 * 109.46756 * 329.99820 * 24 22 20 28 28 H 1.09006 * 109.46651 * 89.99908 * 1 2 3 29 29 H 1.08988 * 109.47287 * 209.99953 * 1 2 3 30 30 H 1.09000 * 109.47100 * 330.00396 * 1 2 3 31 31 H 1.08003 * 119.91987 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.90491 * 180.02562 * 5 4 3 33 33 H 1.08009 * 119.98667 * 180.27766 * 6 5 4 34 34 H 1.08000 * 120.09351 * 359.95380 * 14 3 2 35 35 H 1.08997 * 109.47233 * 299.99803 * 18 15 2 36 36 H 1.08998 * 109.47156 * 60.00366 * 18 15 2 37 37 H 1.09002 * 109.47553 * 300.00290 * 19 18 15 38 38 H 1.08997 * 109.47398 * 59.99936 * 19 18 15 39 39 H 0.97002 * 120.00280 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1635 1.2097 0.0000 4 6 3.0582 1.4960 1.0245 5 6 3.7503 2.6918 1.0278 6 6 3.5566 3.6092 0.0139 7 6 2.6619 3.3306 -1.0170 8 6 2.4532 4.3158 -2.1080 9 7 1.6345 4.1828 -3.1611 10 7 1.7435 5.2558 -3.8685 11 7 2.5953 6.0415 -3.3078 12 1 2.8598 6.9128 -3.6421 13 7 3.0413 5.4889 -2.2324 14 6 1.9642 2.1260 -1.0220 15 16 2.2930 -1.4341 0.0006 16 8 1.4559 -2.3224 -0.7271 17 8 3.5873 -1.0918 -0.4755 18 6 2.3642 -1.9149 1.7483 19 6 3.1150 -3.2413 1.8822 20 6 3.1737 -3.6410 3.3340 21 1 2.7212 -3.0117 4.0861 22 6 3.8060 -4.8096 3.7023 23 7 4.3575 -5.5757 2.7866 24 14 3.8795 -5.3047 5.5020 25 1 2.6932 -6.1331 5.8362 26 1 5.1162 -6.0883 5.7498 27 1 3.8872 -4.0861 6.3506 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.2129 0.7820 1.8199 32 1 4.4448 2.9098 1.8256 33 1 4.1028 4.5410 0.0174 34 1 1.2698 1.9056 -1.8192 35 1 2.8852 -1.1441 2.3162 36 1 1.3517 -2.0294 2.1352 37 1 2.5945 -4.0124 1.3142 38 1 4.1276 -3.1264 1.4954 39 1 4.8021 -6.3980 3.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736842071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:12 Heat of formation + Delta-G solvation = 55.192887 kcal Electronic energy + Delta-G solvation = -26115.143263 eV Core-core repulsion = 22187.150826 eV Total energy + Delta-G solvation = -3927.992436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.48206 -40.64352 -38.27474 -37.24256 -36.97283 -35.90309 -35.40042 -34.45088 -33.15466 -31.73167 -30.94649 -27.65075 -27.22770 -25.82906 -25.48112 -23.76058 -23.09698 -22.59072 -20.42020 -19.97436 -19.19750 -18.51375 -18.15972 -17.97877 -17.26469 -17.09313 -16.73432 -16.52531 -16.09771 -15.65479 -15.19751 -15.10498 -14.70053 -14.53298 -14.39375 -14.10187 -13.74873 -13.66823 -13.41164 -13.28045 -13.20375 -13.03410 -12.91900 -12.78902 -12.50175 -12.47852 -12.41258 -12.22457 -12.12307 -12.10206 -11.97283 -11.74113 -11.25376 -10.63837 -10.62894 -9.81520 -9.43059 -8.24319 -6.38374 -0.87653 -0.34370 0.15552 0.29878 1.26880 1.40230 1.43427 1.44958 1.55783 1.57597 2.39749 2.61291 2.68652 2.78425 3.07659 3.09742 3.16823 3.65979 3.88729 3.96725 4.05699 4.07725 4.15647 4.30568 4.39938 4.49912 4.54407 4.65557 4.72650 4.83874 4.89652 4.92905 5.26123 5.26571 5.30396 5.34043 5.40356 5.55716 5.61922 5.69873 5.96403 6.06531 6.75441 7.09601 7.31994 8.88003 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.024504 B = 0.002587 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.404085 B =10820.808418 C =11382.342110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.952 5.952 3 C 0.143 3.857 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.080 4.080 7 C -0.017 4.017 8 C 0.211 3.789 9 N -0.298 5.298 10 N -0.057 5.057 11 N -0.198 5.198 12 H 0.495 0.505 13 N -0.287 5.287 14 C -0.092 4.092 15 S 2.597 3.403 16 O -0.986 6.986 17 O -0.982 6.982 18 C -0.580 4.580 19 C 0.021 3.979 20 C -0.536 4.536 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.935 5.935 24 Si 0.974 3.026 25 H -0.272 1.272 26 H -0.285 1.285 27 H -0.255 1.255 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.006 0.994 38 H 0.008 0.992 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.273 26.512 -5.004 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.782 5.782 3 C 0.049 3.951 4 C -0.149 4.149 5 C -0.110 4.110 6 C -0.101 4.101 7 C -0.021 4.021 8 C -0.068 4.068 9 N -0.170 5.170 10 N -0.052 5.052 11 N -0.049 5.049 12 H 0.355 0.645 13 N -0.139 5.139 14 C -0.115 4.115 15 S 2.698 3.302 16 O -0.976 6.976 17 O -0.972 6.972 18 C -0.713 4.713 19 C -0.018 4.018 20 C -0.575 4.575 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.797 3.203 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.179 1.179 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.187 0.813 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.024 0.976 38 H 0.026 0.974 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.207 26.129 -6.453 27.413 hybrid contribution 0.313 -0.440 1.076 1.203 sum -4.894 25.689 -5.377 26.698 Atomic orbital electron populations 1.21929 0.75385 1.05319 1.03814 1.55252 1.16333 1.18126 1.88491 1.17276 0.96194 0.86670 0.94927 1.21807 0.97120 0.99027 0.96961 1.21286 0.98677 0.91744 0.99281 1.21434 0.95819 1.00760 0.92056 1.17157 1.00654 0.91478 0.92804 1.23699 0.94555 0.92352 0.96241 1.76107 1.21168 1.15231 1.04488 1.78868 1.08789 0.97202 1.20309 1.47802 1.24985 1.19137 1.12996 0.64519 1.74874 1.23039 1.09542 1.06483 1.21145 1.00234 0.92960 0.97180 1.05428 0.72991 0.72742 0.79049 1.93513 1.68594 1.64839 1.70694 1.93520 1.41175 1.82454 1.80024 1.30391 1.11337 1.08409 1.21201 1.18835 0.94283 0.89569 0.99112 1.21497 1.36375 1.07111 0.92485 0.90261 1.26121 0.94679 0.96457 1.03021 1.70105 1.37405 1.14186 1.35765 0.85314 0.77653 0.78791 0.78521 1.19704 1.21029 1.17903 0.91521 0.89457 0.87816 0.84401 0.81287 0.82397 0.84653 0.83455 0.83389 0.97592 0.97379 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 9.96 127.77 1.27 2.90 16 2 N -0.95 -26.26 3.18 -360.90 -1.15 -27.41 16 3 C 0.14 3.75 4.81 38.18 0.18 3.94 16 4 C -0.13 -2.96 9.26 22.43 0.21 -2.75 16 5 C -0.09 -1.64 10.03 22.22 0.22 -1.42 16 6 C -0.08 -1.43 9.69 22.50 0.22 -1.21 16 7 C -0.02 -0.38 5.87 -20.06 -0.12 -0.49 16 8 C 0.21 4.62 7.94 137.38 1.09 5.71 16 9 N -0.30 -7.11 12.23 -52.17 -0.64 -7.75 16 10 N -0.06 -1.06 13.47 37.02 0.50 -0.56 16 11 N -0.20 -2.33 7.90 37.02 0.29 -2.04 16 12 H 0.50 0.54 8.96 -347.53 -3.12 -2.57 16 13 N -0.29 -4.81 12.08 -52.12 -0.63 -5.44 16 14 C -0.09 -2.29 9.32 22.61 0.21 -2.08 16 15 S 2.60 96.07 5.08 -56.49 -0.29 95.78 16 16 O -0.99 -42.07 17.31 -127.65 -2.21 -44.28 16 17 O -0.98 -42.15 16.83 -127.65 -2.15 -44.30 16 18 C -0.58 -21.26 6.12 71.98 0.44 -20.82 16 19 C 0.02 1.08 4.98 29.85 0.15 1.23 16 20 C -0.54 -28.89 9.11 25.60 0.23 -28.66 16 21 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 23 N -0.94 -56.37 13.29 21.45 0.28 -56.08 16 24 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 30 H 0.10 1.55 8.05 -2.39 -0.02 1.53 16 31 H 0.14 2.96 6.61 -2.91 -0.02 2.94 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.16 2.05 7.88 -2.91 -0.02 2.02 16 34 H 0.14 3.39 7.88 -2.91 -0.02 3.36 16 35 H 0.15 4.56 6.69 -2.39 -0.02 4.55 16 36 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -81.47 355.46 -1.39 -82.86 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -2.01 Total: 8.21 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 4.57 Total: -43.45 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -1.34 Total: -99.27 kcal Atomic # 8 Polarization: -84.22 SS G_CDS: -4.36 Total: -88.58 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 96.07 SS G_CDS: -0.29 Total: 95.78 kcal Total: -81.47 -1.39 -82.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736842071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.057 kcal (2) G-P(sol) polarization free energy of solvation -81.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds