Wall clock time and date at job start Tue Mar 31 2020 19:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38047 * 119.93923 * 2 1 4 4 C 1.39279 * 119.88050 * 180.02562 * 3 2 1 5 5 C 1.48473 * 120.11715 * 180.27607 * 4 3 2 6 6 N 1.34049 * 126.67170 * 359.40800 * 5 4 3 7 7 N 1.28981 * 107.26590 * 179.89660 * 6 5 4 8 8 N 1.28733 * 108.94431 * 0.37420 * 7 6 5 9 9 H 0.97001 * 125.33962 * 179.78680 * 8 7 6 10 10 N 1.28869 * 109.31785 * 359.76363 * 8 7 6 11 11 C 1.39313 * 119.76794 * 0.02562 * 4 3 2 12 12 C 1.38009 * 119.87945 * 359.97438 * 11 4 3 13 13 C 1.38295 * 119.94572 * 180.02562 * 2 1 3 14 14 S 1.76205 * 119.87729 * 359.95654 * 13 2 1 15 15 O 1.42102 * 106.39904 * 178.54858 * 14 13 2 16 16 O 1.42096 * 106.40249 * 311.46556 * 14 13 2 17 17 N 1.65597 * 107.21904 * 65.00599 * 14 13 2 18 18 C 1.46507 * 120.00053 * 64.55092 * 17 14 13 19 19 H 1.09003 * 109.46888 * 335.94853 * 18 17 14 20 20 C 1.53001 * 109.47246 * 95.94362 * 18 17 14 21 21 C 1.50698 * 109.47210 * 215.94875 * 18 17 14 22 22 H 1.07995 * 119.99819 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00020 * 180.02562 * 21 18 17 24 24 N 1.31507 * 120.00017 * 179.97438 * 23 21 18 25 25 Si 1.86801 * 119.99980 * 359.97438 * 23 21 18 26 26 H 1.48498 * 109.47122 * 89.99966 * 25 23 21 27 27 H 1.48502 * 109.47177 * 210.00299 * 25 23 21 28 28 H 1.48502 * 109.47081 * 330.00244 * 25 23 21 29 29 H 1.09007 * 109.47077 * 264.50225 * 1 2 3 30 30 H 1.08992 * 109.47503 * 24.49815 * 1 2 3 31 31 H 1.09003 * 109.47033 * 144.50871 * 1 2 3 32 32 H 1.07997 * 120.06270 * 0.04484 * 3 2 1 33 33 H 1.08008 * 120.06293 * 179.97438 * 11 4 3 34 34 H 1.08001 * 119.94109 * 179.97438 * 12 11 4 35 35 H 0.96992 * 120.00400 * 244.55117 * 17 14 13 36 36 H 1.08998 * 109.47338 * 300.00360 * 20 18 17 37 37 H 1.08997 * 109.46956 * 60.00011 * 20 18 17 38 38 H 1.08998 * 109.47062 * 180.02562 * 20 18 17 39 39 H 0.96999 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5887 1.1948 -0.0005 5 6 4.3351 2.4783 0.0056 6 7 3.8081 3.7109 0.0010 7 7 4.7900 4.5471 0.0114 8 7 5.8976 3.8911 0.0144 9 1 6.7836 4.2860 0.0190 10 7 5.6447 2.6275 0.0110 11 6 4.2792 -0.0152 -0.0016 12 6 3.5806 -1.2054 -0.0016 13 6 2.1973 -1.1983 -0.0005 14 16 1.3116 -2.7216 -0.0001 15 8 2.2880 -3.7534 -0.0353 16 8 0.3303 -2.6148 1.0221 17 7 0.4865 -2.8093 -1.4331 18 6 1.2215 -2.8856 -2.6982 19 1 2.2153 -2.4572 -2.5673 20 6 1.3494 -4.3489 -3.1264 21 6 0.4780 -2.1150 -3.7585 22 1 -0.4495 -1.6185 -3.5146 23 6 0.9813 -2.0447 -5.0402 24 7 0.3321 -1.3726 -5.9656 25 14 2.5853 -2.9041 -5.4622 26 1 2.3003 -4.2889 -5.9162 27 1 3.2754 -2.1598 -6.5462 28 1 3.4553 -2.9467 -4.2595 29 1 -0.3633 -0.0985 1.0230 30 1 -0.3634 0.9351 -0.4261 31 1 -0.3633 -0.8367 -0.5967 32 1 1.6560 2.1316 0.0007 33 1 5.3592 -0.0218 -0.0025 34 1 4.1148 -2.1440 -0.0029 35 1 -0.4834 -2.8102 -1.4351 36 1 1.8872 -4.9062 -2.3594 37 1 0.3557 -4.7773 -3.2572 38 1 1.8967 -4.4056 -4.0673 39 1 0.6864 -1.3228 -6.8672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737223192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:16 Heat of formation + Delta-G solvation = 82.614050 kcal Electronic energy + Delta-G solvation = -27095.586666 eV Core-core repulsion = 23168.783300 eV Total energy + Delta-G solvation = -3926.803365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.70275 -39.44870 -36.93643 -35.81427 -35.48084 -34.72834 -34.07979 -32.55924 -32.21462 -30.94296 -29.27519 -27.04704 -25.17601 -25.05807 -24.78588 -22.38319 -21.30799 -21.08787 -19.47011 -19.18695 -17.79864 -17.38171 -17.19474 -16.35180 -16.24138 -15.96580 -15.32265 -14.61267 -14.47574 -14.11613 -13.87994 -13.67383 -13.27047 -13.14490 -12.99318 -12.48976 -12.43971 -12.38928 -12.23090 -12.16958 -11.82022 -11.69468 -11.60600 -11.57160 -11.48256 -11.27823 -11.15251 -11.11621 -10.74401 -10.56735 -10.23186 -9.60806 -9.41809 -9.08868 -8.87001 -8.78426 -8.53197 -6.22395 -4.24517 0.26810 0.84340 0.93653 1.30926 1.97565 2.02901 3.19624 3.29975 3.31457 3.37895 3.40403 3.61354 3.94166 4.10949 4.27485 4.62814 4.78146 4.90675 4.98215 5.10027 5.14138 5.21384 5.39851 5.50909 5.63889 5.80370 5.86740 5.93861 6.02185 6.12786 6.18946 6.23052 6.24151 6.30245 6.49065 6.56793 6.76343 6.93508 7.19884 7.37366 7.78939 7.88940 8.34696 8.79498 9.37323 10.89851 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.004478 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.589458 B = 6250.924898 C = 7529.323148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.031 3.969 3 C -0.099 4.099 4 C 0.032 3.968 5 C 0.217 3.783 6 N -0.261 5.261 7 N -0.049 5.049 8 N -0.227 5.227 9 H 0.476 0.524 10 N -0.287 5.287 11 C -0.112 4.112 12 C -0.020 4.020 13 C -0.655 4.655 14 S 2.691 3.309 15 O -0.964 6.964 16 O -0.970 6.970 17 N -1.091 6.091 18 C 0.247 3.753 19 H 0.040 0.960 20 C -0.172 4.172 21 C -0.527 4.527 22 H 0.085 0.915 23 C 0.078 3.922 24 N -0.891 5.891 25 Si 0.878 3.122 26 H -0.274 1.274 27 H -0.295 1.295 28 H -0.263 1.263 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.150 0.850 35 H 0.415 0.585 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.885 6.591 12.438 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 C -0.120 4.120 4 C 0.029 3.971 5 C -0.063 4.063 6 N -0.134 5.134 7 N -0.044 5.044 8 N -0.073 5.073 9 H 0.330 0.670 10 N -0.139 5.139 11 C -0.133 4.133 12 C -0.040 4.040 13 C -0.741 4.741 14 S 2.779 3.221 15 O -0.954 6.954 16 O -0.960 6.960 17 N -0.853 5.853 18 C 0.141 3.859 19 H 0.057 0.943 20 C -0.231 4.231 21 C -0.566 4.566 22 H 0.103 0.897 23 C -0.126 4.126 24 N -0.528 5.528 25 Si 0.708 3.292 26 H -0.201 1.201 27 H -0.222 1.222 28 H -0.188 1.188 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.157 0.843 34 H 0.168 0.832 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.154 6.729 12.905 17.193 hybrid contribution 1.415 0.209 -0.922 1.702 sum 10.569 6.939 11.983 17.420 Atomic orbital electron populations 1.21303 0.89528 1.05176 1.04265 1.19439 0.96360 0.91045 0.90209 1.21129 0.92150 0.98807 0.99912 1.17420 0.92306 0.86875 1.00540 1.23715 0.86415 0.94367 1.01769 1.76116 1.21718 0.98348 1.17181 1.78926 0.88477 1.22310 1.14698 1.47740 1.11609 1.01983 1.46002 0.66985 1.74937 1.17696 0.99775 1.21500 1.21167 1.00545 0.90784 1.00786 1.20885 0.91956 0.99141 0.91981 1.31125 1.06445 1.20617 1.15934 1.01937 0.73526 0.73773 0.72898 1.93548 1.62189 1.53015 1.86658 1.93565 1.59249 1.87246 1.55923 1.55356 1.18242 1.89941 1.21747 1.18891 0.92122 0.93191 0.81657 0.94256 1.22606 1.01535 0.99044 0.99894 1.21082 1.10085 1.32527 0.92887 0.89717 1.24870 0.96874 0.94759 0.96113 1.69859 1.38968 1.40915 1.03012 0.87009 0.84391 0.79374 0.78475 1.20051 1.22206 1.18795 0.88645 0.89650 0.90015 0.83822 0.84279 0.83233 0.74932 0.93492 0.92134 0.93388 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.60 36.01 0.31 -1.72 16 2 C 0.03 0.47 5.87 -104.67 -0.61 -0.14 16 3 C -0.10 -1.42 9.33 -39.26 -0.37 -1.79 16 4 C 0.03 0.45 5.88 -104.89 -0.62 -0.16 16 5 C 0.22 2.91 7.94 -156.30 -1.24 1.66 16 6 N -0.26 -3.53 12.23 32.16 0.39 -3.14 16 7 N -0.05 -0.55 13.47 60.35 0.81 0.27 16 8 N -0.23 -1.90 7.90 60.35 0.48 -1.42 16 9 H 0.48 1.49 8.96 -340.37 -3.05 -1.56 16 10 N -0.29 -3.23 12.08 32.17 0.39 -2.84 16 11 C -0.11 -1.52 9.70 -39.27 -0.38 -1.91 16 12 C -0.02 -0.31 9.53 -39.63 -0.38 -0.68 16 13 C -0.66 -10.67 5.72 -39.53 -0.23 -10.89 16 14 S 2.69 46.66 4.85 -107.50 -0.52 46.13 16 15 O -0.96 -18.43 16.33 -57.17 -0.93 -19.37 16 16 O -0.97 -17.31 16.45 -57.17 -0.94 -18.25 16 17 N -1.09 -19.93 4.27 -5.88 -0.03 -19.95 16 18 C 0.25 5.38 2.36 -69.08 -0.16 5.21 16 19 H 0.04 0.87 6.89 -51.93 -0.36 0.51 16 20 C -0.17 -3.61 9.00 37.16 0.33 -3.27 16 21 C -0.53 -13.39 9.34 -34.44 -0.32 -13.72 16 22 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 23 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 24 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 25 Si 0.88 20.72 24.37 -169.99 -4.14 16.58 16 26 H -0.27 -6.29 6.87 56.52 0.39 -5.90 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.26 -5.93 6.53 56.52 0.37 -5.56 16 29 H 0.10 1.20 8.00 -51.93 -0.42 0.78 16 30 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 31 H 0.08 1.20 5.41 -51.93 -0.28 0.92 16 32 H 0.14 1.82 7.89 -52.49 -0.41 1.41 16 33 H 0.14 1.57 7.88 -52.48 -0.41 1.15 16 34 H 0.15 2.02 7.32 -52.49 -0.38 1.64 16 35 H 0.42 6.81 8.45 -34.47 -0.29 6.52 16 36 H 0.05 0.91 7.74 -51.93 -0.40 0.51 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -33.31 339.48 -8.99 -42.29 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.62 Total: 4.83 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -3.76 Total: -25.41 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 2.82 Total: -51.93 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.87 Total: -37.62 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.14 Total: 16.58 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -0.52 Total: 46.13 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.31 -8.99 -42.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737223192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.907 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds