Wall clock time and date at job start Tue Mar 31 2020 20:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99816 * 2 1 4 4 O 1.20822 * 120.00420 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99479 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46798 * 180.02562 * 5 3 2 7 7 C 1.36876 * 119.99686 * 280.66922 * 6 5 3 8 8 H 1.07995 * 120.00087 * 316.00461 * 7 6 5 9 9 C 1.39043 * 119.99332 * 136.00827 * 7 6 5 10 10 N 1.31362 * 120.00640 * 338.49073 * 9 7 6 11 11 Si 1.86806 * 119.99863 * 158.49506 * 9 7 6 12 12 H 1.48499 * 109.46933 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47213 * 119.99235 * 11 9 7 14 14 H 1.48491 * 109.47498 * 239.99787 * 11 9 7 15 15 C 1.34779 * 120.00210 * 100.67480 * 6 5 3 16 16 O 1.21588 * 120.00238 * 186.76316 * 15 6 5 17 17 C 1.47745 * 119.99772 * 6.76148 * 15 6 5 18 18 C 1.39674 * 120.12377 * 322.23356 * 17 15 6 19 19 C 1.37942 * 119.95663 * 180.02562 * 18 17 15 20 20 C 1.38310 * 120.21481 * 359.74693 * 19 18 17 21 21 C 1.38828 * 120.24877 * 0.51185 * 20 19 18 22 22 O 1.35903 * 119.98235 * 179.76362 * 21 20 19 23 23 C 1.42894 * 116.99978 * 359.72577 * 22 21 20 24 24 C 1.50705 * 109.47478 * 179.97438 * 23 22 21 25 25 O 1.20825 * 119.99477 * 359.72133 * 24 23 22 26 26 O 1.34233 * 120.00229 * 180.02562 * 24 23 22 27 27 C 1.38474 * 120.03686 * 359.48714 * 21 20 19 28 28 H 1.09004 * 109.46772 * 59.99678 * 1 2 3 29 29 H 1.08994 * 109.47108 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46714 * 300.00121 * 1 2 3 31 31 H 1.08991 * 109.47218 * 59.99925 * 5 3 2 32 32 H 1.08999 * 109.46904 * 299.99747 * 5 3 2 33 33 H 0.97001 * 120.00366 * 185.04787 * 10 9 7 34 34 H 1.08000 * 120.02139 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.89608 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.87714 * 180.25838 * 20 19 18 37 37 H 1.09000 * 109.47382 * 60.00083 * 23 22 21 38 38 H 1.08999 * 109.47366 * 299.99534 * 23 22 21 39 39 H 0.96698 * 116.99355 * 179.72730 * 26 24 23 40 40 H 1.07996 * 120.10849 * 180.22920 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 3.9648 3.3989 -1.1643 8 1 4.3452 2.9608 -2.0751 9 6 3.4579 4.6936 -1.1743 10 7 2.6311 5.0827 -0.2305 11 14 3.9525 5.8798 -2.5300 12 1 4.8874 5.2023 -3.4638 13 1 2.7422 6.3170 -3.2711 14 1 4.6215 7.0633 -1.9326 15 6 4.3807 3.2639 1.1474 16 8 4.6074 4.4582 1.1746 17 6 4.5424 2.4532 2.3718 18 6 3.6471 1.4179 2.6504 19 6 3.8010 0.6635 3.7949 20 6 4.8428 0.9251 4.6662 21 6 5.7346 1.9554 4.4006 22 8 6.7535 2.2109 5.2629 23 6 6.8428 1.3839 6.4248 24 6 8.0249 1.8114 7.2561 25 8 8.7225 2.7268 6.8884 26 8 8.3063 1.1713 8.4020 27 6 5.5899 2.7193 3.2547 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7805 0.8892 33 1 2.2204 5.9602 -0.2770 34 1 2.8348 1.2083 1.9702 35 1 3.1084 -0.1371 4.0092 36 1 4.9606 0.3283 5.5586 37 1 6.9690 0.3444 6.1221 38 1 5.9301 1.4830 7.0124 39 1 9.0768 1.4788 8.8987 40 1 6.2851 3.5187 3.0452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737602989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:08 Heat of formation + Delta-G solvation = -166.894776 kcal Electronic energy + Delta-G solvation = -29263.346381 eV Core-core repulsion = 24818.385127 eV Total energy + Delta-G solvation = -4444.961253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.81056 -40.20648 -39.60309 -38.46355 -36.82389 -36.32765 -35.73130 -34.16437 -32.13611 -30.99962 -30.20529 -28.84658 -28.33049 -26.30203 -25.12161 -23.16318 -22.39107 -21.74229 -20.69214 -19.64057 -18.72014 -17.82335 -17.12250 -16.99662 -16.91000 -16.69093 -16.45954 -16.07284 -15.44891 -15.33301 -15.16572 -14.87314 -14.53280 -14.17668 -13.74566 -13.52081 -13.22086 -13.01012 -12.95514 -12.70898 -12.46951 -12.22729 -11.92881 -11.77893 -11.63152 -11.45674 -11.13350 -11.02441 -10.86267 -10.73002 -10.67498 -10.63596 -10.22606 -10.17443 -9.65864 -8.83056 -8.72640 -8.29250 -8.04391 -7.27201 -6.07436 -3.87138 1.30964 1.58894 1.81152 2.03128 2.98989 3.16638 3.32913 3.42070 3.44463 3.46100 3.77354 4.26559 4.53023 4.55694 4.64839 4.76005 4.77053 4.97977 5.03280 5.27435 5.37259 5.40927 5.48500 5.50872 5.53917 5.69259 5.72050 5.80848 5.93487 6.04202 6.07879 6.19627 6.35290 6.54000 6.73910 6.82456 6.99765 7.36329 7.50940 7.59775 8.18047 8.57240 8.92162 9.03408 9.53505 10.10212 10.97546 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.003434 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.073355 B = 8152.368037 C =10020.064031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.418 3.582 4 O -0.446 6.446 5 C 0.093 3.907 6 N -0.420 5.420 7 C -0.363 4.363 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.792 5.792 11 Si 0.910 3.090 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.279 1.279 15 C 0.509 3.491 16 O -0.510 6.510 17 C -0.053 4.053 18 C -0.145 4.145 19 C -0.084 4.084 20 C -0.210 4.210 21 C 0.119 3.881 22 O -0.295 6.295 23 C 0.070 3.930 24 C 0.481 3.519 25 O -0.488 6.488 26 O -0.514 6.514 27 C -0.103 4.103 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.263 0.737 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.418 0.582 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -15.048 12.222 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.255 3.745 4 O -0.326 6.326 5 C -0.033 4.033 6 N -0.141 5.141 7 C -0.490 4.490 8 H 0.103 0.897 9 C -0.135 4.135 10 N -0.422 5.422 11 Si 0.737 3.263 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.205 1.205 15 C 0.297 3.703 16 O -0.387 6.387 17 C -0.057 4.057 18 C -0.164 4.164 19 C -0.102 4.102 20 C -0.229 4.229 21 C 0.075 3.925 22 O -0.209 6.209 23 C -0.007 4.007 24 C 0.321 3.679 25 O -0.373 6.373 26 O -0.327 6.327 27 C -0.122 4.122 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.278 0.722 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.678 -13.597 11.988 18.324 hybrid contribution 0.001 0.592 -0.156 0.612 sum 2.679 -13.005 11.833 17.786 Atomic orbital electron populations 1.23068 0.78111 1.02406 1.02176 1.86545 1.22216 1.35302 1.85559 1.25110 0.93386 0.81428 0.74545 1.90836 1.65898 1.35334 1.40575 1.21851 0.86396 0.89943 1.05156 1.42929 1.55564 1.07310 1.08292 1.18997 1.45111 0.97087 0.87758 0.89714 1.25294 0.93262 0.98486 0.96411 1.69930 1.21484 1.19083 1.31671 0.86196 0.78336 0.81109 0.80677 1.19392 1.21224 1.20513 1.17740 0.82569 0.87485 0.82484 1.90667 1.51198 1.13807 1.82983 1.20400 0.94132 0.95051 0.96105 1.21621 1.00216 0.96363 0.98190 1.20811 0.96843 0.99161 0.93354 1.21172 0.98638 1.00597 1.02518 1.18733 0.87914 0.95531 0.90308 1.86085 1.47745 1.55629 1.31473 1.21755 0.95780 0.96121 0.87024 1.22727 0.85464 0.79998 0.79728 1.90806 1.49001 1.27881 1.69654 1.84430 1.52055 1.61155 1.35086 1.20383 0.99657 1.00427 0.91764 0.92433 0.89072 0.92548 0.88302 0.86800 0.92645 0.85417 0.85500 0.85592 0.87534 0.87593 0.72225 0.84244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.22 10.57 -39.26 -0.41 -6.64 16 3 C 0.42 8.48 5.98 36.01 0.22 8.70 16 4 O -0.45 -11.16 15.88 -18.75 -0.30 -11.46 16 5 C 0.09 1.81 5.47 -5.19 -0.03 1.78 16 6 N -0.42 -10.49 2.12 -117.21 -0.25 -10.73 16 7 C -0.36 -9.95 8.83 -15.00 -0.13 -10.08 16 8 H 0.09 2.20 7.92 -52.49 -0.42 1.78 16 9 C 0.08 2.29 4.28 -17.45 -0.07 2.22 16 10 N -0.79 -24.01 11.74 55.50 0.65 -23.36 16 11 Si 0.91 22.09 29.61 -169.99 -5.03 17.05 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.51 13.15 6.82 -12.37 -0.08 13.07 16 16 O -0.51 -15.32 14.38 5.29 0.08 -15.24 16 17 C -0.05 -1.09 5.39 -104.98 -0.57 -1.66 16 18 C -0.15 -2.52 7.36 -39.15 -0.29 -2.81 16 19 C -0.08 -1.12 10.03 -39.66 -0.40 -1.52 16 20 C -0.21 -2.62 9.04 -39.34 -0.36 -2.97 16 21 C 0.12 1.83 6.68 -39.28 -0.26 1.56 16 22 O -0.30 -4.25 9.67 -39.39 -0.38 -4.63 16 23 C 0.07 0.64 5.33 36.01 0.19 0.83 16 24 C 0.48 4.80 8.40 36.01 0.30 5.11 16 25 O -0.49 -7.09 17.26 -25.48 -0.44 -7.53 16 26 O -0.51 -3.22 13.42 -39.27 -0.53 -3.75 16 27 C -0.10 -1.94 9.56 -39.00 -0.37 -2.31 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 31 H 0.10 1.70 8.12 -51.93 -0.42 1.28 16 32 H 0.11 1.92 4.31 -51.93 -0.22 1.70 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.13 2.31 4.01 -52.49 -0.21 2.10 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.13 1.06 6.28 -52.49 -0.33 0.73 16 37 H 0.11 0.69 7.64 -51.93 -0.40 0.29 16 38 H 0.11 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.42 0.92 9.10 45.56 0.41 1.33 16 40 H 0.14 2.78 8.04 -52.49 -0.42 2.36 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -39.70 353.55 -5.30 -45.00 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -3.23 Total: 2.49 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -0.79 Total: 13.48 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.40 Total: -34.10 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -1.98 Total: -49.25 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.70 -5.30 -45.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737602989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.896 kcal (2) G-P(sol) polarization free energy of solvation -39.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds