Wall clock time and date at job start Tue Mar 31 2020 19:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38336 * 119.88310 * 2 1 4 4 C 1.38008 * 120.11349 * 179.76436 * 3 2 1 5 5 C 1.39319 * 119.88485 * 0.46476 * 4 3 2 6 6 C 1.48458 * 120.12075 * 179.79068 * 5 4 3 7 7 N 1.34045 * 126.67800 * 179.71897 * 6 5 4 8 8 N 1.28980 * 107.27080 * 180.02562 * 7 6 5 9 9 N 1.28727 * 108.94374 * 359.97438 * 8 7 6 10 10 H 0.97005 * 125.34060 * 180.02562 * 9 8 7 11 11 N 1.28873 * 109.31979 * 0.02562 * 9 8 7 12 12 C 1.39280 * 119.76302 * 359.51218 * 5 4 3 13 13 C 1.38054 * 119.88062 * 0.25534 * 12 5 4 14 14 S 1.76209 * 119.93936 * 180.02562 * 13 12 5 15 15 O 1.42100 * 106.40057 * 358.18164 * 14 13 12 16 16 O 1.42098 * 106.40149 * 131.10444 * 14 13 12 17 17 N 1.65596 * 107.21687 * 244.64702 * 14 13 12 18 18 C 1.46499 * 120.00541 * 65.99528 * 17 14 13 19 19 H 1.09005 * 109.46733 * 23.00019 * 18 17 14 20 20 C 1.53005 * 109.47283 * 263.00637 * 18 17 14 21 21 C 1.50698 * 109.47486 * 143.00187 * 18 17 14 22 22 H 1.08002 * 119.99641 * 0.02562 * 21 18 17 23 23 C 1.37871 * 120.00298 * 180.02562 * 21 18 17 24 24 N 1.31516 * 119.99729 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 120.00057 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.47045 * 59.99856 * 25 23 21 27 27 H 1.48504 * 109.46860 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47045 * 299.99863 * 25 23 21 29 29 H 1.08994 * 109.47063 * 272.09316 * 1 2 3 30 30 H 1.09004 * 109.46550 * 32.09001 * 1 2 3 31 31 H 1.08998 * 109.46950 * 152.09099 * 1 2 3 32 32 H 1.07994 * 119.94490 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.05846 * 180.23473 * 4 3 2 34 34 H 1.07999 * 120.06010 * 180.27660 * 12 5 4 35 35 H 0.97002 * 119.99681 * 246.00243 * 17 14 13 36 36 H 1.09003 * 109.47206 * 54.08269 * 20 18 17 37 37 H 1.09003 * 109.46934 * 174.08384 * 20 18 17 38 38 H 1.09004 * 109.46530 * 294.08351 * 20 18 17 39 39 H 0.97003 * 119.99374 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5764 1.2050 0.0049 5 6 4.2754 -0.0001 0.0001 6 6 5.7600 -0.0002 0.0006 7 7 6.5606 -1.0753 0.0017 8 7 7.7771 -0.6469 0.0024 9 7 7.7668 0.6404 0.0013 10 1 8.5536 1.2078 0.0012 11 7 6.5473 1.0570 0.0004 12 6 3.5765 -1.2049 0.0006 13 6 2.1960 -1.1991 0.0006 14 16 1.3102 -2.7223 0.0019 15 8 2.2863 -3.7542 -0.0404 16 8 0.3337 -2.6178 1.0289 17 7 0.4783 -2.8069 -1.4275 18 6 1.2069 -2.9123 -2.6940 19 1 2.1997 -3.3224 -2.5089 20 6 1.3380 -1.5241 -3.3241 21 6 0.4549 -3.8208 -3.6321 22 1 -0.4732 -4.2740 -3.3166 23 6 0.9517 -4.0734 -4.8932 24 7 2.0817 -3.5211 -5.2776 25 14 0.0191 -5.1990 -6.0563 26 1 -1.3330 -4.6393 -6.3088 27 1 0.7578 -5.3059 -7.3401 28 1 -0.1091 -6.5461 -5.4447 29 1 -0.3633 0.0375 1.0269 30 1 -0.3632 0.8707 -0.5460 31 1 -0.3633 -0.9081 -0.4810 32 1 1.6535 2.1331 0.0004 33 1 4.1135 2.1419 0.0087 34 1 4.1135 -2.1418 0.0014 35 1 -0.4915 -2.7865 -1.4261 36 1 1.7879 -0.8397 -2.6049 37 1 1.9688 -1.5858 -4.2109 38 1 0.3505 -1.1582 -3.6054 39 1 2.4310 -3.6985 -6.1650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737299010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:19 Heat of formation + Delta-G solvation = 75.316615 kcal Electronic energy + Delta-G solvation = -27194.884507 eV Core-core repulsion = 23267.764701 eV Total energy + Delta-G solvation = -3927.119806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.54784 -39.47455 -36.76986 -35.55655 -35.30344 -34.66479 -34.00436 -32.27222 -31.87162 -31.32062 -28.37578 -27.46817 -25.23492 -24.87758 -23.64177 -23.00299 -21.47058 -20.94656 -19.45707 -18.87368 -17.59488 -17.24482 -17.22111 -16.21222 -15.74743 -15.62297 -15.04116 -14.86549 -14.42478 -14.12951 -13.95436 -13.66690 -13.53539 -12.66682 -12.55231 -12.51569 -12.38944 -12.26800 -12.00331 -11.72026 -11.55834 -11.48628 -11.45416 -11.37349 -11.23663 -11.20561 -10.95413 -10.92266 -10.66790 -10.43473 -10.32415 -10.07948 -9.35496 -9.19906 -8.62784 -8.60884 -8.28979 -6.10504 -4.17475 0.52550 0.88590 1.06061 1.14492 2.11034 2.19591 3.29642 3.34457 3.36558 3.44365 3.56223 3.74172 4.07828 4.27036 4.38462 4.62740 4.78187 4.89557 4.97675 5.16845 5.22526 5.35216 5.36382 5.47056 5.63397 5.66337 5.80874 6.01754 6.08142 6.21415 6.23268 6.27343 6.35467 6.72284 6.79083 6.82470 7.00931 7.57163 7.65522 7.86394 8.00652 8.04721 8.26347 8.84523 9.48294 10.95996 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.004159 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.152876 B = 6730.792757 C = 7891.840675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 C -0.147 4.147 4 C -0.027 4.027 5 C -0.052 4.052 6 C 0.227 3.773 7 N -0.261 5.261 8 N -0.047 5.047 9 N -0.230 5.230 10 H 0.474 0.526 11 N -0.299 5.299 12 C 0.031 3.969 13 C -0.671 4.671 14 S 2.689 3.311 15 O -0.957 6.957 16 O -0.976 6.976 17 N -1.097 6.097 18 C 0.268 3.732 19 H 0.053 0.947 20 C -0.154 4.154 21 C -0.522 4.522 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.888 5.888 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.156 0.844 35 H 0.409 0.591 36 H 0.013 0.987 37 H 0.089 0.911 38 H 0.036 0.964 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.972 13.586 10.056 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.044 3.956 3 C -0.166 4.166 4 C -0.048 4.048 5 C -0.056 4.056 6 C -0.052 4.052 7 N -0.134 5.134 8 N -0.043 5.043 9 N -0.076 5.076 10 H 0.328 0.672 11 N -0.151 5.151 12 C 0.010 3.990 13 C -0.756 4.756 14 S 2.776 3.224 15 O -0.947 6.947 16 O -0.966 6.966 17 N -0.859 5.859 18 C 0.164 3.836 19 H 0.071 0.929 20 C -0.214 4.214 21 C -0.562 4.562 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.526 5.526 25 Si 0.729 3.271 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.201 1.201 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.244 0.756 36 H 0.032 0.968 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.956 12.697 10.554 17.552 hybrid contribution -0.305 0.826 -1.145 1.444 sum 5.651 13.523 9.409 17.416 Atomic orbital electron populations 1.21307 0.89983 1.04580 1.04304 1.19697 0.96172 0.91718 0.88043 1.21024 0.93600 0.97963 1.04007 1.21323 0.94284 0.96989 0.92176 1.17187 0.84492 0.94754 1.09148 1.23591 0.96220 0.84356 1.01078 1.76186 0.94548 1.25364 1.17302 1.78942 1.17019 0.93762 1.14559 1.47704 1.07581 1.05960 1.46353 0.67178 1.74871 0.90737 1.26741 1.22712 1.20973 0.92004 0.98560 0.87501 1.31116 1.05652 1.21039 1.17746 1.02026 0.73628 0.73693 0.73054 1.93577 1.62036 1.52530 1.86512 1.93546 1.59659 1.87321 1.56096 1.55585 1.17836 1.89680 1.22812 1.18643 0.92554 0.93769 0.78617 0.92931 1.22259 1.00818 0.96616 1.01704 1.21168 1.08553 1.28328 0.98154 0.91726 1.24903 0.95019 0.95951 0.97918 1.69874 1.19400 1.43341 1.19957 0.86514 0.79646 0.81177 0.79801 1.20221 1.21246 1.20067 0.88605 0.89794 0.90556 0.84484 0.84513 0.82664 0.75646 0.96841 0.89251 0.94511 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.80 36.01 0.32 -1.45 16 2 C 0.05 0.64 5.40 -104.56 -0.56 0.08 16 3 C -0.15 -1.73 9.69 -39.63 -0.38 -2.11 16 4 C -0.03 -0.33 9.70 -39.26 -0.38 -0.71 16 5 C -0.05 -0.76 5.88 -104.90 -0.62 -1.38 16 6 C 0.23 3.29 7.94 -156.31 -1.24 2.05 16 7 N -0.26 -4.08 12.23 32.15 0.39 -3.69 16 8 N -0.05 -0.60 13.47 60.35 0.81 0.21 16 9 N -0.23 -2.13 7.90 60.35 0.48 -1.66 16 10 H 0.47 1.84 8.96 -340.37 -3.05 -1.21 16 11 N -0.30 -3.51 12.08 32.17 0.39 -3.12 16 12 C 0.03 0.52 9.20 -39.26 -0.36 0.15 16 13 C -0.67 -11.16 4.97 -39.63 -0.20 -11.35 16 14 S 2.69 50.72 4.91 -107.50 -0.53 50.19 16 15 O -0.96 -21.25 16.26 -57.17 -0.93 -22.18 16 16 O -0.98 -18.47 16.44 -57.17 -0.94 -19.41 16 17 N -1.10 -21.39 4.35 -5.88 -0.03 -21.42 16 18 C 0.27 6.32 2.91 -69.08 -0.20 6.12 16 19 H 0.05 1.38 7.46 -51.93 -0.39 1.00 16 20 C -0.15 -3.41 9.20 37.16 0.34 -3.07 16 21 C -0.52 -13.56 8.77 -34.44 -0.30 -13.86 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 24 N -0.89 -24.36 11.39 55.43 0.63 -23.72 16 25 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.08 1.02 4.88 -51.93 -0.25 0.76 16 32 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.32 7.88 -52.49 -0.41 0.90 16 34 H 0.16 2.72 7.16 -52.49 -0.38 2.34 16 35 H 0.41 7.04 8.37 -34.46 -0.29 6.75 16 36 H 0.01 0.25 6.67 -51.93 -0.35 -0.10 16 37 H 0.09 2.21 6.25 -51.93 -0.32 1.89 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 343.84 15.07 5.18 5.18 Total: -1.00 -33.59 343.84 -9.92 -43.51 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.67 Total: 4.42 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -3.68 Total: -23.90 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 2.68 Total: -53.40 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.87 Total: -41.58 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 50.72 SS G_CDS: -0.53 Total: 50.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.59 -9.92 -43.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737299010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.828 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds