Wall clock time and date at job start Tue Mar 31 2020 19:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38047 * 119.93923 * 2 1 4 4 C 1.39279 * 119.88050 * 180.02562 * 3 2 1 5 5 C 1.48473 * 120.11715 * 180.27607 * 4 3 2 6 6 N 1.34049 * 126.67170 * 359.40800 * 5 4 3 7 7 N 1.28981 * 107.26590 * 179.89660 * 6 5 4 8 8 N 1.28733 * 108.94431 * 0.37420 * 7 6 5 9 9 H 0.97001 * 125.33962 * 179.78680 * 8 7 6 10 10 N 1.28869 * 109.31785 * 359.76363 * 8 7 6 11 11 C 1.39313 * 119.76794 * 0.02562 * 4 3 2 12 12 C 1.38009 * 119.87945 * 359.97438 * 11 4 3 13 13 C 1.38295 * 119.94572 * 180.02562 * 2 1 3 14 14 S 1.76205 * 119.87729 * 359.95654 * 13 2 1 15 15 O 1.42102 * 106.39904 * 178.54858 * 14 13 2 16 16 O 1.42096 * 106.40249 * 311.46556 * 14 13 2 17 17 N 1.65597 * 107.21904 * 65.00599 * 14 13 2 18 18 C 1.46507 * 120.00053 * 64.55092 * 17 14 13 19 19 H 1.09003 * 109.46888 * 335.94853 * 18 17 14 20 20 C 1.53001 * 109.47246 * 95.94362 * 18 17 14 21 21 C 1.50698 * 109.47210 * 215.94875 * 18 17 14 22 22 H 1.07995 * 119.99819 * 359.97438 * 21 18 17 23 23 C 1.37877 * 120.00020 * 180.02562 * 21 18 17 24 24 N 1.31507 * 120.00017 * 179.97438 * 23 21 18 25 25 Si 1.86801 * 119.99980 * 359.97438 * 23 21 18 26 26 H 1.48498 * 109.47122 * 89.99966 * 25 23 21 27 27 H 1.48502 * 109.47177 * 210.00299 * 25 23 21 28 28 H 1.48502 * 109.47081 * 330.00244 * 25 23 21 29 29 H 1.09007 * 109.47077 * 264.50225 * 1 2 3 30 30 H 1.08992 * 109.47503 * 24.49815 * 1 2 3 31 31 H 1.09003 * 109.47033 * 144.50871 * 1 2 3 32 32 H 1.07997 * 120.06270 * 0.04484 * 3 2 1 33 33 H 1.08008 * 120.06293 * 179.97438 * 11 4 3 34 34 H 1.08001 * 119.94109 * 179.97438 * 12 11 4 35 35 H 0.96992 * 120.00400 * 244.55117 * 17 14 13 36 36 H 1.08998 * 109.47338 * 300.00360 * 20 18 17 37 37 H 1.08997 * 109.46956 * 60.00011 * 20 18 17 38 38 H 1.08998 * 109.47062 * 180.02562 * 20 18 17 39 39 H 0.96999 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5887 1.1948 -0.0005 5 6 4.3351 2.4783 0.0056 6 7 3.8081 3.7109 0.0010 7 7 4.7900 4.5471 0.0114 8 7 5.8976 3.8911 0.0144 9 1 6.7836 4.2860 0.0190 10 7 5.6447 2.6275 0.0110 11 6 4.2792 -0.0152 -0.0016 12 6 3.5806 -1.2054 -0.0016 13 6 2.1973 -1.1983 -0.0005 14 16 1.3116 -2.7216 -0.0001 15 8 2.2880 -3.7534 -0.0353 16 8 0.3303 -2.6148 1.0221 17 7 0.4865 -2.8093 -1.4331 18 6 1.2215 -2.8856 -2.6982 19 1 2.2153 -2.4572 -2.5673 20 6 1.3494 -4.3489 -3.1264 21 6 0.4780 -2.1150 -3.7585 22 1 -0.4495 -1.6185 -3.5146 23 6 0.9813 -2.0447 -5.0402 24 7 0.3321 -1.3726 -5.9656 25 14 2.5853 -2.9041 -5.4622 26 1 2.3003 -4.2889 -5.9162 27 1 3.2754 -2.1598 -6.5462 28 1 3.4553 -2.9467 -4.2595 29 1 -0.3633 -0.0985 1.0230 30 1 -0.3634 0.9351 -0.4261 31 1 -0.3633 -0.8367 -0.5967 32 1 1.6560 2.1316 0.0007 33 1 5.3592 -0.0218 -0.0025 34 1 4.1148 -2.1440 -0.0029 35 1 -0.4834 -2.8102 -1.4351 36 1 1.8872 -4.9062 -2.3594 37 1 0.3557 -4.7773 -3.2572 38 1 1.8967 -4.4056 -4.0673 39 1 0.6864 -1.3228 -6.8672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737223192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:15 Heat of formation + Delta-G solvation = 56.738603 kcal Electronic energy + Delta-G solvation = -27096.708709 eV Core-core repulsion = 23168.783300 eV Total energy + Delta-G solvation = -3927.925409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.58958 -40.55088 -38.36894 -37.47764 -36.91294 -35.66258 -35.05511 -34.24547 -33.54901 -31.99522 -30.94124 -28.13963 -27.07706 -26.09696 -25.70388 -23.44219 -22.87266 -22.35283 -20.62234 -20.28266 -19.34295 -18.55097 -18.25575 -17.96757 -17.57252 -17.31275 -16.77876 -15.98389 -15.63936 -15.34169 -15.12473 -15.01603 -14.88836 -14.38991 -14.20499 -14.08017 -13.95078 -13.65495 -13.46443 -13.36721 -13.26576 -13.16398 -12.96615 -12.86743 -12.51416 -12.50766 -12.47725 -12.16691 -12.11689 -12.05884 -11.87373 -11.46030 -11.21364 -10.81126 -10.24748 -10.14978 -9.88731 -8.28250 -6.32729 -0.84044 -0.48310 0.03288 0.20473 0.99212 1.31088 1.34384 1.39856 1.47494 2.03830 2.32796 2.39758 2.48040 2.77067 2.99159 3.07514 3.40601 3.67850 3.77461 3.94365 4.08472 4.18948 4.29727 4.35644 4.43276 4.52374 4.53916 4.74099 4.77135 4.80035 4.92063 4.95134 5.14486 5.15853 5.18212 5.26043 5.49379 5.53069 5.53659 5.66633 6.27587 6.33159 6.74397 6.98987 7.32406 8.87092 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010894 B = 0.004478 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.589458 B = 6250.924898 C = 7529.323148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.020 3.980 3 C -0.106 4.106 4 C 0.031 3.969 5 C 0.200 3.800 6 N -0.285 5.285 7 N -0.052 5.052 8 N -0.195 5.195 9 H 0.497 0.503 10 N -0.282 5.282 11 C -0.109 4.109 12 C -0.029 4.029 13 C -0.674 4.674 14 S 2.706 3.294 15 O -0.981 6.981 16 O -0.977 6.977 17 N -1.092 6.092 18 C 0.250 3.750 19 H 0.042 0.958 20 C -0.174 4.174 21 C -0.518 4.518 22 H 0.059 0.941 23 C 0.026 3.974 24 N -0.938 5.938 25 Si 0.923 3.077 26 H -0.263 1.263 27 H -0.300 1.300 28 H -0.244 1.244 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.422 0.578 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 6.724 13.385 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.127 4.127 4 C 0.027 3.973 5 C -0.080 4.080 6 N -0.157 5.157 7 N -0.047 5.047 8 N -0.046 5.046 9 H 0.357 0.643 10 N -0.134 5.134 11 C -0.130 4.130 12 C -0.048 4.048 13 C -0.762 4.762 14 S 2.797 3.203 15 O -0.971 6.971 16 O -0.967 6.967 17 N -0.853 5.853 18 C 0.143 3.857 19 H 0.060 0.940 20 C -0.233 4.233 21 C -0.558 4.558 22 H 0.077 0.923 23 C -0.173 4.173 24 N -0.578 5.578 25 Si 0.750 3.250 26 H -0.188 1.188 27 H -0.227 1.227 28 H -0.167 1.167 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.258 0.742 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.219 6.843 13.879 19.113 hybrid contribution 0.816 0.319 -1.124 1.425 sum 12.036 7.162 12.755 18.943 Atomic orbital electron populations 1.21397 0.89018 1.05512 1.04911 1.19635 0.96994 0.91196 0.90348 1.21296 0.92621 0.98924 0.99867 1.17604 0.92424 0.87654 0.99569 1.23612 0.87040 0.94126 1.03178 1.76101 1.22823 0.98631 1.18180 1.78876 0.88826 1.22036 1.14929 1.47812 1.12251 1.01131 1.43452 0.64340 1.74890 1.16735 1.00793 1.21008 1.21413 1.01715 0.90048 0.99815 1.21134 0.91565 1.00274 0.91855 1.30928 1.07148 1.19944 1.18173 1.01314 0.73034 0.73765 0.72186 1.93517 1.62457 1.54375 1.86758 1.93550 1.59756 1.87555 1.55835 1.55231 1.18699 1.90318 1.21007 1.18687 0.91890 0.93298 0.81832 0.94035 1.22598 1.02211 0.98379 1.00117 1.21325 1.09125 1.31621 0.93706 0.92283 1.25580 0.99900 0.95606 0.96247 1.69989 1.40983 1.43278 1.03510 0.86253 0.81198 0.78788 0.78765 1.18838 1.22743 1.16745 0.87513 0.88196 0.91138 0.82699 0.81873 0.82044 0.74208 0.91810 0.91526 0.93901 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.60 71.24 0.61 -3.54 16 2 C 0.02 0.59 5.87 -19.90 -0.12 0.47 16 3 C -0.11 -2.95 9.33 22.48 0.21 -2.75 16 4 C 0.03 0.83 5.88 -20.04 -0.12 0.71 16 5 C 0.20 4.99 7.94 137.38 1.09 6.08 16 6 N -0.29 -7.30 12.23 -52.17 -0.64 -7.94 16 7 N -0.05 -1.05 13.47 37.02 0.50 -0.55 16 8 N -0.20 -2.73 7.90 37.02 0.29 -2.44 16 9 H 0.50 1.57 8.96 -347.54 -3.12 -1.54 16 10 N -0.28 -5.60 12.08 -52.12 -0.63 -6.23 16 11 C -0.11 -2.75 9.70 22.47 0.22 -2.54 16 12 C -0.03 -0.82 9.53 22.24 0.21 -0.61 16 13 C -0.67 -21.26 5.72 22.30 0.13 -21.13 16 14 S 2.71 91.30 4.85 -56.49 -0.27 91.03 16 15 O -0.98 -36.07 16.33 -128.00 -2.09 -38.16 16 16 O -0.98 -34.13 16.45 -128.00 -2.11 -36.23 16 17 N -1.09 -39.17 4.27 -172.51 -0.74 -39.91 16 18 C 0.25 10.60 2.36 44.24 0.10 10.71 16 19 H 0.04 1.77 6.89 -2.39 -0.02 1.76 16 20 C -0.17 -6.97 9.00 71.98 0.65 -6.33 16 21 C -0.52 -26.47 9.34 25.60 0.24 -26.23 16 22 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 23 C 0.03 1.40 5.45 84.66 0.46 1.86 16 24 N -0.94 -54.95 13.96 21.45 0.30 -54.65 16 25 Si 0.92 41.72 24.37 68.60 1.67 43.40 16 26 H -0.26 -11.32 6.87 99.48 0.68 -10.64 16 27 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.24 -10.16 6.53 99.48 0.65 -9.51 16 29 H 0.11 2.61 8.00 -2.38 -0.02 2.59 16 30 H 0.10 2.36 8.05 -2.39 -0.02 2.34 16 31 H 0.07 2.07 5.41 -2.39 -0.01 2.05 16 32 H 0.16 3.82 7.89 -2.91 -0.02 3.80 16 33 H 0.16 3.21 7.88 -2.91 -0.02 3.19 16 34 H 0.16 4.06 7.32 -2.91 -0.02 4.03 16 35 H 0.42 13.79 8.45 -96.75 -0.82 12.97 16 36 H 0.06 2.33 7.74 -2.39 -0.02 2.31 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.04 1.75 3.27 -2.39 -0.01 1.75 16 39 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -70.23 339.48 -2.89 -73.12 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -2.87 Total: 21.86 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 3.69 Total: -43.28 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -0.91 Total: -111.72 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -4.19 Total: -74.40 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.67 Total: 43.40 kcal Atomic # 16 Polarization: 91.30 SS G_CDS: -0.27 Total: 91.03 kcal Total: -70.23 -2.89 -73.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737223192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.856 kcal (2) G-P(sol) polarization free energy of solvation -70.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds