Wall clock time and date at job start Tue Mar 31 2020 20:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 117.00296 * 2 1 4 4 O 1.20827 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00035 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47182 * 180.02562 * 5 3 2 7 7 C 1.46503 * 119.99937 * 269.99762 * 6 5 3 8 8 C 1.50700 * 109.47125 * 274.62566 * 7 6 5 9 9 O 1.20824 * 119.99895 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99791 * 180.02562 * 8 7 6 11 11 C 1.34779 * 120.00256 * 89.99987 * 6 5 3 12 12 O 1.21585 * 120.00365 * 175.69802 * 11 6 5 13 13 C 1.47537 * 119.99876 * 355.69569 * 11 6 5 14 14 C 1.39669 * 120.19761 * 58.50693 * 13 11 6 15 15 C 1.37823 * 119.92075 * 180.02562 * 14 13 11 16 16 C 1.38576 * 120.32564 * 0.02562 * 15 14 13 17 17 C 1.38026 * 120.39897 * 359.97438 * 16 15 14 18 18 C 1.38840 * 120.07287 * 359.95811 * 17 16 15 19 19 O 1.35514 * 120.16126 * 180.02562 * 18 17 16 20 20 C 1.34816 * 117.00216 * 354.21846 * 19 18 17 21 21 H 1.08000 * 119.99592 * 5.13596 * 20 19 18 22 22 C 1.38702 * 120.00211 * 185.13730 * 20 19 18 23 23 N 1.31515 * 119.99952 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00037 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47021 * 89.99811 * 24 22 20 26 26 H 1.48495 * 109.47056 * 209.99646 * 24 22 20 27 27 H 1.48506 * 109.46954 * 329.99660 * 24 22 20 28 28 H 1.09005 * 109.46967 * 59.99367 * 1 2 3 29 29 H 1.08994 * 109.47680 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46865 * 299.99967 * 1 2 3 31 31 H 1.08997 * 109.47026 * 60.00055 * 5 3 2 32 32 H 1.09011 * 109.47072 * 300.00152 * 5 3 2 33 33 H 1.08997 * 109.46723 * 34.62437 * 7 6 5 34 34 H 1.08997 * 109.47088 * 154.62312 * 7 6 5 35 35 H 0.96703 * 116.99932 * 179.97438 * 10 8 7 36 36 H 1.08001 * 120.03608 * 0.27202 * 14 13 11 37 37 H 1.07997 * 119.83820 * 179.97438 * 15 14 13 38 38 H 1.07996 * 119.80325 * 179.97438 * 16 15 14 39 39 H 1.07996 * 119.96283 * 179.97438 * 17 16 15 40 40 H 0.96999 * 120.00146 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.1891 3.3828 -1.2682 8 6 5.5900 3.1272 -1.7613 9 8 6.3387 2.4296 -1.1188 10 8 6.0064 3.6754 -2.9136 11 6 4.1734 3.3251 1.1677 12 8 4.5932 4.4662 1.1698 13 6 3.8737 2.6471 2.4433 14 6 4.5188 1.4529 2.7727 15 6 4.2341 0.8241 3.9656 16 6 3.3095 1.3705 4.8413 17 6 2.6641 2.5500 4.5292 18 6 2.9394 3.1981 3.3326 19 8 2.3072 4.3565 3.0246 20 6 1.3354 4.7656 3.8648 21 1 1.1483 4.2224 4.7793 22 6 0.5759 5.8840 3.5546 23 7 0.8040 6.5457 2.4412 24 14 -0.7702 6.4512 4.7191 25 1 -0.2045 7.4137 5.6982 26 1 -1.8502 7.1117 3.9430 27 1 -1.3259 5.2789 5.4418 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7808 -0.8908 32 1 3.9565 0.7804 0.8892 33 1 3.4727 3.0208 -2.0056 34 1 4.0463 4.4529 -1.1179 35 1 6.9133 3.4831 -3.1887 36 1 5.2429 1.0249 2.0952 37 1 4.7334 -0.0994 4.2188 38 1 3.0925 0.8704 5.7736 39 1 1.9445 2.9693 5.2167 40 1 0.2732 7.3280 2.2245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737614259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:00 Heat of formation + Delta-G solvation = -212.404920 kcal Electronic energy + Delta-G solvation = -30402.057436 eV Core-core repulsion = 25955.122714 eV Total energy + Delta-G solvation = -4446.934721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.17629 -41.21564 -41.02944 -39.91807 -38.12167 -37.70860 -37.19273 -36.40572 -34.36414 -32.63116 -30.90867 -30.70126 -29.21918 -27.66568 -27.40617 -24.75714 -23.48777 -22.69997 -22.60148 -20.70330 -19.97731 -19.37840 -19.06453 -18.78395 -18.26395 -18.06840 -17.52350 -17.12313 -17.09583 -16.77447 -16.49562 -16.40300 -15.74018 -15.55436 -15.36439 -15.12541 -14.65807 -14.53811 -14.44410 -14.28474 -14.02144 -13.60518 -13.51191 -13.33373 -13.02161 -12.95699 -12.71634 -12.55729 -12.52672 -12.35563 -12.15440 -11.98881 -11.80238 -11.71280 -11.55980 -10.95123 -10.85985 -10.24402 -9.81721 -9.09704 -8.49375 -6.19534 0.17194 0.66154 1.08887 1.12446 1.19414 1.29673 1.41197 1.48689 1.51479 1.96102 2.13006 2.29824 2.76930 3.10497 3.33984 3.46051 3.80044 3.82335 3.98350 4.06197 4.17103 4.21635 4.26893 4.31152 4.34135 4.34695 4.49691 4.58970 4.70098 4.88788 5.02449 5.06506 5.12205 5.33874 5.45915 5.52773 5.53997 5.66016 5.88205 6.00371 6.12060 6.71395 6.90542 6.92154 6.99978 7.72540 8.72565 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.009794 B = 0.004706 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.217805 B = 5948.144668 C = 6345.571444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.352 6.352 3 C 0.435 3.565 4 O -0.528 6.528 5 C 0.117 3.883 6 N -0.583 5.583 7 C 0.118 3.882 8 C 0.479 3.521 9 O -0.531 6.531 10 O -0.505 6.505 11 C 0.588 3.412 12 O -0.566 6.566 13 C -0.237 4.237 14 C -0.048 4.048 15 C -0.185 4.185 16 C -0.044 4.044 17 C -0.249 4.249 18 C 0.149 3.851 19 O -0.211 6.211 20 C -0.420 4.420 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.912 5.912 24 Si 1.021 2.979 25 H -0.262 1.262 26 H -0.272 1.272 27 H -0.247 1.247 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.042 0.958 31 H 0.167 0.833 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.431 0.569 36 H 0.159 0.841 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.124 0.876 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 -18.090 -6.654 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.276 3.724 4 O -0.416 6.416 5 C -0.006 4.006 6 N -0.316 5.316 7 C -0.006 4.006 8 C 0.320 3.680 9 O -0.421 6.421 10 O -0.319 6.319 11 C 0.379 3.621 12 O -0.444 6.444 13 C -0.242 4.242 14 C -0.066 4.066 15 C -0.203 4.203 16 C -0.062 4.062 17 C -0.268 4.268 18 C 0.096 3.904 19 O -0.115 6.115 20 C -0.495 4.495 21 H 0.124 0.876 22 C -0.221 4.221 23 N -0.548 5.548 24 Si 0.840 3.160 25 H -0.187 1.187 26 H -0.197 1.197 27 H -0.170 1.170 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.060 0.940 31 H 0.184 0.816 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.125 0.875 35 H 0.294 0.706 36 H 0.176 0.824 37 H 0.187 0.813 38 H 0.175 0.825 39 H 0.142 0.858 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.835 -16.930 -6.685 18.602 hybrid contribution -0.421 1.159 0.177 1.246 sum 3.414 -15.770 -6.508 17.399 Atomic orbital electron populations 1.23496 0.75222 1.05747 1.01774 1.86448 1.24495 1.31918 1.83919 1.24887 0.93562 0.81688 0.72214 1.90835 1.67719 1.37818 1.45240 1.21612 0.86057 0.82415 1.10541 1.47105 1.67238 1.12708 1.04571 1.20925 0.91877 1.01226 0.86556 1.23719 0.90401 0.75586 0.78302 1.90690 1.56568 1.37876 1.56939 1.84476 1.39346 1.69713 1.38326 1.18539 0.74423 0.84658 0.84460 1.90735 1.46148 1.19824 1.87685 1.19006 1.07803 1.01438 0.95909 1.21220 0.96657 0.90468 0.98250 1.21189 1.01819 1.02979 0.94308 1.21440 0.92795 0.92325 0.99606 1.21309 1.07361 1.00465 0.97671 1.19859 0.91439 0.85868 0.93275 1.83989 1.45592 1.32577 1.49366 1.21916 1.11501 1.13070 1.03043 0.87609 1.26730 1.00878 0.95441 0.99072 1.70252 1.40682 1.18588 1.25289 0.84570 0.75649 0.79194 0.76620 1.18688 1.19693 1.17027 0.92066 0.83920 0.93952 0.81600 0.83552 0.83031 0.87548 0.70642 0.82411 0.81282 0.82494 0.85802 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.35 -8.97 10.56 -51.41 -0.54 -9.52 16 3 C 0.43 13.80 8.02 71.24 0.57 14.37 16 4 O -0.53 -22.94 16.18 21.96 0.36 -22.58 16 5 C 0.12 3.06 5.77 85.63 0.49 3.55 16 6 N -0.58 -20.79 1.45 -834.27 -1.21 -22.00 16 7 C 0.12 3.60 6.02 85.63 0.52 4.12 16 8 C 0.48 12.64 8.39 71.24 0.60 13.24 16 9 O -0.53 -16.35 17.18 21.97 0.38 -15.98 16 10 O -0.51 -9.64 13.42 -51.36 -0.69 -10.33 16 11 C 0.59 27.69 6.74 86.70 0.58 28.27 16 12 O -0.57 -32.37 16.49 -3.95 -0.07 -32.43 16 13 C -0.24 -10.56 5.02 -19.99 -0.10 -10.66 16 14 C -0.05 -1.52 7.65 22.52 0.17 -1.35 16 15 C -0.18 -4.93 10.02 22.25 0.22 -4.70 16 16 C -0.04 -1.35 10.03 22.30 0.22 -1.12 16 17 C -0.25 -10.67 9.16 22.36 0.20 -10.46 16 18 C 0.15 7.77 6.66 22.91 0.15 7.92 16 19 O -0.21 -13.54 9.09 -19.97 -0.18 -13.72 16 20 C -0.42 -25.56 9.49 67.93 0.64 -24.91 16 21 H 0.11 5.79 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 23 N -0.91 -59.75 13.67 21.62 0.30 -59.45 16 24 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 28 H 0.06 1.35 8.13 -2.38 -0.02 1.33 16 29 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.14 8.13 -2.38 -0.02 1.12 16 31 H 0.17 2.68 8.07 -2.39 -0.02 2.66 16 32 H 0.15 3.45 4.24 -2.38 -0.01 3.44 16 33 H 0.15 3.44 8.11 -2.39 -0.02 3.42 16 34 H 0.11 3.92 7.35 -2.39 -0.02 3.90 16 35 H 0.43 4.07 9.10 -74.06 -0.67 3.40 16 36 H 0.16 3.84 7.13 -2.91 -0.02 3.82 16 37 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 40 H 0.27 16.30 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -99.04 361.63 6.77 -92.27 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.45 Total: 27.83 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 5.95 Total: 19.24 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -0.91 Total: -81.45 kcal Atomic # 8 Polarization: -103.81 SS G_CDS: -0.75 Total: -104.56 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -99.04 6.77 -92.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737614259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.130 kcal (2) G-P(sol) polarization free energy of solvation -99.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds