Wall clock time and date at job start Tue Mar 31 2020 19:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38330 * 119.88232 * 2 1 4 4 C 1.38013 * 120.11553 * 180.27764 * 3 2 1 5 5 C 1.39319 * 119.87952 * 359.74527 * 4 3 2 6 6 C 1.48462 * 120.11476 * 180.02562 * 5 4 3 7 7 N 1.34046 * 126.67537 * 179.66676 * 6 5 4 8 8 N 1.28983 * 107.27219 * 179.83182 * 7 6 5 9 9 N 1.28733 * 108.94191 * 0.42898 * 8 7 6 10 10 H 0.96997 * 125.34454 * 179.74476 * 9 8 7 11 11 N 1.28870 * 109.31414 * 359.72785 * 9 8 7 12 12 C 1.39274 * 119.76686 * 0.02562 * 5 4 3 13 13 C 1.38044 * 119.88234 * 359.97438 * 12 5 4 14 14 S 1.76207 * 119.94293 * 179.97438 * 13 12 5 15 15 O 1.42090 * 106.40497 * 131.28560 * 14 13 12 16 16 O 1.42100 * 106.39858 * 358.36558 * 14 13 12 17 17 N 1.65602 * 107.21504 * 244.82705 * 14 13 12 18 18 C 1.46502 * 119.99753 * 64.60434 * 17 14 13 19 19 H 1.08997 * 109.47469 * 335.61489 * 18 17 14 20 20 C 1.53000 * 109.47431 * 95.62404 * 18 17 14 21 21 C 1.50704 * 109.46519 * 215.62109 * 18 17 14 22 22 H 1.07992 * 120.00294 * 359.97438 * 21 18 17 23 23 C 1.37881 * 119.99850 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99970 * 0.02562 * 23 21 18 25 25 Si 1.86798 * 119.99937 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46856 * 60.00797 * 25 23 21 27 27 H 1.48504 * 109.47150 * 180.02562 * 25 23 21 28 28 H 1.48491 * 109.47603 * 300.00201 * 25 23 21 29 29 H 1.08992 * 109.47157 * 264.62546 * 1 2 3 30 30 H 1.08999 * 109.46965 * 24.62848 * 1 2 3 31 31 H 1.08998 * 109.47352 * 144.62146 * 1 2 3 32 32 H 1.07994 * 119.94533 * 359.97438 * 3 2 1 33 33 H 1.07999 * 120.05674 * 179.76638 * 4 3 2 34 34 H 1.08004 * 120.05678 * 179.97438 * 12 5 4 35 35 H 0.96993 * 120.00102 * 244.86826 * 17 14 13 36 36 H 1.09000 * 109.47048 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.46731 * 299.99462 * 20 18 17 38 38 H 1.09001 * 109.47025 * 59.99898 * 20 18 17 39 39 H 0.97001 * 120.00407 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1994 0.0000 4 6 3.5763 1.2050 -0.0058 5 6 4.2753 -0.0001 -0.0063 6 6 5.7599 -0.0002 -0.0119 7 7 6.5605 -1.0753 -0.0067 8 7 7.7771 -0.6468 -0.0182 9 7 7.7668 0.6404 -0.0211 10 1 8.5534 1.2079 -0.0257 11 7 6.5472 1.0569 -0.0173 12 6 3.5764 -1.2048 -0.0014 13 6 2.1960 -1.1991 0.0043 14 16 1.3102 -2.7223 0.0098 15 8 0.3353 -2.6159 1.0380 16 8 2.2862 -3.7542 -0.0320 17 7 0.4762 -2.8094 -1.4183 18 6 1.2034 -2.8863 -2.6877 19 1 2.1962 -2.4535 -2.5646 20 6 1.3343 -4.3503 -3.1126 21 6 0.4498 -2.1217 -3.7454 22 1 -0.4781 -1.6283 -3.4969 23 6 0.9451 -2.0522 -5.0303 24 7 2.0749 -2.6535 -5.3329 25 14 0.0107 -1.1051 -6.3414 26 1 -0.1174 0.3157 -5.9290 27 1 0.7478 -1.1830 -7.6283 28 1 -1.3414 -1.6955 -6.5097 29 1 -0.3633 -0.0962 1.0231 30 1 -0.3633 0.9342 -0.4283 31 1 -0.3634 -0.8379 -0.5950 32 1 1.6534 2.1330 -0.0004 33 1 4.1134 2.1420 -0.0096 34 1 4.1135 -2.1418 -0.0022 35 1 -0.4937 -2.8055 -1.4145 36 1 1.8750 -4.4075 -4.0573 37 1 1.8794 -4.9033 -2.3476 38 1 0.3415 -4.7830 -3.2358 39 1 2.4232 -2.6050 -6.2370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737299012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:22 Heat of formation + Delta-G solvation = 49.179458 kcal Electronic energy + Delta-G solvation = -27233.617826 eV Core-core repulsion = 23305.364628 eV Total energy + Delta-G solvation = -3928.253198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.53531 -40.51688 -38.33086 -37.29514 -36.88972 -35.70420 -35.03656 -34.10810 -32.95726 -32.40655 -30.13682 -28.48111 -27.19202 -25.89207 -24.66426 -24.10300 -22.86790 -22.50867 -20.56838 -20.21225 -19.15746 -18.52602 -18.21293 -17.91882 -17.22397 -16.77872 -16.69591 -16.07157 -15.89372 -15.35189 -15.18370 -14.89861 -14.60926 -14.48444 -14.03486 -13.63938 -13.48200 -13.45427 -13.37563 -13.25960 -13.18946 -12.97131 -12.84862 -12.75418 -12.53862 -12.46988 -12.38560 -12.29799 -12.19237 -11.97854 -11.92654 -11.72531 -11.08196 -10.55334 -10.41697 -10.07641 -9.66599 -8.08680 -6.23524 -0.56835 -0.43786 -0.11903 0.11133 1.13146 1.36788 1.49467 1.50890 1.57778 2.10493 2.42753 2.50402 2.54443 2.80822 3.07584 3.21562 3.49086 3.70284 3.76095 3.92156 4.14408 4.24577 4.37639 4.47107 4.53935 4.58548 4.77718 4.80316 4.90069 4.97552 5.13580 5.16338 5.18866 5.20247 5.27502 5.57967 5.62649 5.71610 5.76534 6.06198 6.12040 6.45579 6.87816 7.04134 7.46372 8.96614 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.004636 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.621782 B = 6037.643204 C = 6958.261540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.038 3.962 3 C -0.136 4.136 4 C -0.018 4.018 5 C -0.063 4.063 6 C 0.211 3.789 7 N -0.303 5.303 8 N -0.055 5.055 9 N -0.195 5.195 10 H 0.496 0.504 11 N -0.284 5.284 12 C 0.005 3.995 13 C -0.688 4.688 14 S 2.702 3.298 15 O -0.979 6.979 16 O -0.995 6.995 17 N -1.094 6.094 18 C 0.282 3.718 19 H 0.017 0.983 20 C -0.154 4.154 21 C -0.531 4.531 22 H 0.077 0.923 23 C 0.016 3.984 24 N -0.918 5.918 25 Si 0.961 3.039 26 H -0.267 1.267 27 H -0.292 1.292 28 H -0.269 1.269 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.182 0.818 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.420 0.580 36 H 0.069 0.931 37 H 0.025 0.975 38 H 0.041 0.959 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 13.065 10.434 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.036 3.964 3 C -0.155 4.155 4 C -0.037 4.037 5 C -0.067 4.067 6 C -0.069 4.069 7 N -0.175 5.175 8 N -0.049 5.049 9 N -0.047 5.047 10 H 0.356 0.644 11 N -0.137 5.137 12 C -0.016 4.016 13 C -0.776 4.776 14 S 2.793 3.207 15 O -0.969 6.969 16 O -0.986 6.986 17 N -0.856 5.856 18 C 0.177 3.823 19 H 0.035 0.965 20 C -0.213 4.213 21 C -0.571 4.571 22 H 0.095 0.905 23 C -0.184 4.184 24 N -0.557 5.557 25 Si 0.787 3.213 26 H -0.192 1.192 27 H -0.218 1.218 28 H -0.194 1.194 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.152 0.848 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.084 12.101 10.952 17.095 hybrid contribution 0.055 0.970 -1.253 1.586 sum 5.139 13.071 9.699 17.068 Atomic orbital electron populations 1.21479 0.88659 1.06013 1.04994 1.20082 0.97404 0.91649 0.87265 1.21545 0.93597 0.98729 1.01579 1.21738 0.94709 0.97128 0.90170 1.17350 0.84996 0.95011 1.09336 1.23620 0.96395 0.84741 1.02160 1.76161 0.95554 1.26769 1.19006 1.78864 1.16102 0.94886 1.15091 1.47775 1.07894 1.05480 1.43525 0.64388 1.74814 0.91108 1.25677 1.22063 1.20870 0.92287 0.98834 0.89659 1.30626 1.05498 1.20722 1.20714 1.01320 0.73001 0.73865 0.72467 1.93523 1.59995 1.87644 1.55728 1.93519 1.62960 1.55168 1.86920 1.55357 1.18437 1.90336 1.21484 1.18210 0.90793 0.93327 0.79994 0.96546 1.22153 1.00106 0.97666 1.01415 1.21561 1.08839 1.32476 0.94179 0.90490 1.25707 0.95713 0.96390 1.00563 1.70026 1.20997 1.44046 1.20650 0.85565 0.78635 0.79361 0.77783 1.19206 1.21814 1.19381 0.87523 0.86774 0.91445 0.80097 0.81327 0.84809 0.74418 0.91217 0.95606 0.93950 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.60 71.24 0.61 -3.14 16 2 C 0.04 1.09 5.88 -19.83 -0.12 0.98 16 3 C -0.14 -3.05 9.66 22.24 0.21 -2.84 16 4 C -0.02 -0.42 9.70 22.48 0.22 -0.20 16 5 C -0.06 -1.93 5.88 -20.04 -0.12 -2.05 16 6 C 0.21 6.28 7.94 137.38 1.09 7.37 16 7 N -0.30 -9.90 12.23 -52.18 -0.64 -10.54 16 8 N -0.05 -1.40 13.47 37.02 0.50 -0.90 16 9 N -0.20 -3.42 7.90 37.02 0.29 -3.13 16 10 H 0.50 2.96 8.96 -347.54 -3.12 -0.16 16 11 N -0.28 -6.44 12.08 -52.13 -0.63 -7.07 16 12 C 0.01 0.19 9.20 22.47 0.21 0.40 16 13 C -0.69 -24.21 5.71 22.24 0.13 -24.09 16 14 S 2.70 104.43 4.85 -56.49 -0.27 104.15 16 15 O -0.98 -37.05 16.49 -128.00 -2.11 -39.16 16 16 O -1.00 -45.15 16.30 -128.00 -2.09 -47.23 16 17 N -1.09 -43.05 4.25 -172.52 -0.73 -43.78 16 18 C 0.28 13.55 2.76 44.25 0.12 13.67 16 19 H 0.02 0.89 7.83 -2.39 -0.02 0.87 16 20 C -0.15 -7.57 9.29 71.98 0.67 -6.90 16 21 C -0.53 -26.33 8.76 25.60 0.22 -26.11 16 22 H 0.08 3.54 7.81 -2.91 -0.02 3.51 16 23 C 0.02 0.83 5.30 84.66 0.45 1.28 16 24 N -0.92 -50.75 11.32 21.45 0.24 -50.51 16 25 Si 0.96 40.48 29.54 68.60 2.03 42.51 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 27 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H 0.11 2.34 8.01 -2.39 -0.02 2.32 16 30 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 31 H 0.07 1.84 5.38 -2.39 -0.01 1.82 16 32 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.17 2.85 7.88 -2.91 -0.02 2.83 16 34 H 0.13 5.24 7.16 -2.91 -0.02 5.22 16 35 H 0.42 14.32 8.42 -96.75 -0.81 13.50 16 36 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 37 H 0.02 1.22 7.71 -2.39 -0.02 1.20 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -72.49 346.23 -2.50 -74.99 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -2.79 Total: 22.29 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 3.70 Total: -41.62 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -0.97 Total: -115.93 kcal Atomic # 8 Polarization: -82.20 SS G_CDS: -4.20 Total: -86.40 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 104.43 SS G_CDS: -0.27 Total: 104.15 kcal Total: -72.49 -2.50 -74.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737299012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.171 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds