Wall clock time and date at job start Tue Mar 31 2020 20:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99550 * 2 1 4 4 O 1.20824 * 120.00484 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00031 * 179.97438 * 3 2 1 6 6 N 1.46501 * 109.47322 * 180.02562 * 5 3 2 7 7 C 1.36896 * 119.99953 * 280.79025 * 6 5 3 8 8 H 1.07999 * 119.99987 * 315.99159 * 7 6 5 9 9 C 1.39021 * 120.00122 * 135.99305 * 7 6 5 10 10 N 1.31383 * 119.99809 * 338.41837 * 9 7 6 11 11 Si 1.86799 * 120.00354 * 158.42361 * 9 7 6 12 12 H 1.48506 * 109.46971 * 89.99612 * 11 9 7 13 13 H 1.48493 * 109.47422 * 209.99784 * 11 9 7 14 14 H 1.48504 * 109.47137 * 330.00307 * 11 9 7 15 15 C 1.34782 * 119.99780 * 100.79114 * 6 5 3 16 16 O 1.21617 * 119.99420 * 186.78361 * 15 6 5 17 17 C 1.47490 * 119.99853 * 6.78825 * 15 6 5 18 18 C 1.39796 * 120.09133 * 142.27203 * 17 15 6 19 19 C 1.37693 * 119.90594 * 180.27448 * 18 17 15 20 20 C 1.39012 * 120.09054 * 359.50999 * 19 18 17 21 21 O 1.35716 * 119.90532 * 180.21728 * 20 19 18 22 22 C 1.42895 * 116.99735 * 0.24856 * 21 20 19 23 23 C 1.50709 * 109.47048 * 180.02562 * 22 21 20 24 24 O 1.20829 * 119.99555 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00160 * 179.97438 * 23 22 21 26 26 C 1.39016 * 120.18977 * 0.46456 * 20 19 18 27 27 C 1.37688 * 120.09357 * 359.79258 * 26 20 19 28 28 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47427 * 299.99899 * 1 2 3 30 30 H 1.09000 * 109.47207 * 59.99940 * 1 2 3 31 31 H 1.09005 * 109.46896 * 59.99801 * 5 3 2 32 32 H 1.09006 * 109.47104 * 300.00292 * 5 3 2 33 33 H 0.96995 * 120.00262 * 185.05277 * 10 9 7 34 34 H 1.07999 * 120.04951 * 359.97438 * 18 17 15 35 35 H 1.07997 * 119.95400 * 179.74247 * 19 18 17 36 36 H 1.09007 * 109.47125 * 299.99890 * 22 21 20 37 37 H 1.09002 * 109.47657 * 60.00254 * 22 21 20 38 38 H 0.96693 * 116.99975 * 180.02562 * 25 23 22 39 39 H 1.07994 * 119.95178 * 179.76868 * 26 20 19 40 40 H 1.07993 * 120.04832 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 3.9632 3.3995 -1.1634 8 1 4.3427 2.9617 -2.0747 9 6 3.4560 4.6939 -1.1727 10 7 2.6289 5.0821 -0.2286 11 14 3.9504 5.8811 -2.5275 12 1 2.9966 5.7649 -3.6598 13 1 3.9277 7.2696 -2.0016 14 1 5.3199 5.5523 -2.9984 15 6 4.3818 3.2639 1.1480 16 8 4.6082 4.4585 1.1752 17 6 4.5452 2.4542 2.3699 18 6 5.5957 2.7216 3.2526 19 6 5.7480 1.9596 4.3894 20 6 4.8530 0.9322 4.6648 21 8 5.0040 0.1864 5.7886 22 6 6.1002 0.5165 6.6437 23 6 6.1082 -0.4115 7.8312 24 8 5.2621 -1.2680 7.9342 25 8 7.0557 -0.2872 8.7738 26 6 3.8066 0.6633 3.7900 27 6 3.6502 1.4170 2.6484 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9564 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 2.2179 5.9595 -0.2745 34 1 6.2896 3.5215 3.0409 35 1 6.5617 2.1628 5.0697 36 1 7.0352 0.4099 6.0935 37 1 5.9961 1.5457 6.9872 38 1 7.0199 -0.9054 9.5164 39 1 3.1158 -0.1382 4.0059 40 1 2.8373 1.2071 1.9690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737602921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:04 Heat of formation + Delta-G solvation = -196.094006 kcal Electronic energy + Delta-G solvation = -29224.390583 eV Core-core repulsion = 24778.163156 eV Total energy + Delta-G solvation = -4446.227427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.89569 -41.49124 -40.80520 -39.99605 -38.05976 -37.32987 -37.09371 -36.03734 -34.04123 -32.27797 -31.51850 -29.99977 -29.76222 -27.74968 -26.67438 -24.24759 -24.04870 -22.47973 -22.22420 -21.24425 -19.70588 -18.99211 -18.68312 -18.56433 -18.14016 -17.88576 -17.69091 -17.39143 -16.95683 -16.61198 -16.45937 -16.06753 -15.94046 -15.54341 -15.07216 -14.97962 -14.72656 -14.37122 -14.18488 -13.94865 -13.72430 -13.60711 -13.41793 -13.21964 -12.89671 -12.75707 -12.71425 -12.64224 -12.57702 -12.14951 -12.07490 -11.90739 -11.64499 -11.57596 -11.37430 -10.81672 -10.25281 -10.02834 -9.29650 -9.18878 -8.13717 -5.95986 0.05651 0.29771 1.08830 1.27343 1.38187 1.39434 1.45207 1.53039 1.71684 2.32170 2.40495 2.64436 2.87756 3.04729 3.30572 3.72405 3.81172 3.95098 4.04076 4.06944 4.15005 4.18079 4.25238 4.28011 4.37232 4.40624 4.42633 4.48932 4.57824 4.73590 4.98935 5.10317 5.22128 5.45630 5.48849 5.51013 5.53539 5.58979 6.16334 6.24962 6.92036 6.94395 7.02682 7.13490 7.58017 8.22044 8.92009 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.003209 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.665707 B = 8723.790868 C =10286.886400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.365 6.365 3 C 0.426 3.574 4 O -0.500 6.500 5 C 0.091 3.909 6 N -0.439 5.439 7 C -0.380 4.380 8 H 0.090 0.910 9 C 0.029 3.971 10 N -0.839 5.839 11 Si 0.970 3.030 12 H -0.271 1.271 13 H -0.294 1.294 14 H -0.259 1.259 15 C 0.506 3.494 16 O -0.572 6.572 17 C -0.160 4.160 18 C -0.042 4.042 19 C -0.191 4.191 20 C 0.142 3.858 21 O -0.309 6.309 22 C 0.054 3.946 23 C 0.492 3.508 24 O -0.541 6.541 25 O -0.499 6.499 26 C -0.146 4.146 27 C -0.076 4.076 28 H 0.139 0.861 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.124 0.876 32 H 0.141 0.859 33 H 0.254 0.746 34 H 0.131 0.869 35 H 0.177 0.823 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.437 0.563 39 H 0.151 0.849 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -14.367 13.378 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C 0.267 3.733 4 O -0.385 6.385 5 C -0.034 4.034 6 N -0.159 5.159 7 C -0.507 4.507 8 H 0.108 0.892 9 C -0.181 4.181 10 N -0.471 5.471 11 Si 0.794 3.206 12 H -0.196 1.196 13 H -0.220 1.220 14 H -0.183 1.183 15 C 0.296 3.704 16 O -0.453 6.453 17 C -0.164 4.164 18 C -0.061 4.061 19 C -0.209 4.209 20 C 0.097 3.903 21 O -0.223 6.223 22 C -0.021 4.021 23 C 0.335 3.665 24 O -0.431 6.431 25 O -0.314 6.314 26 C -0.164 4.164 27 C -0.095 4.095 28 H 0.157 0.843 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.194 0.806 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.300 0.700 39 H 0.169 0.831 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.780 -13.411 13.274 20.050 hybrid contribution -0.685 0.782 -0.404 1.115 sum 6.095 -12.629 12.870 19.034 Atomic orbital electron populations 1.23428 0.75923 1.05363 1.01614 1.86513 1.24170 1.32899 1.84630 1.25108 0.93680 0.81530 0.73028 1.90832 1.67029 1.37274 1.43352 1.21995 0.86193 0.87627 1.07571 1.43079 1.56130 1.08817 1.07889 1.19253 1.44732 0.97702 0.88978 0.89198 1.26144 0.93163 1.00301 0.98490 1.70098 1.23767 1.18927 1.34290 0.85335 0.79423 0.77557 0.78247 1.19610 1.22035 1.18257 1.18549 0.80507 0.87351 0.83963 1.90587 1.53796 1.16366 1.84557 1.20220 0.99964 0.98801 0.97372 1.21035 0.95385 0.97493 0.92174 1.21433 1.02365 0.97345 0.99758 1.18998 0.94718 0.90794 0.85838 1.85988 1.48875 1.55678 1.31735 1.22270 0.92085 0.99224 0.88565 1.22826 0.77850 0.82326 0.83523 1.90787 1.39064 1.35932 1.77336 1.84402 1.50676 1.61202 1.35159 1.20414 0.99402 1.03093 0.93492 1.21284 0.97735 0.93691 0.96764 0.84274 0.92977 0.93264 0.85855 0.84216 0.93731 0.85107 0.80557 0.84131 0.84679 0.69980 0.83082 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.56 113.37 1.20 2.00 16 2 O -0.37 -11.97 10.57 -51.39 -0.54 -12.51 16 3 C 0.43 17.74 5.98 71.24 0.43 18.17 16 4 O -0.50 -26.22 15.88 21.97 0.35 -25.87 16 5 C 0.09 3.59 5.47 85.63 0.47 4.06 16 6 N -0.44 -22.43 2.12 -643.24 -1.36 -23.79 16 7 C -0.38 -21.34 8.82 84.09 0.74 -20.60 16 8 H 0.09 4.73 7.92 -2.91 -0.02 4.70 16 9 C 0.03 1.69 4.28 84.95 0.36 2.05 16 10 N -0.84 -53.48 11.74 21.68 0.25 -53.23 16 11 Si 0.97 46.67 29.61 68.60 2.03 48.70 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 C 0.51 26.62 6.81 86.68 0.59 27.21 16 16 O -0.57 -35.27 14.38 -4.08 -0.06 -35.33 16 17 C -0.16 -6.46 5.39 -20.08 -0.11 -6.57 16 18 C -0.04 -1.36 9.61 22.52 0.22 -1.14 16 19 C -0.19 -4.36 9.01 22.33 0.20 -4.16 16 20 C 0.14 3.47 6.70 22.64 0.15 3.62 16 21 O -0.31 -6.72 9.66 -71.30 -0.69 -7.40 16 22 C 0.05 0.67 5.33 71.24 0.38 1.05 16 23 C 0.49 7.35 8.40 71.24 0.60 7.95 16 24 O -0.54 -13.23 17.26 28.39 0.49 -12.74 16 25 O -0.50 -3.90 13.42 -51.42 -0.69 -4.59 16 26 C -0.15 -4.08 9.97 22.33 0.22 -3.85 16 27 C -0.08 -2.65 7.35 22.52 0.17 -2.49 16 28 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.44 8.13 -2.39 -0.02 1.43 16 30 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 31 H 0.12 4.17 8.12 -2.38 -0.02 4.15 16 32 H 0.14 4.70 4.30 -2.38 -0.01 4.69 16 33 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.13 4.28 8.04 -2.91 -0.02 4.26 16 35 H 0.18 2.29 6.28 -2.91 -0.02 2.27 16 36 H 0.14 0.92 7.64 -2.38 -0.02 0.90 16 37 H 0.14 1.03 7.66 -2.39 -0.02 1.01 16 38 H 0.44 -0.02 9.10 -74.06 -0.67 -0.70 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.12 4.44 4.01 -2.91 -0.01 4.43 16 Total: -1.00 -92.30 353.47 5.85 -86.45 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.45 Total: 13.01 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 5.61 Total: 27.29 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -1.11 Total: -77.02 kcal Atomic # 8 Polarization: -97.29 SS G_CDS: -1.14 Total: -98.43 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -92.30 5.85 -86.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737602921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.643 kcal (2) G-P(sol) polarization free energy of solvation -92.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds