Wall clock time and date at job start Tue Mar 31 2020 19:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 119.88232 * 2 1 4 4 C 1.38013 * 120.11553 * 180.27764 * 3 2 1 5 5 C 1.39319 * 119.87952 * 359.74527 * 4 3 2 6 6 C 1.48462 * 120.11476 * 180.02562 * 5 4 3 7 7 N 1.34046 * 126.67537 * 179.66676 * 6 5 4 8 8 N 1.28983 * 107.27219 * 179.83182 * 7 6 5 9 9 N 1.28733 * 108.94191 * 0.42898 * 8 7 6 10 10 H 0.96997 * 125.34454 * 179.74476 * 9 8 7 11 11 N 1.28870 * 109.31414 * 359.72785 * 9 8 7 12 12 C 1.39274 * 119.76686 * 0.02562 * 5 4 3 13 13 C 1.38044 * 119.88234 * 359.97438 * 12 5 4 14 14 S 1.76207 * 119.94293 * 179.97438 * 13 12 5 15 15 O 1.42090 * 106.40497 * 131.28560 * 14 13 12 16 16 O 1.42100 * 106.39858 * 358.36558 * 14 13 12 17 17 N 1.65602 * 107.21504 * 244.82705 * 14 13 12 18 18 C 1.46502 * 119.99753 * 64.60434 * 17 14 13 19 19 H 1.08997 * 109.47469 * 335.61489 * 18 17 14 20 20 C 1.53000 * 109.47431 * 95.62404 * 18 17 14 21 21 C 1.50704 * 109.46519 * 215.62109 * 18 17 14 22 22 H 1.07992 * 120.00294 * 359.97438 * 21 18 17 23 23 C 1.37881 * 119.99850 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99970 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 119.99937 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46856 * 60.00797 * 25 23 21 27 27 H 1.48504 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48491 * 109.47603 * 300.00201 * 25 23 21 29 29 H 1.08992 * 109.47157 * 264.62546 * 1 2 3 30 30 H 1.08999 * 109.46965 * 24.62848 * 1 2 3 31 31 H 1.08998 * 109.47352 * 144.62146 * 1 2 3 32 32 H 1.07994 * 119.94533 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.05674 * 179.76638 * 4 3 2 34 34 H 1.08004 * 120.05678 * 179.97438 * 12 5 4 35 35 H 0.96993 * 120.00102 * 244.86826 * 17 14 13 36 36 H 1.09000 * 109.47048 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.46731 * 299.99462 * 20 18 17 38 38 H 1.09001 * 109.47025 * 59.99898 * 20 18 17 39 39 H 0.97001 * 120.00407 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1994 0.0000 4 6 3.5763 1.2050 -0.0058 5 6 4.2753 -0.0001 -0.0063 6 6 5.7599 -0.0002 -0.0119 7 7 6.5605 -1.0753 -0.0067 8 7 7.7771 -0.6468 -0.0182 9 7 7.7668 0.6404 -0.0211 10 1 8.5534 1.2079 -0.0257 11 7 6.5472 1.0569 -0.0173 12 6 3.5764 -1.2048 -0.0014 13 6 2.1960 -1.1991 0.0043 14 16 1.3102 -2.7223 0.0098 15 8 0.3353 -2.6159 1.0380 16 8 2.2862 -3.7542 -0.0320 17 7 0.4762 -2.8094 -1.4183 18 6 1.2034 -2.8863 -2.6877 19 1 2.1962 -2.4535 -2.5646 20 6 1.3343 -4.3503 -3.1126 21 6 0.4498 -2.1217 -3.7454 22 1 -0.4781 -1.6283 -3.4969 23 6 0.9451 -2.0522 -5.0303 24 7 2.0749 -2.6535 -5.3329 25 14 0.0107 -1.1051 -6.3414 26 1 -0.1174 0.3157 -5.9290 27 1 0.7478 -1.1830 -7.6283 28 1 -1.3414 -1.6955 -6.5097 29 1 -0.3633 -0.0962 1.0231 30 1 -0.3633 0.9342 -0.4283 31 1 -0.3634 -0.8379 -0.5950 32 1 1.6534 2.1330 -0.0004 33 1 4.1134 2.1420 -0.0096 34 1 4.1135 -2.1418 -0.0022 35 1 -0.4937 -2.8055 -1.4145 36 1 1.8750 -4.4075 -4.0573 37 1 1.8794 -4.9033 -2.3476 38 1 0.3415 -4.7830 -3.2358 39 1 2.4232 -2.6050 -6.2370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737299012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:24 Heat of formation + Delta-G solvation = 73.766617 kcal Electronic energy + Delta-G solvation = -27232.551647 eV Core-core repulsion = 23305.364628 eV Total energy + Delta-G solvation = -3927.187019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.50893 -39.38517 -36.76509 -35.52024 -35.30432 -34.62869 -33.96064 -32.27700 -31.84170 -31.25601 -28.31653 -27.40067 -25.21020 -24.84209 -23.58635 -22.94384 -21.43824 -20.93449 -19.42063 -18.86351 -17.58405 -17.19846 -17.12181 -16.28509 -15.63069 -15.62609 -15.05991 -14.82020 -14.43038 -14.09580 -13.89803 -13.60501 -13.46526 -12.62686 -12.50015 -12.44506 -12.35116 -12.15219 -12.07308 -11.65973 -11.58852 -11.44493 -11.41509 -11.35500 -11.19825 -11.15463 -10.98204 -10.88123 -10.60891 -10.44836 -10.25698 -10.11517 -9.28133 -9.20169 -8.62457 -8.54539 -8.30729 -6.13186 -4.22015 0.59126 0.92456 1.09881 1.19857 2.14661 2.25222 3.24081 3.30037 3.30690 3.49134 3.61073 3.74725 4.12028 4.28647 4.33512 4.70484 4.85904 4.95397 5.01268 5.18415 5.23479 5.40268 5.43291 5.54314 5.70324 5.76608 5.87840 6.07266 6.17424 6.27473 6.28028 6.32477 6.38649 6.79805 6.84302 7.08551 7.11502 7.58110 7.70045 7.80501 8.04393 8.08343 8.26654 8.80568 9.44279 10.92259 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.004636 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.621782 B = 6037.643204 C = 6958.261540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 C -0.147 4.147 4 C -0.026 4.026 5 C -0.054 4.054 6 C 0.229 3.771 7 N -0.262 5.262 8 N -0.048 5.048 9 N -0.231 5.231 10 H 0.474 0.526 11 N -0.299 5.299 12 C 0.031 3.969 13 C -0.672 4.672 14 S 2.690 3.310 15 O -0.977 6.977 16 O -0.960 6.960 17 N -1.099 6.099 18 C 0.275 3.725 19 H 0.042 0.958 20 C -0.158 4.158 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.885 5.885 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.155 0.845 35 H 0.409 0.591 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.925 9.717 10.285 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.048 3.952 3 C -0.166 4.166 4 C -0.047 4.047 5 C -0.058 4.058 6 C -0.051 4.051 7 N -0.135 5.135 8 N -0.044 5.044 9 N -0.076 5.076 10 H 0.328 0.672 11 N -0.151 5.151 12 C 0.010 3.990 13 C -0.756 4.756 14 S 2.778 3.222 15 O -0.967 6.967 16 O -0.950 6.950 17 N -0.860 5.860 18 C 0.171 3.829 19 H 0.059 0.941 20 C -0.218 4.218 21 C -0.566 4.566 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.522 5.522 25 Si 0.726 3.274 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.173 0.827 35 H 0.244 0.756 36 H 0.110 0.890 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.908 8.785 10.783 15.112 hybrid contribution -0.315 1.912 -1.284 2.324 sum 5.593 10.697 9.499 15.360 Atomic orbital electron populations 1.21347 0.89979 1.04958 1.04326 1.19698 0.96242 0.91697 0.87518 1.21044 0.93602 0.97997 1.03924 1.21324 0.94305 0.96978 0.92058 1.17175 0.84457 0.94785 1.09369 1.23594 0.96228 0.84331 1.00943 1.76170 0.94545 1.25388 1.17385 1.78929 1.17037 0.93792 1.14620 1.47695 1.07587 1.05946 1.46395 0.67200 1.74873 0.90717 1.26745 1.22727 1.20950 0.92004 0.98500 0.87590 1.31011 1.05578 1.20930 1.18129 1.01982 0.73557 0.73741 0.72963 1.93539 1.59801 1.87326 1.56056 1.93568 1.62084 1.52704 1.86595 1.55629 1.17923 1.89865 1.22633 1.18538 0.91526 0.94125 0.78672 0.94055 1.22229 1.00006 0.96941 1.02580 1.21224 1.08555 1.32842 0.93937 0.91778 1.24910 0.94996 0.95464 0.98394 1.69874 1.19406 1.42546 1.20410 0.86563 0.79881 0.80271 0.80698 1.20261 1.21256 1.20116 0.88549 0.89881 0.89948 0.84470 0.84529 0.82733 0.75642 0.89017 0.95498 0.94870 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.60 36.01 0.31 -1.69 16 2 C 0.05 0.77 5.88 -104.57 -0.61 0.15 16 3 C -0.15 -1.90 9.66 -39.63 -0.38 -2.29 16 4 C -0.03 -0.35 9.70 -39.26 -0.38 -0.73 16 5 C -0.05 -0.84 5.88 -104.90 -0.62 -1.45 16 6 C 0.23 3.46 7.94 -156.31 -1.24 2.22 16 7 N -0.26 -4.20 12.23 32.15 0.39 -3.80 16 8 N -0.05 -0.63 13.47 60.35 0.81 0.18 16 9 N -0.23 -2.24 7.90 60.35 0.48 -1.76 16 10 H 0.47 2.03 8.96 -340.37 -3.05 -1.02 16 11 N -0.30 -3.69 12.08 32.17 0.39 -3.30 16 12 C 0.03 0.54 9.20 -39.27 -0.36 0.18 16 13 C -0.67 -11.69 5.71 -39.63 -0.23 -11.92 16 14 S 2.69 50.57 4.85 -107.50 -0.52 50.05 16 15 O -0.98 -18.44 16.49 -57.18 -0.94 -19.39 16 16 O -0.96 -20.59 16.30 -57.18 -0.93 -21.52 16 17 N -1.10 -21.34 4.25 -5.88 -0.02 -21.37 16 18 C 0.28 6.47 2.76 -69.08 -0.19 6.28 16 19 H 0.04 1.05 7.83 -51.93 -0.41 0.64 16 20 C -0.16 -3.77 9.29 37.16 0.35 -3.43 16 21 C -0.53 -13.13 8.76 -34.44 -0.30 -13.43 16 22 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 23 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 24 N -0.88 -24.01 11.32 55.43 0.63 -23.38 16 25 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.10 1.18 8.01 -51.93 -0.42 0.76 16 30 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 31 H 0.08 1.19 5.38 -51.93 -0.28 0.91 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.14 1.45 7.88 -52.49 -0.41 1.03 16 34 H 0.16 2.75 7.16 -52.48 -0.38 2.38 16 35 H 0.41 7.02 8.42 -34.47 -0.29 6.73 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.03 0.61 7.71 -51.93 -0.40 0.21 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -32.89 346.23 -10.04 -42.92 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.76 Total: 5.62 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -3.75 Total: -24.50 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 2.67 Total: -53.44 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.87 Total: -40.91 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 50.57 SS G_CDS: -0.52 Total: 50.05 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.89 -10.04 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737299012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.690 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds