Wall clock time and date at job start Tue Mar 31 2020 20:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99885 * 2 1 4 4 O 1.20834 * 120.00357 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00180 * 180.02562 * 3 2 1 6 6 O 1.42902 * 109.47399 * 180.02562 * 5 3 2 7 7 C 1.35906 * 117.00005 * 180.02562 * 6 5 3 8 8 C 1.38877 * 119.98024 * 0.02562 * 7 6 5 9 9 C 1.38261 * 120.25094 * 179.97438 * 8 7 6 10 10 C 1.37988 * 120.21356 * 359.72191 * 9 8 7 11 11 C 1.39643 * 119.95657 * 0.53426 * 10 9 8 12 12 C 1.47739 * 120.12530 * 179.73960 * 11 10 9 13 13 O 1.21587 * 119.99961 * 210.84879 * 12 11 10 14 14 N 1.34772 * 119.99764 * 30.84301 * 12 11 10 15 15 C 1.36876 * 119.99573 * 186.02114 * 14 12 11 16 16 H 1.07990 * 120.00004 * 12.72714 * 15 14 12 17 17 C 1.39056 * 119.99648 * 192.72992 * 15 14 12 18 18 N 1.31368 * 119.99652 * 325.25925 * 17 15 14 19 19 Si 1.86795 * 120.00062 * 145.26254 * 17 15 14 20 20 H 1.48498 * 109.47277 * 59.99490 * 19 17 15 21 21 H 1.48501 * 109.47120 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46806 * 299.99710 * 19 17 15 23 23 C 1.46504 * 120.00318 * 6.02330 * 14 12 11 24 24 C 1.50706 * 109.46850 * 250.17832 * 23 14 12 25 25 O 1.20827 * 120.00114 * 359.97438 * 24 23 14 26 26 O 1.34223 * 119.99720 * 180.02562 * 24 23 14 27 27 C 1.38426 * 119.98287 * 180.02562 * 7 6 5 28 28 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46685 * 299.99655 * 1 2 3 30 30 H 1.08998 * 109.47512 * 59.99506 * 1 2 3 31 31 H 1.08997 * 109.46730 * 60.00413 * 5 3 2 32 32 H 1.09004 * 109.47199 * 300.00482 * 5 3 2 33 33 H 1.07992 * 119.87587 * 359.97438 * 8 7 6 34 34 H 1.07996 * 119.89646 * 180.02562 * 9 8 7 35 35 H 1.07994 * 120.02701 * 180.29554 * 10 9 8 36 36 H 0.96997 * 119.99688 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.47276 * 130.17527 * 23 14 12 38 38 H 1.09002 * 109.46523 * 10.17028 * 23 14 12 39 39 H 0.96696 * 117.00393 * 179.97438 * 26 24 23 40 40 H 1.08000 * 120.10325 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 0.0001 7 6 5.3077 2.8937 -0.0008 8 6 6.2098 1.8378 -0.0029 9 6 7.5703 2.0840 -0.0044 10 6 8.0412 3.3810 -0.0096 11 6 7.1420 4.4494 -0.0021 12 6 7.6422 5.8395 -0.0018 13 8 7.0005 6.7164 0.5438 14 7 8.8098 6.1357 -0.6062 15 6 9.3345 7.3955 -0.5012 16 1 8.9329 8.0891 0.2226 17 6 10.3845 7.7823 -1.3267 18 7 11.2992 6.9078 -1.6793 19 14 10.4944 9.5453 -1.9342 20 1 10.5946 10.4641 -0.7719 21 1 11.6964 9.6991 -2.7925 22 1 9.2791 9.8741 -2.7217 23 6 9.5175 5.1092 -1.3755 24 6 10.7709 4.7065 -0.6419 25 8 11.0451 5.2242 0.4148 26 8 11.5830 3.7736 -1.1630 27 6 5.7687 4.1989 0.0003 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9557 0.7811 -0.8909 32 1 3.9565 0.7806 0.8891 33 1 5.8473 0.8205 -0.0034 34 1 8.2667 1.2586 -0.0065 35 1 9.1045 3.5699 -0.0156 36 1 12.0315 7.1775 -2.2554 37 1 9.7818 5.5071 -2.3552 38 1 8.8731 4.2387 -1.4986 39 1 12.3753 3.5486 -0.6563 40 1 5.0681 5.0208 0.0024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737620626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:31 Heat of formation + Delta-G solvation = -196.974454 kcal Electronic energy + Delta-G solvation = -28933.103845 eV Core-core repulsion = 24486.838239 eV Total energy + Delta-G solvation = -4446.265606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95098 -41.59894 -40.74926 -39.94105 -38.22473 -37.46589 -37.10347 -36.26646 -34.06611 -32.26389 -31.70796 -30.32717 -29.39944 -27.88588 -27.24230 -24.50816 -23.51204 -22.82342 -22.35564 -21.14504 -19.57374 -19.04640 -18.74270 -18.40954 -18.05133 -18.00473 -17.91142 -17.30516 -17.05464 -16.59113 -16.53778 -16.23854 -15.94689 -15.92511 -15.27086 -14.87940 -14.60249 -14.48976 -14.42438 -13.99479 -13.84097 -13.70700 -13.60197 -13.32311 -13.02783 -12.93395 -12.49950 -12.41326 -12.20618 -12.15293 -12.06837 -11.94195 -11.87082 -11.57507 -11.33812 -10.89302 -10.64076 -10.12613 -9.98421 -9.29880 -8.68351 -5.91161 -0.09830 0.34904 1.00583 1.06138 1.32624 1.39140 1.49394 1.73173 1.89240 2.14998 2.44402 2.47150 2.70797 2.83586 3.16401 3.56375 3.69011 3.82907 4.02528 4.07158 4.08524 4.14592 4.25630 4.30315 4.32515 4.32740 4.51360 4.71816 4.72105 4.89174 4.91972 5.15722 5.21922 5.30174 5.37352 5.42963 5.56433 5.90687 6.03229 6.26249 6.29368 6.60331 6.98466 7.18654 7.50723 7.82199 8.40580 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.020304 B = 0.002680 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.679983 B =10445.234649 C =11447.894738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.464 3.536 4 O -0.532 6.532 5 C 0.060 3.940 6 O -0.322 6.322 7 C 0.129 3.871 8 C -0.175 4.175 9 C -0.063 4.063 10 C -0.153 4.153 11 C -0.082 4.082 12 C 0.462 3.538 13 O -0.626 6.626 14 N -0.423 5.423 15 C -0.349 4.349 16 H 0.075 0.925 17 C 0.020 3.980 18 N -0.859 5.859 19 Si 0.982 3.018 20 H -0.278 1.278 21 H -0.263 1.263 22 H -0.272 1.272 23 C 0.118 3.882 24 C 0.510 3.490 25 O -0.545 6.545 26 O -0.516 6.516 27 C -0.125 4.125 28 H 0.141 0.859 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.118 0.882 36 H 0.285 0.715 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.414 0.586 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -22.806 -2.964 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.307 3.693 4 O -0.421 6.421 5 C -0.015 4.015 6 O -0.236 6.236 7 C 0.084 3.916 8 C -0.193 4.193 9 C -0.081 4.081 10 C -0.172 4.172 11 C -0.085 4.085 12 C 0.254 3.746 13 O -0.515 6.515 14 N -0.139 5.139 15 C -0.475 4.475 16 H 0.093 0.907 17 C -0.185 4.185 18 N -0.496 5.496 19 Si 0.805 3.195 20 H -0.203 1.203 21 H -0.187 1.187 22 H -0.197 1.197 23 C -0.006 4.006 24 C 0.352 3.648 25 O -0.434 6.434 26 O -0.329 6.329 27 C -0.145 4.145 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.204 0.796 34 H 0.194 0.806 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.273 0.727 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.993 -21.719 -2.771 24.068 hybrid contribution 0.653 1.603 0.374 1.771 sum -9.340 -20.116 -2.397 22.307 Atomic orbital electron populations 1.23629 0.74069 1.06155 1.02564 1.86442 1.25288 1.31044 1.83774 1.23511 0.91908 0.81725 0.72110 1.90745 1.67850 1.37890 1.45642 1.22336 0.87552 0.82566 1.09039 1.86052 1.20695 1.27516 1.89357 1.18615 0.81945 0.93232 0.97763 1.21793 0.92889 0.99436 1.05230 1.21305 0.95928 0.95651 0.95179 1.21617 0.98989 0.93350 1.03286 1.19661 0.93918 0.92549 1.02375 1.18536 0.82935 0.89028 0.84112 1.90568 1.59661 1.50321 1.50938 1.43562 1.16846 1.09977 1.43523 1.19346 1.18107 0.88721 1.21359 0.90671 1.25903 0.92855 1.04172 0.95617 1.69697 1.09116 1.38073 1.32706 0.85189 0.78128 0.77687 0.78492 1.20299 1.18681 1.19685 1.21649 0.89862 0.93207 0.95877 1.23041 0.84884 0.74181 0.82656 1.90612 1.74144 1.52573 1.26093 1.84422 1.37670 1.55432 1.55359 1.20224 0.93805 0.95715 1.04792 0.84147 0.92113 0.92037 0.83534 0.83836 0.79599 0.80582 0.86456 0.90436 0.87421 0.85162 0.72671 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -4.92 10.57 -51.38 -0.54 -5.46 16 3 C 0.46 9.02 8.03 71.24 0.57 9.60 16 4 O -0.53 -15.67 16.25 28.37 0.46 -15.21 16 5 C 0.06 0.84 5.33 71.24 0.38 1.22 16 6 O -0.32 -8.42 9.67 -73.41 -0.71 -9.13 16 7 C 0.13 3.55 6.68 22.47 0.15 3.70 16 8 C -0.18 -3.23 9.03 22.43 0.20 -3.03 16 9 C -0.06 -1.34 10.03 22.22 0.22 -1.12 16 10 C -0.15 -5.04 7.37 22.55 0.17 -4.88 16 11 C -0.08 -3.40 5.38 -20.10 -0.11 -3.51 16 12 C 0.46 24.85 7.36 86.76 0.64 25.49 16 13 O -0.63 -38.88 16.38 -3.99 -0.07 -38.94 16 14 N -0.42 -22.69 2.41 -642.99 -1.55 -24.23 16 15 C -0.35 -20.49 8.45 84.10 0.71 -19.78 16 16 H 0.08 4.86 7.47 -2.92 -0.02 4.84 16 17 C 0.02 1.04 5.04 84.96 0.43 1.47 16 18 N -0.86 -43.31 8.44 21.68 0.18 -43.13 16 19 Si 0.98 42.61 29.67 68.60 2.04 44.65 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.12 5.22 4.80 85.63 0.41 5.63 16 24 C 0.51 22.15 4.05 71.24 0.29 22.44 16 25 O -0.55 -28.71 15.97 21.96 0.35 -28.36 16 26 O -0.52 -16.90 13.42 -51.35 -0.69 -17.58 16 27 C -0.13 -4.75 9.54 22.64 0.22 -4.54 16 28 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 30 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.15 0.96 7.65 -2.39 -0.02 0.94 16 32 H 0.14 1.02 7.66 -2.39 -0.02 1.00 16 33 H 0.19 1.32 6.28 -2.91 -0.02 1.31 16 34 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.12 4.16 4.00 -2.91 -0.01 4.15 16 36 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 37 H 0.11 4.86 6.69 -2.39 -0.02 4.84 16 38 H 0.13 4.80 4.38 -2.39 -0.01 4.79 16 39 H 0.41 9.98 9.10 -74.06 -0.67 9.31 16 40 H 0.11 4.73 7.94 -2.91 -0.02 4.71 16 Total: -1.00 -88.71 347.67 5.41 -83.31 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.46 Total: 19.91 kcal Atomic # 6 Polarization: 28.71 SS G_CDS: 5.47 Total: 34.19 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -1.36 Total: -67.37 kcal Atomic # 8 Polarization: -113.49 SS G_CDS: -1.20 Total: -114.69 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.04 Total: 44.65 kcal Total: -88.71 5.41 -83.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737620626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.668 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds