Wall clock time and date at job start Tue Mar 31 2020 20:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99816 * 2 1 4 4 O 1.20822 * 120.00420 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99479 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.46798 * 180.02562 * 5 3 2 7 7 C 1.36876 * 119.99686 * 280.66922 * 6 5 3 8 8 H 1.07995 * 120.00087 * 316.00461 * 7 6 5 9 9 C 1.39043 * 119.99332 * 136.00827 * 7 6 5 10 10 N 1.31362 * 120.00640 * 338.49073 * 9 7 6 11 11 Si 1.86806 * 119.99863 * 158.49506 * 9 7 6 12 12 H 1.48499 * 109.46933 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47213 * 119.99235 * 11 9 7 14 14 H 1.48491 * 109.47498 * 239.99787 * 11 9 7 15 15 C 1.34779 * 120.00210 * 100.67480 * 6 5 3 16 16 O 1.21588 * 120.00238 * 186.76316 * 15 6 5 17 17 C 1.47745 * 119.99772 * 6.76148 * 15 6 5 18 18 C 1.39674 * 120.12377 * 322.23356 * 17 15 6 19 19 C 1.37942 * 119.95663 * 180.02562 * 18 17 15 20 20 C 1.38310 * 120.21481 * 359.74693 * 19 18 17 21 21 C 1.38828 * 120.24877 * 0.51185 * 20 19 18 22 22 O 1.35903 * 119.98235 * 179.76362 * 21 20 19 23 23 C 1.42894 * 116.99978 * 359.72577 * 22 21 20 24 24 C 1.50705 * 109.47478 * 179.97438 * 23 22 21 25 25 O 1.20825 * 119.99477 * 359.72133 * 24 23 22 26 26 O 1.34233 * 120.00229 * 180.02562 * 24 23 22 27 27 C 1.38474 * 120.03686 * 359.48714 * 21 20 19 28 28 H 1.09004 * 109.46772 * 59.99678 * 1 2 3 29 29 H 1.08994 * 109.47108 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46714 * 300.00121 * 1 2 3 31 31 H 1.08991 * 109.47218 * 59.99925 * 5 3 2 32 32 H 1.08999 * 109.46904 * 299.99747 * 5 3 2 33 33 H 0.97001 * 120.00366 * 185.04787 * 10 9 7 34 34 H 1.08000 * 120.02139 * 0.02562 * 18 17 15 35 35 H 1.08001 * 119.89608 * 180.02562 * 19 18 17 36 36 H 1.07997 * 119.87714 * 180.25838 * 20 19 18 37 37 H 1.09000 * 109.47382 * 60.00083 * 23 22 21 38 38 H 1.08999 * 109.47366 * 299.99534 * 23 22 21 39 39 H 0.96698 * 116.99355 * 179.72730 * 26 24 23 40 40 H 1.07996 * 120.10849 * 180.22920 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 3.9648 3.3989 -1.1643 8 1 4.3452 2.9608 -2.0751 9 6 3.4579 4.6936 -1.1743 10 7 2.6311 5.0827 -0.2305 11 14 3.9525 5.8798 -2.5300 12 1 4.8874 5.2023 -3.4638 13 1 2.7422 6.3170 -3.2711 14 1 4.6215 7.0633 -1.9326 15 6 4.3807 3.2639 1.1474 16 8 4.6074 4.4582 1.1746 17 6 4.5424 2.4532 2.3718 18 6 3.6471 1.4179 2.6504 19 6 3.8010 0.6635 3.7949 20 6 4.8428 0.9251 4.6662 21 6 5.7346 1.9554 4.4006 22 8 6.7535 2.2109 5.2629 23 6 6.8428 1.3839 6.4248 24 6 8.0249 1.8114 7.2561 25 8 8.7225 2.7268 6.8884 26 8 8.3063 1.1713 8.4020 27 6 5.5899 2.7193 3.2547 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7805 0.8892 33 1 2.2204 5.9602 -0.2770 34 1 2.8348 1.2083 1.9702 35 1 3.1084 -0.1371 4.0092 36 1 4.9606 0.3283 5.5586 37 1 6.9690 0.3444 6.1221 38 1 5.9301 1.4830 7.0124 39 1 9.0768 1.4788 8.8987 40 1 6.2851 3.5187 3.0452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737602989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:07 Heat of formation + Delta-G solvation = -196.904674 kcal Electronic energy + Delta-G solvation = -29264.647708 eV Core-core repulsion = 24818.385127 eV Total energy + Delta-G solvation = -4446.262580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89359 -41.49146 -40.80815 -39.99267 -38.09401 -37.32363 -37.11105 -36.07432 -34.07734 -32.18841 -31.53472 -30.12644 -29.51357 -27.72642 -26.90711 -24.50062 -23.59142 -22.84340 -22.14559 -21.19044 -19.79644 -18.94519 -18.55507 -18.36843 -18.04650 -17.82551 -17.68783 -17.51972 -16.83776 -16.66379 -16.60065 -16.15517 -16.03515 -15.84372 -15.08269 -14.85470 -14.57408 -14.38854 -14.31196 -14.00764 -13.70598 -13.65131 -13.27750 -13.16380 -12.88858 -12.77065 -12.70171 -12.65679 -12.41349 -12.19085 -12.09900 -11.94370 -11.61865 -11.60442 -11.36402 -10.86589 -10.32588 -9.93838 -9.29490 -9.26771 -8.17428 -5.99860 0.00924 0.35888 1.08337 1.28119 1.35323 1.40940 1.43309 1.51129 1.71860 2.30008 2.37654 2.61839 2.86878 3.04101 3.28272 3.76329 3.82595 4.02259 4.07390 4.08775 4.12658 4.18222 4.23248 4.30352 4.40263 4.40731 4.44358 4.50585 4.62004 4.77140 4.92049 5.16870 5.31122 5.45522 5.47101 5.51557 5.53095 5.64309 6.13343 6.29505 6.90949 6.91219 7.01188 7.11378 7.52849 8.16351 8.88380 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.003434 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.073355 B = 8152.368037 C =10020.064031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.362 6.362 3 C 0.429 3.571 4 O -0.501 6.501 5 C 0.089 3.911 6 N -0.435 5.435 7 C -0.379 4.379 8 H 0.093 0.907 9 C 0.028 3.972 10 N -0.837 5.837 11 Si 0.968 3.032 12 H -0.249 1.249 13 H -0.277 1.277 14 H -0.296 1.296 15 C 0.498 3.502 16 O -0.574 6.574 17 C -0.082 4.082 18 C -0.155 4.155 19 C -0.062 4.062 20 C -0.179 4.179 21 C 0.130 3.870 22 O -0.324 6.324 23 C 0.057 3.943 24 C 0.489 3.511 25 O -0.547 6.547 26 O -0.497 6.497 27 C -0.131 4.131 28 H 0.046 0.954 29 H 0.141 0.859 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.436 0.564 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -19.828 14.604 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.279 6.279 3 C 0.270 3.730 4 O -0.386 6.386 5 C -0.035 4.035 6 N -0.155 5.155 7 C -0.506 4.506 8 H 0.111 0.889 9 C -0.182 4.182 10 N -0.469 5.469 11 Si 0.793 3.207 12 H -0.173 1.173 13 H -0.203 1.203 14 H -0.222 1.222 15 C 0.288 3.712 16 O -0.455 6.455 17 C -0.086 4.086 18 C -0.173 4.173 19 C -0.080 4.080 20 C -0.197 4.197 21 C 0.085 3.915 22 O -0.238 6.238 23 C -0.018 4.018 24 C 0.331 3.669 25 O -0.437 6.437 26 O -0.312 6.312 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.159 0.841 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.163 0.837 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.299 0.701 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.344 -18.489 14.380 23.539 hybrid contribution 0.174 1.809 -0.629 1.923 sum 2.518 -16.680 13.751 21.763 Atomic orbital electron populations 1.23436 0.75871 1.05411 1.01593 1.86506 1.24156 1.32644 1.84628 1.24975 0.93477 0.81576 0.72983 1.90838 1.67017 1.37376 1.43413 1.22029 0.86499 0.87101 1.07897 1.43036 1.55805 1.09099 1.07569 1.19332 1.44600 0.97791 0.88899 0.88926 1.26156 0.93194 1.00292 0.98565 1.70084 1.23734 1.18843 1.34226 0.85298 0.78415 0.78508 0.78490 1.17260 1.20261 1.22240 1.18644 0.80921 0.87414 0.84238 1.90597 1.53677 1.16707 1.84521 1.19936 0.96836 0.96781 0.95013 1.21579 0.99285 0.96292 1.00191 1.21314 0.97167 0.98590 0.90923 1.21763 0.95933 0.98588 1.03433 1.18616 0.88535 0.95258 0.89065 1.86047 1.47384 1.57403 1.32986 1.22301 0.96833 0.97079 0.85615 1.22982 0.84932 0.78881 0.80060 1.90806 1.51103 1.30589 1.71221 1.84392 1.52933 1.60103 1.33722 1.20197 0.99577 1.01243 0.94032 0.93529 0.84106 0.92836 0.85830 0.83716 0.93679 0.86372 0.80572 0.79686 0.83553 0.84140 0.70068 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -11.12 10.57 -51.41 -0.54 -11.66 16 3 C 0.43 17.34 5.98 71.24 0.43 17.76 16 4 O -0.50 -25.89 15.88 21.97 0.35 -25.54 16 5 C 0.09 3.48 5.47 85.63 0.47 3.95 16 6 N -0.43 -22.65 2.12 -643.00 -1.36 -24.01 16 7 C -0.38 -21.69 8.83 84.10 0.74 -20.95 16 8 H 0.09 4.94 7.92 -2.91 -0.02 4.92 16 9 C 0.03 1.67 4.28 84.96 0.36 2.03 16 10 N -0.84 -54.26 11.74 21.68 0.25 -54.00 16 11 Si 0.97 47.74 29.61 68.60 2.03 49.77 16 12 H -0.25 -11.28 7.11 99.48 0.71 -10.57 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 15 C 0.50 27.37 6.82 86.76 0.59 27.96 16 16 O -0.57 -37.46 14.38 -3.99 -0.06 -37.52 16 17 C -0.08 -3.49 5.39 -20.10 -0.11 -3.60 16 18 C -0.15 -5.10 7.36 22.55 0.17 -4.93 16 19 C -0.06 -1.33 10.03 22.22 0.22 -1.11 16 20 C -0.18 -3.38 9.04 22.43 0.20 -3.18 16 21 C 0.13 3.68 6.68 22.47 0.15 3.83 16 22 O -0.32 -8.64 9.67 -73.38 -0.71 -9.35 16 23 C 0.06 0.78 5.33 71.24 0.38 1.15 16 24 C 0.49 8.42 8.40 71.24 0.60 9.02 16 25 O -0.55 -15.64 17.26 28.40 0.49 -15.15 16 26 O -0.50 -4.38 13.42 -51.45 -0.69 -5.07 16 27 C -0.13 -5.12 9.56 22.64 0.22 -4.91 16 28 H 0.05 1.26 8.13 -2.38 -0.02 1.24 16 29 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.36 8.13 -2.38 -0.02 1.34 16 31 H 0.12 4.12 8.12 -2.39 -0.02 4.10 16 32 H 0.15 4.71 4.31 -2.39 -0.01 4.70 16 33 H 0.25 15.97 8.31 -92.71 -0.77 15.19 16 34 H 0.12 4.11 4.01 -2.91 -0.01 4.10 16 35 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.19 1.38 6.28 -2.91 -0.02 1.36 16 37 H 0.15 0.89 7.64 -2.39 -0.02 0.87 16 38 H 0.14 1.01 7.67 -2.39 -0.02 0.99 16 39 H 0.44 0.58 9.10 -74.06 -0.67 -0.09 16 40 H 0.11 4.70 8.04 -2.91 -0.02 4.68 16 Total: -1.00 -99.18 353.55 5.83 -93.35 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.45 Total: 10.21 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 5.62 Total: 28.98 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.11 Total: -78.01 kcal Atomic # 8 Polarization: -103.13 SS G_CDS: -1.16 Total: -104.29 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -99.18 5.83 -93.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737602989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.552 kcal (2) G-P(sol) polarization free energy of solvation -99.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds