Wall clock time and date at job start Tue Mar 31 2020 20:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99697 * 2 1 4 4 O 1.20825 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99623 * 179.97438 * 3 2 1 6 6 O 1.42893 * 109.46968 * 179.97438 * 5 3 2 7 7 C 1.35714 * 117.00331 * 179.97438 * 6 5 3 8 8 C 1.39016 * 119.90330 * 0.25300 * 7 6 5 9 9 C 1.37685 * 120.09122 * 180.20549 * 8 7 6 10 10 C 1.39786 * 119.90894 * 359.51978 * 9 8 7 11 11 C 1.47492 * 120.09590 * 180.27270 * 10 9 8 12 12 O 1.21623 * 120.00176 * 322.60120 * 11 10 9 13 13 N 1.34773 * 120.00233 * 142.60510 * 11 10 9 14 14 C 1.36909 * 120.00212 * 186.35437 * 13 11 10 15 15 H 1.07989 * 120.00095 * 346.30235 * 14 13 11 16 16 C 1.39022 * 119.99833 * 166.30107 * 14 13 11 17 17 N 1.31383 * 120.00421 * 34.45409 * 16 14 13 18 18 Si 1.86799 * 119.99885 * 214.45333 * 16 14 13 19 19 H 1.48509 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47279 * 120.00081 * 18 16 14 21 21 H 1.48492 * 109.47571 * 240.00156 * 18 16 14 22 22 C 1.46503 * 119.99994 * 6.35097 * 13 11 10 23 23 C 1.50706 * 109.46875 * 106.81016 * 22 13 11 24 24 O 1.20824 * 119.99942 * 0.02562 * 23 22 13 25 25 O 1.34234 * 119.99732 * 180.02562 * 23 22 13 26 26 C 1.39802 * 119.81472 * 0.25097 * 10 9 8 27 27 C 1.37685 * 119.89985 * 0.02562 * 26 10 9 28 28 H 1.09004 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47601 * 300.00258 * 1 2 3 30 30 H 1.08998 * 109.46794 * 60.00607 * 1 2 3 31 31 H 1.08993 * 109.47332 * 59.99579 * 5 3 2 32 32 H 1.09007 * 109.46775 * 299.99847 * 5 3 2 33 33 H 1.07998 * 119.94922 * 359.97438 * 8 7 6 34 34 H 1.08007 * 120.04136 * 179.79356 * 9 8 7 35 35 H 0.96998 * 119.99916 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47492 * 226.80640 * 22 13 11 37 37 H 1.09002 * 109.47276 * 346.81285 * 22 13 11 38 38 H 0.96700 * 116.99619 * 179.97438 * 25 23 22 39 39 H 1.07998 * 120.05334 * 180.02562 * 26 10 9 40 40 H 1.08001 * 119.95361 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6452 -0.0001 7 6 5.3057 2.8933 0.0008 8 6 6.2074 1.8352 -0.0029 9 6 7.5619 2.0824 0.0023 10 6 8.0300 3.3996 0.0012 11 6 9.4800 3.6691 0.0007 12 8 10.2310 2.9581 0.6408 13 7 9.9730 4.7034 -0.7090 14 6 11.3268 4.8769 -0.8159 15 1 11.9941 4.3324 -0.1643 16 6 11.8426 5.7539 -1.7633 17 7 11.1884 6.8521 -2.0668 18 14 13.4657 5.3709 -2.6047 19 1 13.9982 4.0834 -2.0905 20 1 13.2511 5.2671 -4.0705 21 1 14.4381 6.4571 -2.3226 22 6 9.0601 5.6420 -1.3662 23 6 9.0577 6.9490 -0.6159 24 8 9.7481 7.0828 0.3666 25 8 8.2886 7.9645 -1.0392 26 6 7.1198 4.4607 0.0001 27 6 5.7670 4.2046 0.0007 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.9564 0.7806 -0.8890 32 1 3.9557 0.7809 0.8909 33 1 5.8448 0.8179 -0.0061 34 1 8.2617 1.2597 0.0028 35 1 11.5485 7.4641 -2.7276 36 1 9.3897 5.8122 -2.3911 37 1 8.0530 5.2251 -1.3728 38 1 8.3203 8.7829 -0.5252 39 1 7.4772 5.4798 -0.0012 40 1 5.0631 5.0237 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737622614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:36 Heat of formation + Delta-G solvation = -170.646127 kcal Electronic energy + Delta-G solvation = -28833.739073 eV Core-core repulsion = 24388.615149 eV Total energy + Delta-G solvation = -4445.123924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01412 -40.27305 -39.45116 -38.37225 -37.05422 -36.51741 -35.30373 -34.50949 -32.18617 -31.18956 -30.49965 -29.36223 -27.77498 -27.34001 -25.21425 -22.94218 -22.71645 -21.36170 -21.03099 -19.59880 -18.67592 -17.69298 -17.33318 -17.28880 -17.12940 -17.03622 -16.44756 -15.78881 -15.60196 -15.48711 -15.19895 -14.68389 -14.28096 -14.06911 -13.90102 -13.69884 -13.53134 -13.46412 -13.12043 -12.81810 -12.55068 -12.41981 -12.19869 -11.95163 -11.78257 -11.48869 -11.25230 -11.14706 -11.02722 -10.79671 -10.62044 -10.51733 -10.34864 -10.30148 -9.54610 -8.92219 -8.85137 -8.69076 -8.16264 -8.05221 -6.69273 -3.85673 1.26209 1.47622 1.74513 1.77259 3.06805 3.21190 3.29245 3.30196 3.38962 3.49275 3.91835 4.05373 4.23960 4.26705 4.57804 4.60262 4.60769 4.68480 4.77742 4.89981 4.93749 5.03972 5.10104 5.32100 5.44260 5.51124 5.70243 5.81820 5.86807 6.13437 6.27352 6.36563 6.46795 6.58139 6.70578 6.71093 7.23423 7.33098 7.41362 7.50875 7.90894 8.26692 8.97952 9.02431 9.19604 9.75036 10.40466 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002583 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.202528 B =10836.026974 C =11567.732392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.068 3.932 6 O -0.296 6.296 7 C 0.124 3.876 8 C -0.212 4.212 9 C -0.036 4.036 10 C -0.125 4.125 11 C 0.483 3.517 12 O -0.575 6.575 13 N -0.416 5.416 14 C -0.302 4.302 15 H 0.114 0.886 16 C 0.041 3.959 17 N -0.861 5.861 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.282 1.282 22 C 0.109 3.891 23 C 0.493 3.507 24 O -0.500 6.500 25 O -0.533 6.533 26 C -0.074 4.074 27 C -0.144 4.144 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.275 0.725 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.393 0.607 39 H 0.138 0.862 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.137 -8.985 -1.025 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.368 6.368 5 C -0.008 4.008 6 O -0.209 6.209 7 C 0.079 3.921 8 C -0.230 4.230 9 C -0.055 4.055 10 C -0.129 4.129 11 C 0.273 3.727 12 O -0.460 6.460 13 N -0.134 5.134 14 C -0.429 4.429 15 H 0.132 0.868 16 C -0.164 4.164 17 N -0.499 5.499 18 Si 0.743 3.257 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.016 4.016 23 C 0.333 3.667 24 O -0.385 6.385 25 O -0.344 6.344 26 C -0.093 4.093 27 C -0.163 4.163 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.120 0.880 38 H 0.249 0.751 39 H 0.155 0.845 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.913 -9.043 -0.786 20.082 hybrid contribution 0.692 0.715 -0.172 1.010 sum -17.221 -8.329 -0.958 19.153 Atomic orbital electron populations 1.23335 0.75323 1.04027 1.02924 1.86447 1.24064 1.32436 1.84427 1.23056 0.91096 0.81900 0.73521 1.90732 1.66667 1.36171 1.43197 1.21845 0.88618 0.84608 1.05727 1.86005 1.21441 1.24145 1.89330 1.19031 0.80718 0.94357 0.97962 1.21118 0.93790 0.97982 1.10141 1.20949 0.94298 0.96139 0.94155 1.20228 0.94736 0.93772 1.04152 1.17599 0.86474 0.84325 0.84292 1.90635 1.59187 1.51428 1.44796 1.43500 1.06238 1.20062 1.43592 1.19690 0.80581 1.25493 1.17117 0.86809 1.25264 1.00315 0.93633 0.97155 1.69850 1.41672 1.07203 1.31207 0.86014 0.81183 0.79336 0.79120 1.18777 1.20288 1.20865 1.21722 0.95570 0.85060 0.99240 1.23464 0.75259 0.85590 0.82343 1.90627 1.38268 1.82284 1.27362 1.84519 1.65019 1.25264 1.59634 1.21511 0.91822 0.99495 0.96482 1.20293 0.95446 0.94028 1.06537 0.87654 0.91598 0.91591 0.87368 0.87396 0.85174 0.84657 0.91431 0.85792 0.87969 0.75096 0.84475 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -2.91 10.57 -39.26 -0.41 -3.32 16 3 C 0.46 4.71 8.03 36.01 0.29 5.00 16 4 O -0.48 -6.63 16.25 -25.48 -0.41 -7.05 16 5 C 0.07 0.60 5.33 36.01 0.19 0.79 16 6 O -0.30 -3.77 9.66 -38.80 -0.37 -4.14 16 7 C 0.12 1.69 6.70 -39.01 -0.26 1.43 16 8 C -0.21 -2.71 9.01 -39.49 -0.36 -3.07 16 9 C -0.04 -0.58 9.61 -39.21 -0.38 -0.96 16 10 C -0.13 -2.42 5.43 -104.96 -0.57 -2.99 16 11 C 0.48 11.78 7.31 -12.49 -0.09 11.68 16 12 O -0.58 -15.88 16.49 5.26 0.09 -15.79 16 13 N -0.42 -10.46 2.35 -117.29 -0.28 -10.74 16 14 C -0.30 -8.27 8.60 -14.99 -0.13 -8.40 16 15 H 0.11 3.33 7.41 -52.49 -0.39 2.94 16 16 C 0.04 1.05 5.06 -17.45 -0.09 0.96 16 17 N -0.86 -21.74 8.80 55.50 0.49 -21.25 16 18 Si 0.92 20.05 29.67 -169.99 -5.04 15.01 16 19 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.11 2.38 4.83 -5.19 -0.03 2.36 16 23 C 0.49 10.96 4.75 36.01 0.17 11.13 16 24 O -0.50 -13.12 16.39 -18.75 -0.31 -13.43 16 25 O -0.53 -9.56 13.42 -39.27 -0.53 -10.09 16 26 C -0.07 -1.28 7.35 -39.20 -0.29 -1.56 16 27 C -0.14 -2.13 9.97 -39.50 -0.39 -2.52 16 28 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.11 0.69 7.64 -51.93 -0.40 0.29 16 32 H 0.11 0.70 7.66 -51.93 -0.40 0.31 16 33 H 0.13 1.17 6.28 -52.49 -0.33 0.84 16 34 H 0.14 2.11 8.03 -52.48 -0.42 1.69 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.12 2.79 6.39 -51.93 -0.33 2.46 16 37 H 0.10 1.91 3.83 -51.93 -0.20 1.71 16 38 H 0.39 5.42 9.10 45.56 0.41 5.83 16 39 H 0.14 2.46 4.37 -52.49 -0.23 2.23 16 40 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 348.94 15.07 5.26 5.26 Total: -1.00 -36.03 348.94 -5.49 -41.52 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.10 Total: 8.89 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -0.86 Total: 15.13 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.21 Total: -31.99 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -1.95 Total: -53.82 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.04 Total: 15.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.03 -5.49 -41.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737622614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.124 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds