Wall clock time and date at job start Tue Mar 31 2020 20:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00296 * 2 1 4 4 O 1.20827 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00035 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47182 * 180.02562 * 5 3 2 7 7 C 1.46503 * 119.99937 * 269.99762 * 6 5 3 8 8 C 1.50700 * 109.47125 * 274.62566 * 7 6 5 9 9 O 1.20824 * 119.99895 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99791 * 180.02562 * 8 7 6 11 11 C 1.34779 * 120.00256 * 89.99987 * 6 5 3 12 12 O 1.21585 * 120.00365 * 175.69802 * 11 6 5 13 13 C 1.47537 * 119.99876 * 355.69569 * 11 6 5 14 14 C 1.39669 * 120.19761 * 58.50693 * 13 11 6 15 15 C 1.37823 * 119.92075 * 180.02562 * 14 13 11 16 16 C 1.38576 * 120.32564 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.39897 * 359.97438 * 16 15 14 18 18 C 1.38840 * 120.07287 * 359.95811 * 17 16 15 19 19 O 1.35514 * 120.16126 * 180.02562 * 18 17 16 20 20 C 1.34816 * 117.00216 * 354.21846 * 19 18 17 21 21 H 1.08000 * 119.99592 * 5.13596 * 20 19 18 22 22 C 1.38702 * 120.00211 * 185.13730 * 20 19 18 23 23 N 1.31515 * 119.99952 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 89.99811 * 24 22 20 26 26 H 1.48495 * 109.47056 * 209.99646 * 24 22 20 27 27 H 1.48506 * 109.46954 * 329.99660 * 24 22 20 28 28 H 1.09005 * 109.46967 * 59.99367 * 1 2 3 29 29 H 1.08994 * 109.47680 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46865 * 299.99967 * 1 2 3 31 31 H 1.08997 * 109.47026 * 60.00055 * 5 3 2 32 32 H 1.09011 * 109.47072 * 300.00152 * 5 3 2 33 33 H 1.08997 * 109.46723 * 34.62437 * 7 6 5 34 34 H 1.08997 * 109.47088 * 154.62312 * 7 6 5 35 35 H 0.96703 * 116.99932 * 179.97438 * 10 8 7 36 36 H 1.08001 * 120.03608 * 0.27202 * 14 13 11 37 37 H 1.07997 * 119.83820 * 179.97438 * 15 14 13 38 38 H 1.07996 * 119.80325 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.96283 * 179.97438 * 17 16 15 40 40 H 0.96999 * 120.00146 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1891 3.3828 -1.2682 8 6 5.5900 3.1272 -1.7613 9 8 6.3387 2.4296 -1.1188 10 8 6.0064 3.6754 -2.9136 11 6 4.1734 3.3251 1.1677 12 8 4.5932 4.4662 1.1698 13 6 3.8737 2.6471 2.4433 14 6 4.5188 1.4529 2.7727 15 6 4.2341 0.8241 3.9656 16 6 3.3095 1.3705 4.8413 17 6 2.6641 2.5500 4.5292 18 6 2.9394 3.1981 3.3326 19 8 2.3072 4.3565 3.0246 20 6 1.3354 4.7656 3.8648 21 1 1.1483 4.2224 4.7793 22 6 0.5759 5.8840 3.5546 23 7 0.8040 6.5457 2.4412 24 14 -0.7702 6.4512 4.7191 25 1 -0.2045 7.4137 5.6982 26 1 -1.8502 7.1117 3.9430 27 1 -1.3259 5.2789 5.4418 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7808 -0.8908 32 1 3.9565 0.7804 0.8892 33 1 3.4727 3.0208 -2.0056 34 1 4.0463 4.4529 -1.1179 35 1 6.9133 3.4831 -3.1887 36 1 5.2429 1.0249 2.0952 37 1 4.7334 -0.0994 4.2188 38 1 3.0925 0.8704 5.7736 39 1 1.9445 2.9693 5.2167 40 1 0.2732 7.3280 2.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737614259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:01 Heat of formation + Delta-G solvation = -182.548554 kcal Electronic energy + Delta-G solvation = -30400.762766 eV Core-core repulsion = 25955.122714 eV Total energy + Delta-G solvation = -4445.640052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80509 -40.02514 -39.51291 -38.28156 -36.43235 -36.37650 -36.10181 -34.94286 -32.37448 -31.15192 -29.61241 -29.06807 -27.96745 -26.46855 -25.43996 -23.30129 -21.96094 -21.36374 -21.25567 -19.22982 -18.26320 -18.11912 -17.58428 -17.48867 -16.86476 -16.59437 -16.21324 -15.94572 -15.70426 -15.57513 -14.77443 -14.75713 -14.20683 -13.89722 -13.73662 -13.61610 -13.38531 -13.15382 -12.97598 -12.87086 -12.50946 -12.30784 -12.04697 -11.94955 -11.74103 -11.49827 -11.33996 -11.17196 -10.92126 -10.82265 -10.71987 -10.62345 -10.48520 -10.37363 -9.72161 -9.22158 -8.90138 -8.79357 -8.28879 -7.37388 -6.48225 -4.07941 1.73337 2.20323 2.24388 2.40922 2.46698 2.86001 3.10255 3.11184 3.16002 3.29121 3.55004 3.91323 4.41650 4.78129 4.92392 4.95749 5.01905 5.11363 5.18804 5.21380 5.24277 5.31079 5.35844 5.50815 5.56071 5.63475 5.69999 5.95649 6.10438 6.35159 6.45080 6.51415 6.53737 6.62657 6.89659 6.98483 7.18390 7.24377 7.48467 7.62964 7.87336 7.91615 7.97094 8.61161 8.93542 9.60762 10.67274 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.004706 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.217805 B = 5948.144668 C = 6345.571444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.430 3.570 4 O -0.472 6.472 5 C 0.120 3.880 6 N -0.588 5.588 7 C 0.127 3.873 8 C 0.463 3.537 9 O -0.507 6.507 10 O -0.517 6.517 11 C 0.597 3.403 12 O -0.506 6.506 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.220 4.220 16 C -0.054 4.054 17 C -0.232 4.232 18 C 0.191 3.809 19 O -0.146 6.146 20 C -0.398 4.398 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.841 5.841 24 Si 0.942 3.058 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.408 0.592 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -13.469 -7.275 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.269 3.731 4 O -0.355 6.355 5 C -0.006 4.006 6 N -0.323 5.323 7 C 0.002 3.998 8 C 0.303 3.697 9 O -0.395 6.395 10 O -0.328 6.328 11 C 0.388 3.612 12 O -0.379 6.379 13 C -0.228 4.228 14 C -0.069 4.069 15 C -0.239 4.239 16 C -0.072 4.072 17 C -0.251 4.251 18 C 0.132 3.868 19 O -0.046 6.046 20 C -0.474 4.474 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.473 5.473 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.084 0.916 31 H 0.134 0.866 32 H 0.152 0.848 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.266 0.734 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.150 0.850 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.759 -12.180 -7.277 14.454 hybrid contribution -0.342 0.137 0.439 0.573 sum 2.417 -12.043 -6.838 14.058 Atomic orbital electron populations 1.23223 0.76474 1.03210 1.02809 1.86450 1.23347 1.33540 1.84702 1.24470 0.92792 0.81911 0.73900 1.90821 1.66406 1.35868 1.42434 1.21195 0.87411 0.84309 1.07640 1.47192 1.68680 1.11345 1.05070 1.20788 0.89471 1.02708 0.86784 1.24322 0.91458 0.76032 0.77873 1.90703 1.56237 1.36491 1.56028 1.84541 1.37457 1.70690 1.40113 1.18218 0.75060 0.85150 0.82761 1.90782 1.43074 1.17397 1.86601 1.18573 1.08066 1.00018 0.96131 1.20719 0.97058 0.92294 0.96828 1.20476 1.04463 1.02446 0.96501 1.20906 0.94181 0.94308 0.97832 1.21145 1.06453 0.98777 0.98765 1.19126 0.90505 0.85854 0.91266 1.84000 1.43405 1.29531 1.47631 1.21394 1.11059 1.12475 1.02473 0.88844 1.25360 0.98184 0.95558 0.97144 1.70067 1.38084 1.17100 1.22089 0.85704 0.79347 0.79221 0.79095 1.19694 1.20135 1.19085 0.92144 0.88369 0.91625 0.86582 0.84755 0.86427 0.84640 0.73372 0.86132 0.86866 0.87004 0.84970 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.03 10.56 -39.25 -0.41 -5.44 16 3 C 0.43 7.00 8.02 36.01 0.29 7.29 16 4 O -0.47 -9.82 16.18 -18.75 -0.30 -10.13 16 5 C 0.12 1.69 5.77 -5.20 -0.03 1.66 16 6 N -0.59 -10.42 1.45 -177.66 -0.26 -10.68 16 7 C 0.13 1.91 6.02 -5.19 -0.03 1.88 16 8 C 0.46 6.37 8.39 36.01 0.30 6.68 16 9 O -0.51 -8.26 17.18 -18.75 -0.32 -8.58 16 10 O -0.52 -5.41 13.42 -39.24 -0.53 -5.93 16 11 C 0.60 13.50 6.74 -12.47 -0.08 13.41 16 12 O -0.51 -13.40 16.49 5.26 0.09 -13.32 16 13 C -0.22 -4.93 5.02 -104.81 -0.53 -5.45 16 14 C -0.05 -0.89 7.65 -39.20 -0.30 -1.19 16 15 C -0.22 -3.57 10.02 -39.61 -0.40 -3.97 16 16 C -0.05 -0.94 10.03 -39.53 -0.40 -1.34 16 17 C -0.23 -4.98 9.16 -39.44 -0.36 -5.34 16 18 C 0.19 4.75 6.66 -38.60 -0.26 4.50 16 19 O -0.15 -4.32 9.09 0.78 0.01 -4.31 16 20 C -0.40 -11.30 9.49 30.90 0.29 -11.01 16 21 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 22 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 23 N -0.84 -25.33 13.67 55.48 0.76 -24.57 16 24 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.12 1.18 8.07 -51.93 -0.42 0.76 16 32 H 0.14 1.83 4.24 -51.92 -0.22 1.61 16 33 H 0.12 1.37 8.11 -51.93 -0.42 0.95 16 34 H 0.14 2.29 7.35 -51.93 -0.38 1.90 16 35 H 0.41 2.45 9.10 45.56 0.41 2.87 16 36 H 0.12 1.78 7.13 -52.49 -0.37 1.40 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -39.34 361.63 -4.29 -43.63 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.22 Total: 8.49 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: -0.53 Total: 9.76 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.50 Total: -35.25 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -1.47 Total: -47.71 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.34 -4.29 -43.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737614259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.919 kcal (2) G-P(sol) polarization free energy of solvation -39.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds