Wall clock time and date at job start Tue Mar 31 2020 20:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99885 * 2 1 4 4 O 1.20834 * 120.00357 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00180 * 180.02562 * 3 2 1 6 6 O 1.42902 * 109.47399 * 180.02562 * 5 3 2 7 7 C 1.35906 * 117.00005 * 180.02562 * 6 5 3 8 8 C 1.38877 * 119.98024 * 0.02562 * 7 6 5 9 9 C 1.38261 * 120.25094 * 179.97438 * 8 7 6 10 10 C 1.37988 * 120.21356 * 359.72191 * 9 8 7 11 11 C 1.39643 * 119.95657 * 0.53426 * 10 9 8 12 12 C 1.47739 * 120.12530 * 179.73960 * 11 10 9 13 13 O 1.21587 * 119.99961 * 210.84879 * 12 11 10 14 14 N 1.34772 * 119.99764 * 30.84301 * 12 11 10 15 15 C 1.36876 * 119.99573 * 186.02114 * 14 12 11 16 16 H 1.07990 * 120.00004 * 12.72714 * 15 14 12 17 17 C 1.39056 * 119.99648 * 192.72992 * 15 14 12 18 18 N 1.31368 * 119.99652 * 325.25925 * 17 15 14 19 19 Si 1.86795 * 120.00062 * 145.26254 * 17 15 14 20 20 H 1.48498 * 109.47277 * 59.99490 * 19 17 15 21 21 H 1.48501 * 109.47120 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46806 * 299.99710 * 19 17 15 23 23 C 1.46504 * 120.00318 * 6.02330 * 14 12 11 24 24 C 1.50706 * 109.46850 * 250.17832 * 23 14 12 25 25 O 1.20827 * 120.00114 * 359.97438 * 24 23 14 26 26 O 1.34223 * 119.99720 * 180.02562 * 24 23 14 27 27 C 1.38426 * 119.98287 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46685 * 299.99655 * 1 2 3 30 30 H 1.08998 * 109.47512 * 59.99506 * 1 2 3 31 31 H 1.08997 * 109.46730 * 60.00413 * 5 3 2 32 32 H 1.09004 * 109.47199 * 300.00482 * 5 3 2 33 33 H 1.07992 * 119.87587 * 359.97438 * 8 7 6 34 34 H 1.07996 * 119.89646 * 180.02562 * 9 8 7 35 35 H 1.07994 * 120.02701 * 180.29554 * 10 9 8 36 36 H 0.96997 * 119.99688 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.47276 * 130.17527 * 23 14 12 38 38 H 1.09002 * 109.46523 * 10.17028 * 23 14 12 39 39 H 0.96696 * 117.00393 * 179.97438 * 26 24 23 40 40 H 1.08000 * 120.10325 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 0.0001 7 6 5.3077 2.8937 -0.0008 8 6 6.2098 1.8378 -0.0029 9 6 7.5703 2.0840 -0.0044 10 6 8.0412 3.3810 -0.0096 11 6 7.1420 4.4494 -0.0021 12 6 7.6422 5.8395 -0.0018 13 8 7.0005 6.7164 0.5438 14 7 8.8098 6.1357 -0.6062 15 6 9.3345 7.3955 -0.5012 16 1 8.9329 8.0891 0.2226 17 6 10.3845 7.7823 -1.3267 18 7 11.2992 6.9078 -1.6793 19 14 10.4944 9.5453 -1.9342 20 1 10.5946 10.4641 -0.7719 21 1 11.6964 9.6991 -2.7925 22 1 9.2791 9.8741 -2.7217 23 6 9.5175 5.1092 -1.3755 24 6 10.7709 4.7065 -0.6419 25 8 11.0451 5.2242 0.4148 26 8 11.5830 3.7736 -1.1630 27 6 5.7687 4.1989 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7811 -0.8909 32 1 3.9565 0.7806 0.8891 33 1 5.8473 0.8205 -0.0034 34 1 8.2667 1.2586 -0.0065 35 1 9.1045 3.5699 -0.0156 36 1 12.0315 7.1775 -2.2554 37 1 9.7818 5.5071 -2.3552 38 1 8.8731 4.2387 -1.4986 39 1 12.3753 3.5486 -0.6563 40 1 5.0681 5.0208 0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737620626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:32 Heat of formation + Delta-G solvation = -171.020357 kcal Electronic energy + Delta-G solvation = -28931.978391 eV Core-core repulsion = 24486.838239 eV Total energy + Delta-G solvation = -4445.140152 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95671 -40.25262 -39.42353 -38.30774 -37.04012 -36.50183 -35.32211 -34.45376 -32.19008 -31.12090 -30.44248 -29.30826 -27.75769 -27.21466 -25.43411 -23.10549 -22.31544 -21.50808 -21.04284 -19.70723 -18.43208 -17.45081 -17.23837 -17.23701 -17.11501 -16.94482 -16.47973 -15.76067 -15.72633 -15.56455 -14.97436 -14.78529 -14.31686 -14.29123 -13.85558 -13.65419 -13.63365 -13.25145 -13.06713 -12.77441 -12.50618 -12.37187 -12.05638 -11.92536 -11.83707 -11.36745 -11.20806 -11.15277 -11.03823 -10.73723 -10.65853 -10.54868 -10.34170 -10.33700 -9.49304 -8.97221 -8.84694 -8.58080 -8.20012 -8.08490 -6.74793 -3.87589 1.20411 1.56564 1.80108 1.81944 3.10521 3.19521 3.24114 3.34233 3.42007 3.52459 3.91343 4.10858 4.25024 4.28873 4.58937 4.60629 4.63911 4.72249 4.81618 4.91887 4.94867 5.04407 5.13588 5.32741 5.46647 5.58946 5.69950 5.83087 5.91320 6.15032 6.31974 6.41126 6.51215 6.53042 6.69093 6.75380 7.30238 7.36957 7.39749 7.54436 7.86730 8.23771 8.94789 9.04870 9.17859 9.72543 10.35182 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002680 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.679983 B =10445.234649 C =11447.894738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.462 3.538 4 O -0.480 6.480 5 C 0.070 3.930 6 O -0.295 6.295 7 C 0.118 3.882 8 C -0.207 4.207 9 C -0.083 4.083 10 C -0.143 4.143 11 C -0.055 4.055 12 C 0.475 3.525 13 O -0.572 6.572 14 N -0.412 5.412 15 C -0.300 4.300 16 H 0.115 0.885 17 C 0.043 3.957 18 N -0.855 5.855 19 Si 0.923 3.077 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.118 3.882 24 C 0.498 3.502 25 O -0.499 6.499 26 O -0.536 6.536 27 C -0.101 4.101 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.277 0.723 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.392 0.608 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.735 -18.036 -1.770 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.365 6.365 5 C -0.006 4.006 6 O -0.209 6.209 7 C 0.074 3.926 8 C -0.227 4.227 9 C -0.101 4.101 10 C -0.162 4.162 11 C -0.059 4.059 12 C 0.265 3.735 13 O -0.457 6.457 14 N -0.129 5.129 15 C -0.426 4.426 16 H 0.132 0.868 17 C -0.162 4.162 18 N -0.493 5.493 19 Si 0.748 3.252 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.008 4.008 24 C 0.338 3.662 25 O -0.384 6.384 26 O -0.347 6.347 27 C -0.121 4.121 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.248 0.752 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.521 -16.860 -1.540 19.933 hybrid contribution 0.938 0.391 -0.016 1.016 sum -9.583 -16.469 -1.556 19.118 Atomic orbital electron populations 1.23332 0.75364 1.03958 1.02964 1.86438 1.24038 1.32487 1.84520 1.23065 0.91121 0.81902 0.73649 1.90749 1.66631 1.36138 1.42950 1.21812 0.88621 0.84735 1.05481 1.86087 1.21271 1.23917 1.89606 1.18732 0.80862 0.94088 0.98919 1.21205 0.94068 0.97777 1.09607 1.20813 0.94531 0.96583 0.98212 1.21670 1.00187 0.92254 1.02093 1.20078 0.92685 0.94724 0.98375 1.17597 0.83422 0.87121 0.85316 1.90644 1.58268 1.47969 1.48769 1.43509 1.16424 1.09697 1.43249 1.19613 1.16224 0.87359 1.19447 0.86787 1.25271 0.93861 1.00603 0.96498 1.69680 1.09458 1.36919 1.33273 0.86044 0.77665 0.82199 0.79287 1.19491 1.20980 1.19498 1.21579 0.89158 0.92955 0.97058 1.23212 0.84857 0.74468 0.83644 1.90621 1.73093 1.50575 1.24132 1.84506 1.37135 1.57172 1.55871 1.20394 0.94845 0.94209 1.02603 0.87696 0.91592 0.91592 0.87514 0.87561 0.85488 0.85349 0.85218 0.91149 0.86632 0.88373 0.75209 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.07 10.57 -39.25 -0.41 -3.48 16 3 C 0.46 5.03 8.03 36.01 0.29 5.32 16 4 O -0.48 -7.12 16.25 -25.48 -0.41 -7.54 16 5 C 0.07 0.66 5.33 36.01 0.19 0.85 16 6 O -0.29 -4.18 9.67 -39.40 -0.38 -4.57 16 7 C 0.12 1.77 6.68 -39.28 -0.26 1.51 16 8 C -0.21 -2.54 9.03 -39.34 -0.36 -2.90 16 9 C -0.08 -1.11 10.03 -39.66 -0.40 -1.51 16 10 C -0.14 -2.47 7.37 -39.15 -0.29 -2.76 16 11 C -0.05 -1.10 5.38 -104.98 -0.56 -1.67 16 12 C 0.47 11.84 7.36 -12.38 -0.09 11.75 16 13 O -0.57 -16.11 16.38 5.29 0.09 -16.02 16 14 N -0.41 -10.40 2.41 -117.20 -0.28 -10.68 16 15 C -0.30 -8.23 8.45 -15.00 -0.13 -8.35 16 16 H 0.11 3.33 7.47 -52.49 -0.39 2.94 16 17 C 0.04 1.10 5.04 -17.45 -0.09 1.01 16 18 N -0.86 -21.41 8.44 55.50 0.47 -20.94 16 19 Si 0.92 20.18 29.67 -169.99 -5.04 15.14 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C 0.12 2.55 4.80 -5.19 -0.02 2.53 16 24 C 0.50 10.87 4.05 36.01 0.15 11.01 16 25 O -0.50 -12.87 15.97 -18.75 -0.30 -13.17 16 26 O -0.54 -9.37 13.42 -39.24 -0.53 -9.90 16 27 C -0.10 -1.85 9.54 -39.01 -0.37 -2.22 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.11 0.71 7.65 -51.93 -0.40 0.31 16 32 H 0.11 0.73 7.66 -51.93 -0.40 0.33 16 33 H 0.13 1.05 6.28 -52.49 -0.33 0.72 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 2.37 4.00 -52.49 -0.21 2.16 16 36 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.12 2.57 6.69 -51.93 -0.35 2.22 16 38 H 0.10 1.83 4.38 -51.93 -0.23 1.60 16 39 H 0.39 5.26 9.10 45.56 0.41 5.67 16 40 H 0.14 2.71 7.94 -52.49 -0.42 2.30 16 LS Contribution 347.67 15.07 5.24 5.24 Total: -1.00 -35.92 347.67 -5.57 -41.49 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -3.13 Total: 8.54 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: -0.88 Total: 15.88 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.19 Total: -31.62 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -1.95 Total: -54.67 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.04 Total: 15.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.92 -5.57 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737620626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.528 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds