Wall clock time and date at job start Tue Mar 31 2020 19:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38336 * 119.88310 * 2 1 4 4 C 1.38008 * 120.11349 * 179.76436 * 3 2 1 5 5 C 1.39319 * 119.88485 * 0.46476 * 4 3 2 6 6 C 1.48458 * 120.12075 * 179.79068 * 5 4 3 7 7 N 1.34045 * 126.67800 * 179.71897 * 6 5 4 8 8 N 1.28980 * 107.27080 * 180.02562 * 7 6 5 9 9 N 1.28727 * 108.94374 * 359.97438 * 8 7 6 10 10 H 0.97005 * 125.34060 * 180.02562 * 9 8 7 11 11 N 1.28873 * 109.31979 * 0.02562 * 9 8 7 12 12 C 1.39280 * 119.76302 * 359.51218 * 5 4 3 13 13 C 1.38054 * 119.88062 * 0.25534 * 12 5 4 14 14 S 1.76209 * 119.93936 * 180.02562 * 13 12 5 15 15 O 1.42100 * 106.40057 * 358.18164 * 14 13 12 16 16 O 1.42098 * 106.40149 * 131.10444 * 14 13 12 17 17 N 1.65596 * 107.21687 * 244.64702 * 14 13 12 18 18 C 1.46499 * 120.00541 * 65.99528 * 17 14 13 19 19 H 1.09005 * 109.46733 * 23.00019 * 18 17 14 20 20 C 1.53005 * 109.47283 * 263.00637 * 18 17 14 21 21 C 1.50698 * 109.47486 * 143.00187 * 18 17 14 22 22 H 1.08002 * 119.99641 * 0.02562 * 21 18 17 23 23 C 1.37871 * 120.00298 * 180.02562 * 21 18 17 24 24 N 1.31516 * 119.99729 * 359.97438 * 23 21 18 25 25 Si 1.86802 * 120.00057 * 180.02562 * 23 21 18 26 26 H 1.48503 * 109.47045 * 59.99856 * 25 23 21 27 27 H 1.48504 * 109.46860 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47045 * 299.99863 * 25 23 21 29 29 H 1.08994 * 109.47063 * 272.09316 * 1 2 3 30 30 H 1.09004 * 109.46550 * 32.09001 * 1 2 3 31 31 H 1.08998 * 109.46950 * 152.09099 * 1 2 3 32 32 H 1.07994 * 119.94490 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.05846 * 180.23473 * 4 3 2 34 34 H 1.07999 * 120.06010 * 180.27660 * 12 5 4 35 35 H 0.97002 * 119.99681 * 246.00243 * 17 14 13 36 36 H 1.09003 * 109.47206 * 54.08269 * 20 18 17 37 37 H 1.09003 * 109.46934 * 174.08384 * 20 18 17 38 38 H 1.09004 * 109.46530 * 294.08351 * 20 18 17 39 39 H 0.97003 * 119.99374 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1963 1.1994 0.0000 4 6 3.5764 1.2050 0.0049 5 6 4.2754 -0.0001 0.0001 6 6 5.7600 -0.0002 0.0006 7 7 6.5606 -1.0753 0.0017 8 7 7.7771 -0.6469 0.0024 9 7 7.7668 0.6404 0.0013 10 1 8.5536 1.2078 0.0012 11 7 6.5473 1.0570 0.0004 12 6 3.5765 -1.2049 0.0006 13 6 2.1960 -1.1991 0.0006 14 16 1.3102 -2.7223 0.0019 15 8 2.2863 -3.7542 -0.0404 16 8 0.3337 -2.6178 1.0289 17 7 0.4783 -2.8069 -1.4275 18 6 1.2069 -2.9123 -2.6940 19 1 2.1997 -3.3224 -2.5089 20 6 1.3380 -1.5241 -3.3241 21 6 0.4549 -3.8208 -3.6321 22 1 -0.4732 -4.2740 -3.3166 23 6 0.9517 -4.0734 -4.8932 24 7 2.0817 -3.5211 -5.2776 25 14 0.0191 -5.1990 -6.0563 26 1 -1.3330 -4.6393 -6.3088 27 1 0.7578 -5.3059 -7.3401 28 1 -0.1091 -6.5461 -5.4447 29 1 -0.3633 0.0375 1.0269 30 1 -0.3632 0.8707 -0.5460 31 1 -0.3633 -0.9081 -0.4810 32 1 1.6535 2.1331 0.0004 33 1 4.1135 2.1419 0.0087 34 1 4.1135 -2.1418 0.0014 35 1 -0.4915 -2.7865 -1.4261 36 1 1.7879 -0.8397 -2.6049 37 1 1.9688 -1.5858 -4.2109 38 1 0.3505 -1.1582 -3.6054 39 1 2.4310 -3.6985 -6.1650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737299010.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:18 Heat of formation + Delta-G solvation = 49.573815 kcal Electronic energy + Delta-G solvation = -27196.000798 eV Core-core repulsion = 23267.764701 eV Total energy + Delta-G solvation = -3928.236098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.53015 -40.54522 -38.34376 -37.31790 -36.90433 -35.69894 -35.03529 -34.12456 -32.94825 -32.40955 -30.14675 -28.47859 -27.20791 -25.88951 -24.66170 -24.11734 -22.79841 -22.53073 -20.56512 -20.21729 -19.15972 -18.65463 -18.20755 -17.82292 -17.26147 -16.79810 -16.68775 -16.05962 -15.89737 -15.32203 -15.17777 -14.99296 -14.60563 -14.48833 -14.03973 -13.59236 -13.50995 -13.44421 -13.36916 -13.28203 -13.16444 -13.00541 -12.84833 -12.76407 -12.53971 -12.47353 -12.44254 -12.28639 -12.18652 -11.97722 -11.92047 -11.70022 -11.09427 -10.57200 -10.43367 -10.05494 -9.66461 -8.11569 -6.25259 -0.58000 -0.44771 -0.12548 0.11473 1.13604 1.37357 1.47291 1.49398 1.56241 2.11357 2.44336 2.48477 2.54631 2.80445 3.08362 3.18913 3.48011 3.69377 3.76608 3.92821 4.14877 4.23296 4.37671 4.46740 4.55194 4.59018 4.77616 4.80839 4.92292 4.96789 5.07570 5.14559 5.17662 5.21765 5.27073 5.58298 5.61752 5.71514 5.79122 6.06209 6.15269 6.44436 6.85108 7.04925 7.44073 8.93923 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.004159 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.152876 B = 6730.792757 C = 7891.840675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.039 3.961 3 C -0.132 4.132 4 C -0.015 4.015 5 C -0.060 4.060 6 C 0.210 3.790 7 N -0.305 5.305 8 N -0.056 5.056 9 N -0.195 5.195 10 H 0.496 0.504 11 N -0.283 5.283 12 C 0.006 3.994 13 C -0.683 4.683 14 S 2.699 3.301 15 O -1.002 7.002 16 O -0.979 6.979 17 N -1.094 6.094 18 C 0.274 3.726 19 H 0.015 0.985 20 C -0.139 4.139 21 C -0.541 4.541 22 H 0.068 0.932 23 C 0.018 3.982 24 N -0.915 5.915 25 Si 0.961 3.039 26 H -0.264 1.264 27 H -0.286 1.286 28 H -0.276 1.276 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.184 0.816 33 H 0.170 0.830 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 16.772 10.186 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.037 3.963 3 C -0.151 4.151 4 C -0.035 4.035 5 C -0.064 4.064 6 C -0.070 4.070 7 N -0.177 5.177 8 N -0.050 5.050 9 N -0.047 5.047 10 H 0.356 0.644 11 N -0.135 5.135 12 C -0.016 4.016 13 C -0.772 4.772 14 S 2.791 3.209 15 O -0.992 6.992 16 O -0.969 6.969 17 N -0.856 5.856 18 C 0.169 3.831 19 H 0.032 0.968 20 C -0.199 4.199 21 C -0.581 4.581 22 H 0.086 0.914 23 C -0.183 4.183 24 N -0.554 5.554 25 Si 0.786 3.214 26 H -0.189 1.189 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.202 0.798 33 H 0.187 0.813 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.164 15.841 10.696 19.800 hybrid contribution 0.055 -0.023 -1.092 1.094 sum 5.219 15.819 9.604 19.228 Atomic orbital electron populations 1.21461 0.88597 1.05330 1.05442 1.20062 0.97310 0.91480 0.87491 1.21531 0.93462 0.98684 1.01381 1.21744 0.94742 0.97016 0.90029 1.17338 0.84884 0.94962 1.09243 1.23651 0.96470 0.84675 1.02164 1.76178 0.95598 1.26873 1.19015 1.78877 1.16130 0.94909 1.15130 1.47787 1.07935 1.05468 1.43482 0.64398 1.74815 0.91064 1.25627 1.22042 1.20840 0.92277 0.98797 0.89711 1.30549 1.05394 1.20415 1.20844 1.01328 0.73019 0.74022 0.72538 1.93517 1.63161 1.55641 1.86927 1.93528 1.59895 1.87727 1.55770 1.55302 1.18330 1.90291 1.21661 1.18304 0.90882 0.94210 0.79725 0.96765 1.22030 1.00870 0.96120 1.00851 1.21577 1.08860 1.28809 0.98822 0.91393 1.25678 0.95796 0.97284 0.99512 1.70013 1.20653 1.44493 1.20232 0.85568 0.78910 0.79181 0.77708 1.18891 1.21115 1.20190 0.87425 0.86423 0.92206 0.79848 0.81251 0.85200 0.74446 0.94540 0.92058 0.93520 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.80 71.24 0.63 -2.62 16 2 C 0.04 0.99 5.40 -19.83 -0.11 0.89 16 3 C -0.13 -2.53 9.69 22.24 0.22 -2.32 16 4 C -0.02 -0.32 9.70 22.48 0.22 -0.10 16 5 C -0.06 -1.72 5.88 -20.04 -0.12 -1.84 16 6 C 0.21 5.97 7.94 137.38 1.09 7.06 16 7 N -0.30 -9.75 12.23 -52.18 -0.64 -10.39 16 8 N -0.06 -1.39 13.47 37.02 0.50 -0.89 16 9 N -0.20 -3.25 7.90 37.02 0.29 -2.95 16 10 H 0.50 2.56 8.96 -347.54 -3.12 -0.56 16 11 N -0.28 -6.03 12.08 -52.13 -0.63 -6.66 16 12 C 0.01 0.19 9.20 22.48 0.21 0.40 16 13 C -0.68 -22.82 4.97 22.24 0.11 -22.71 16 14 S 2.70 105.49 4.91 -56.49 -0.28 105.22 16 15 O -1.00 -47.74 16.26 -128.00 -2.08 -49.82 16 16 O -0.98 -37.42 16.44 -128.00 -2.10 -39.52 16 17 N -1.09 -43.59 4.35 -172.51 -0.75 -44.34 16 18 C 0.27 13.32 2.91 44.25 0.13 13.45 16 19 H 0.01 0.81 7.46 -2.38 -0.02 0.79 16 20 C -0.14 -6.18 9.20 71.98 0.66 -5.51 16 21 C -0.54 -28.56 8.77 25.60 0.22 -28.34 16 22 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 23 C 0.02 0.94 5.30 84.65 0.45 1.39 16 24 N -0.92 -51.39 11.39 21.45 0.24 -51.14 16 25 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 26 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.12 1.70 8.10 -2.38 -0.02 1.68 16 31 H 0.06 1.49 4.88 -2.39 -0.01 1.48 16 32 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.17 2.42 7.88 -2.91 -0.02 2.40 16 34 H 0.13 5.04 7.16 -2.91 -0.02 5.02 16 35 H 0.42 14.54 8.37 -96.75 -0.81 13.73 16 36 H 0.04 1.40 6.67 -2.39 -0.02 1.38 16 37 H 0.06 3.09 6.25 -2.39 -0.01 3.07 16 38 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -75.82 343.84 -2.50 -78.32 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -2.78 Total: 17.99 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 3.71 Total: -40.27 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -0.98 Total: -116.38 kcal Atomic # 8 Polarization: -85.16 SS G_CDS: -4.19 Total: -89.34 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 105.49 SS G_CDS: -0.28 Total: 105.22 kcal Total: -75.82 -2.50 -78.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737299010.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.889 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds