Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99550 * 2 1 4 4 O 1.20824 * 120.00484 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00031 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47322 * 180.02562 * 5 3 2 7 7 C 1.36896 * 119.99953 * 280.79025 * 6 5 3 8 8 H 1.07999 * 119.99987 * 315.99159 * 7 6 5 9 9 C 1.39021 * 120.00122 * 135.99305 * 7 6 5 10 10 N 1.31383 * 119.99809 * 338.41837 * 9 7 6 11 11 Si 1.86799 * 120.00354 * 158.42361 * 9 7 6 12 12 H 1.48506 * 109.46971 * 89.99612 * 11 9 7 13 13 H 1.48493 * 109.47422 * 209.99784 * 11 9 7 14 14 H 1.48504 * 109.47137 * 330.00307 * 11 9 7 15 15 C 1.34782 * 119.99780 * 100.79114 * 6 5 3 16 16 O 1.21617 * 119.99420 * 186.78361 * 15 6 5 17 17 C 1.47490 * 119.99853 * 6.78825 * 15 6 5 18 18 C 1.39796 * 120.09133 * 142.27203 * 17 15 6 19 19 C 1.37693 * 119.90594 * 180.27448 * 18 17 15 20 20 C 1.39012 * 120.09054 * 359.50999 * 19 18 17 21 21 O 1.35716 * 119.90532 * 180.21728 * 20 19 18 22 22 C 1.42895 * 116.99735 * 0.24856 * 21 20 19 23 23 C 1.50709 * 109.47048 * 180.02562 * 22 21 20 24 24 O 1.20829 * 119.99555 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00160 * 179.97438 * 23 22 21 26 26 C 1.39016 * 120.18977 * 0.46456 * 20 19 18 27 27 C 1.37688 * 120.09357 * 359.79258 * 26 20 19 28 28 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47427 * 299.99899 * 1 2 3 30 30 H 1.09000 * 109.47207 * 59.99940 * 1 2 3 31 31 H 1.09005 * 109.46896 * 59.99801 * 5 3 2 32 32 H 1.09006 * 109.47104 * 300.00292 * 5 3 2 33 33 H 0.96995 * 120.00262 * 185.05277 * 10 9 7 34 34 H 1.07999 * 120.04951 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.95400 * 179.74247 * 19 18 17 36 36 H 1.09007 * 109.47125 * 299.99890 * 22 21 20 37 37 H 1.09002 * 109.47657 * 60.00254 * 22 21 20 38 38 H 0.96693 * 116.99975 * 180.02562 * 25 23 22 39 39 H 1.07994 * 119.95178 * 179.76868 * 26 20 19 40 40 H 1.07993 * 120.04832 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 3.9632 3.3995 -1.1634 8 1 4.3427 2.9617 -2.0747 9 6 3.4560 4.6939 -1.1727 10 7 2.6289 5.0821 -0.2286 11 14 3.9504 5.8811 -2.5275 12 1 2.9966 5.7649 -3.6598 13 1 3.9277 7.2696 -2.0016 14 1 5.3199 5.5523 -2.9984 15 6 4.3818 3.2639 1.1480 16 8 4.6082 4.4585 1.1752 17 6 4.5452 2.4542 2.3699 18 6 5.5957 2.7216 3.2526 19 6 5.7480 1.9596 4.3894 20 6 4.8530 0.9322 4.6648 21 8 5.0040 0.1864 5.7886 22 6 6.1002 0.5165 6.6437 23 6 6.1082 -0.4115 7.8312 24 8 5.2621 -1.2680 7.9342 25 8 7.0557 -0.2872 8.7738 26 6 3.8066 0.6633 3.7900 27 6 3.6502 1.4170 2.6484 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 2.2179 5.9595 -0.2745 34 1 6.2896 3.5215 3.0409 35 1 6.5617 2.1628 5.0697 36 1 7.0352 0.4099 6.0935 37 1 5.9961 1.5457 6.9872 38 1 7.0199 -0.9054 9.5164 39 1 3.1158 -0.1382 4.0059 40 1 2.8373 1.2071 1.9690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737602921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -167.606692 kcal Electronic energy + Delta-G solvation = -29223.155280 eV Core-core repulsion = 24778.163156 eV Total energy + Delta-G solvation = -4444.992124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.86381 -40.21482 -39.62054 -38.49235 -36.80838 -36.35605 -35.70678 -34.15315 -32.11503 -31.08136 -30.24757 -28.79559 -28.44264 -26.30763 -24.88275 -23.22516 -22.57742 -21.53832 -20.71218 -19.56209 -18.85035 -17.84084 -17.42628 -16.99918 -16.96083 -16.88016 -16.42622 -15.94086 -15.44009 -15.34609 -15.21378 -14.65085 -14.37415 -14.16039 -13.75433 -13.48256 -13.32851 -13.08018 -12.96718 -12.66071 -12.50656 -12.24459 -11.96518 -11.85412 -11.63105 -11.56494 -11.09136 -11.03238 -10.86022 -10.82350 -10.66928 -10.53992 -10.22364 -10.18694 -9.64565 -8.84503 -8.78051 -8.34957 -7.94674 -7.25238 -6.06334 -3.85912 1.35781 1.52965 1.75278 1.98504 2.99597 3.18359 3.31867 3.40855 3.43137 3.43567 3.75998 4.26784 4.51703 4.54724 4.61733 4.72856 4.80612 4.94269 5.03276 5.27025 5.42597 5.47098 5.49715 5.52514 5.54314 5.67595 5.74108 5.77966 5.90640 6.02792 6.03276 6.20560 6.35816 6.49564 6.76502 6.79257 7.01664 7.30452 7.45362 7.60454 8.19767 8.58492 8.94648 9.05130 9.55489 10.12756 10.98819 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003209 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.665707 B = 8723.790868 C =10286.886400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.416 3.584 4 O -0.445 6.445 5 C 0.093 3.907 6 N -0.422 5.422 7 C -0.365 4.365 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.793 5.793 11 Si 0.910 3.090 12 H -0.283 1.283 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.514 3.486 16 O -0.516 6.516 17 C -0.125 4.125 18 C -0.039 4.039 19 C -0.211 4.211 20 C 0.121 3.879 21 O -0.297 6.297 22 C 0.068 3.932 23 C 0.483 3.517 24 O -0.492 6.492 25 O -0.512 6.512 26 C -0.145 4.145 27 C -0.074 4.074 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.263 0.737 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.418 0.582 39 H 0.133 0.867 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -12.054 11.626 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.254 3.746 4 O -0.326 6.326 5 C -0.033 4.033 6 N -0.143 5.143 7 C -0.491 4.491 8 H 0.101 0.899 9 C -0.134 4.134 10 N -0.423 5.423 11 Si 0.737 3.263 12 H -0.209 1.209 13 H -0.209 1.209 14 H -0.194 1.194 15 C 0.303 3.697 16 O -0.393 6.393 17 C -0.128 4.128 18 C -0.058 4.058 19 C -0.230 4.230 20 C 0.076 3.924 21 O -0.210 6.210 22 C -0.008 4.008 23 C 0.323 3.677 24 O -0.377 6.377 25 O -0.326 6.326 26 C -0.164 4.164 27 C -0.092 4.092 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.278 0.722 39 H 0.151 0.849 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.089 -11.017 11.513 16.728 hybrid contribution -0.250 0.305 -0.116 0.411 sum 4.839 -10.711 11.397 16.372 Atomic orbital electron populations 1.23073 0.78066 1.02457 1.02169 1.86549 1.22261 1.35264 1.85513 1.25138 0.93423 0.81455 0.74612 1.90836 1.65901 1.35334 1.40538 1.21832 0.86364 0.90095 1.04994 1.42953 1.55751 1.07216 1.08419 1.18916 1.45308 0.97067 0.87821 0.89913 1.25280 0.93273 0.98495 0.96324 1.69933 1.21525 1.19173 1.31687 0.86258 0.79138 0.80349 0.80566 1.20934 1.20942 1.19425 1.17712 0.82149 0.87427 0.82461 1.90650 1.51565 1.13868 1.83206 1.20552 0.96935 0.97356 0.98004 1.20959 0.96244 0.97024 0.91561 1.21107 1.01796 0.99177 1.00906 1.19003 0.95818 0.91523 0.86016 1.85997 1.47038 1.55925 1.32088 1.21790 0.92202 0.97964 0.88878 1.22726 0.78423 0.83307 0.83251 1.90788 1.37014 1.33790 1.76145 1.84439 1.52242 1.60857 1.35041 1.20286 0.98576 1.03219 0.94287 1.21504 0.98414 0.93655 0.95673 0.89042 0.92515 0.92436 0.88308 0.87034 0.92680 0.84763 0.85301 0.87393 0.87425 0.72205 0.84898 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.38 -6.40 10.57 -39.25 -0.41 -6.81 16 3 C 0.42 8.56 5.98 36.01 0.22 8.78 16 4 O -0.45 -11.23 15.88 -18.75 -0.30 -11.53 16 5 C 0.09 1.83 5.47 -5.19 -0.03 1.80 16 6 N -0.42 -10.46 2.12 -117.29 -0.25 -10.71 16 7 C -0.36 -9.93 8.82 -15.00 -0.13 -10.06 16 8 H 0.08 2.13 7.92 -52.49 -0.42 1.72 16 9 C 0.08 2.30 4.28 -17.45 -0.07 2.22 16 10 N -0.79 -23.93 11.74 55.50 0.65 -23.28 16 11 Si 0.91 21.89 29.61 -169.99 -5.03 16.86 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 15 C 0.51 13.00 6.81 -12.49 -0.09 12.92 16 16 O -0.52 -15.08 14.38 5.26 0.08 -15.01 16 17 C -0.12 -2.50 5.39 -104.96 -0.57 -3.07 16 18 C -0.04 -0.65 9.61 -39.20 -0.38 -1.03 16 19 C -0.21 -2.82 9.01 -39.49 -0.36 -3.18 16 20 C 0.12 1.70 6.70 -39.01 -0.26 1.44 16 21 O -0.30 -3.83 9.66 -38.81 -0.37 -4.20 16 22 C 0.07 0.59 5.33 36.01 0.19 0.78 16 23 C 0.48 4.45 8.40 36.01 0.30 4.75 16 24 O -0.49 -6.54 17.26 -25.48 -0.44 -6.98 16 25 O -0.51 -3.00 13.42 -39.26 -0.53 -3.53 16 26 C -0.15 -2.20 9.97 -39.49 -0.39 -2.60 16 27 C -0.07 -1.31 7.35 -39.20 -0.29 -1.60 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.10 1.71 8.12 -51.93 -0.42 1.29 16 32 H 0.11 1.90 4.30 -51.93 -0.22 1.68 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.13 2.22 8.04 -52.49 -0.42 1.80 16 35 H 0.13 1.23 6.28 -52.49 -0.33 0.90 16 36 H 0.11 0.68 7.64 -51.93 -0.40 0.29 16 37 H 0.11 0.73 7.66 -51.93 -0.40 0.33 16 38 H 0.42 0.71 9.10 45.56 0.41 1.12 16 39 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.13 2.45 4.01 -52.49 -0.21 2.24 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -39.16 353.47 -5.29 -44.46 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.23 Total: 2.66 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: -0.79 Total: 12.75 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.40 Total: -33.99 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.98 Total: -48.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.16 -5.29 -44.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737602921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.149 kcal (2) G-P(sol) polarization free energy of solvation -39.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds