Wall clock time and date at job start Tue Mar 31 2020 20:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99697 * 2 1 4 4 O 1.20825 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99623 * 179.97438 * 3 2 1 6 6 O 1.42893 * 109.46968 * 179.97438 * 5 3 2 7 7 C 1.35714 * 117.00331 * 179.97438 * 6 5 3 8 8 C 1.39016 * 119.90330 * 0.25300 * 7 6 5 9 9 C 1.37685 * 120.09122 * 180.20549 * 8 7 6 10 10 C 1.39786 * 119.90894 * 359.51978 * 9 8 7 11 11 C 1.47492 * 120.09590 * 180.27270 * 10 9 8 12 12 O 1.21623 * 120.00176 * 322.60120 * 11 10 9 13 13 N 1.34773 * 120.00233 * 142.60510 * 11 10 9 14 14 C 1.36909 * 120.00212 * 186.35437 * 13 11 10 15 15 H 1.07989 * 120.00095 * 346.30235 * 14 13 11 16 16 C 1.39022 * 119.99833 * 166.30107 * 14 13 11 17 17 N 1.31383 * 120.00421 * 34.45409 * 16 14 13 18 18 Si 1.86799 * 119.99885 * 214.45333 * 16 14 13 19 19 H 1.48509 * 109.47019 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47279 * 120.00081 * 18 16 14 21 21 H 1.48492 * 109.47571 * 240.00156 * 18 16 14 22 22 C 1.46503 * 119.99994 * 6.35097 * 13 11 10 23 23 C 1.50706 * 109.46875 * 106.81016 * 22 13 11 24 24 O 1.20824 * 119.99942 * 0.02562 * 23 22 13 25 25 O 1.34234 * 119.99732 * 180.02562 * 23 22 13 26 26 C 1.39802 * 119.81472 * 0.25097 * 10 9 8 27 27 C 1.37685 * 119.89985 * 0.02562 * 26 10 9 28 28 H 1.09004 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47601 * 300.00258 * 1 2 3 30 30 H 1.08998 * 109.46794 * 60.00607 * 1 2 3 31 31 H 1.08993 * 109.47332 * 59.99579 * 5 3 2 32 32 H 1.09007 * 109.46775 * 299.99847 * 5 3 2 33 33 H 1.07998 * 119.94922 * 359.97438 * 8 7 6 34 34 H 1.08007 * 120.04136 * 179.79356 * 9 8 7 35 35 H 0.96998 * 119.99916 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47492 * 226.80640 * 22 13 11 37 37 H 1.09002 * 109.47276 * 346.81285 * 22 13 11 38 38 H 0.96700 * 116.99619 * 179.97438 * 25 23 22 39 39 H 1.07998 * 120.05334 * 180.02562 * 26 10 9 40 40 H 1.08001 * 119.95361 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6452 -0.0001 7 6 5.3057 2.8933 0.0008 8 6 6.2074 1.8352 -0.0029 9 6 7.5619 2.0824 0.0023 10 6 8.0300 3.3996 0.0012 11 6 9.4800 3.6691 0.0007 12 8 10.2310 2.9581 0.6408 13 7 9.9730 4.7034 -0.7090 14 6 11.3268 4.8769 -0.8159 15 1 11.9941 4.3324 -0.1643 16 6 11.8426 5.7539 -1.7633 17 7 11.1884 6.8521 -2.0668 18 14 13.4657 5.3709 -2.6047 19 1 13.9982 4.0834 -2.0905 20 1 13.2511 5.2671 -4.0705 21 1 14.4381 6.4571 -2.3226 22 6 9.0601 5.6420 -1.3662 23 6 9.0577 6.9490 -0.6159 24 8 9.7481 7.0828 0.3666 25 8 8.2886 7.9645 -1.0392 26 6 7.1198 4.4607 0.0001 27 6 5.7670 4.2046 0.0007 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.9564 0.7806 -0.8890 32 1 3.9557 0.7809 0.8909 33 1 5.8448 0.8179 -0.0061 34 1 8.2617 1.2597 0.0028 35 1 11.5485 7.4641 -2.7276 36 1 9.3897 5.8122 -2.3911 37 1 8.0530 5.2251 -1.3728 38 1 8.3203 8.7829 -0.5252 39 1 7.4772 5.4798 -0.0012 40 1 5.0631 5.0237 -0.0006 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737622614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:35 Heat of formation + Delta-G solvation = -195.868015 kcal Electronic energy + Delta-G solvation = -28834.832776 eV Core-core repulsion = 24388.615149 eV Total energy + Delta-G solvation = -4446.217627 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94608 -41.58281 -40.77987 -39.98662 -38.20448 -37.45005 -37.08172 -36.35227 -34.02790 -32.32471 -31.72454 -30.32010 -29.52010 -27.95171 -26.99923 -24.13415 -24.03338 -22.81016 -22.10825 -21.20454 -19.62305 -19.07559 -18.84474 -18.61948 -18.19183 -18.00030 -17.76440 -17.33530 -16.95333 -16.65425 -16.54265 -16.27666 -15.94406 -15.51958 -15.14964 -15.09986 -14.68965 -14.43298 -14.36103 -13.99159 -13.82465 -13.72200 -13.63740 -13.39308 -13.11099 -12.96111 -12.61735 -12.40844 -12.21065 -12.13137 -12.05771 -11.86986 -11.84971 -11.55362 -11.41330 -10.84138 -10.57847 -10.14002 -9.99299 -9.28510 -8.61992 -5.87807 -0.01913 0.28574 1.01207 1.06389 1.32359 1.40805 1.55687 1.65921 1.87385 2.19831 2.45336 2.47874 2.69431 2.82605 3.17998 3.55573 3.71677 3.79470 3.88027 4.05717 4.05822 4.16195 4.25421 4.30824 4.34354 4.36364 4.50742 4.73173 4.76926 4.85119 4.98382 5.07984 5.20226 5.23385 5.41594 5.44766 5.52015 5.94415 5.95194 6.21949 6.33136 6.60098 7.03338 7.24257 7.42524 7.87048 8.46956 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.021317 B = 0.002583 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.202528 B =10836.026974 C =11567.732392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.467 3.533 4 O -0.528 6.528 5 C 0.057 3.943 6 O -0.309 6.309 7 C 0.144 3.856 8 C -0.190 4.190 9 C -0.037 4.037 10 C -0.158 4.158 11 C 0.475 3.525 12 O -0.624 6.624 13 N -0.430 5.430 14 C -0.347 4.347 15 H 0.077 0.923 16 C 0.015 3.985 17 N -0.870 5.870 18 Si 0.982 3.018 19 H -0.275 1.275 20 H -0.258 1.258 21 H -0.279 1.279 22 C 0.111 3.889 23 C 0.502 3.498 24 O -0.548 6.548 25 O -0.516 6.516 26 C -0.078 4.078 27 C -0.145 4.145 28 H 0.138 0.862 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.179 0.821 34 H 0.136 0.864 35 H 0.282 0.718 36 H 0.116 0.884 37 H 0.135 0.865 38 H 0.414 0.586 39 H 0.125 0.875 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 -10.344 -2.194 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.310 3.690 4 O -0.416 6.416 5 C -0.018 4.018 6 O -0.222 6.222 7 C 0.099 3.901 8 C -0.208 4.208 9 C -0.056 4.056 10 C -0.162 4.162 11 C 0.267 3.733 12 O -0.513 6.513 13 N -0.147 5.147 14 C -0.474 4.474 15 H 0.095 0.905 16 C -0.190 4.190 17 N -0.508 5.508 18 Si 0.805 3.195 19 H -0.200 1.200 20 H -0.182 1.182 21 H -0.205 1.205 22 C -0.013 4.013 23 C 0.344 3.656 24 O -0.437 6.437 25 O -0.328 6.328 26 C -0.096 4.096 27 C -0.163 4.163 28 H 0.156 0.844 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.197 0.803 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.274 0.726 39 H 0.142 0.858 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.500 -10.379 -1.988 23.063 hybrid contribution 1.192 1.071 0.239 1.621 sum -19.307 -9.307 -1.750 21.505 Atomic orbital electron populations 1.23627 0.73960 1.06097 1.02697 1.86451 1.25395 1.31265 1.83760 1.23380 0.91680 0.81743 0.72184 1.90726 1.67711 1.37623 1.45557 1.22311 0.87816 0.82839 1.08802 1.85994 1.20396 1.27067 1.88762 1.19037 0.81471 0.94036 0.95595 1.21460 0.91772 1.00171 1.07441 1.21054 0.96019 0.94658 0.93888 1.19936 0.91713 0.96024 1.08519 1.18502 0.88634 0.83297 0.82858 1.90569 1.61210 1.52811 1.46669 1.43609 1.06023 1.21065 1.44010 1.19447 0.81779 1.27134 1.19006 0.90491 1.25941 1.03498 0.92886 0.96633 1.69879 1.42826 1.07035 1.31021 0.85096 0.77334 0.78335 0.78733 1.20005 1.18215 1.20473 1.21797 0.96565 0.84803 0.98143 1.23463 0.74467 0.86270 0.81361 1.90611 1.40510 1.83171 1.29410 1.84445 1.63500 1.25578 1.59303 1.21284 0.92653 0.98259 0.97452 1.20420 0.94424 0.95615 1.05833 0.84447 0.91904 0.91852 0.84023 0.84254 0.80335 0.84659 0.90776 0.86611 0.84787 0.72650 0.85782 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.62 10.57 -51.42 -0.54 -5.16 16 3 C 0.47 8.07 8.03 71.24 0.57 8.64 16 4 O -0.53 -13.57 16.25 28.40 0.46 -13.11 16 5 C 0.06 0.73 5.33 71.24 0.38 1.11 16 6 O -0.31 -6.61 9.66 -71.27 -0.69 -7.30 16 7 C 0.14 3.39 6.70 22.64 0.15 3.54 16 8 C -0.19 -4.08 9.01 22.33 0.20 -3.88 16 9 C -0.04 -1.13 9.61 22.51 0.22 -0.92 16 10 C -0.16 -6.17 5.43 -20.09 -0.11 -6.28 16 11 C 0.47 24.37 7.31 86.68 0.63 25.01 16 12 O -0.62 -36.70 16.49 -4.11 -0.07 -36.77 16 13 N -0.43 -22.69 2.35 -643.25 -1.51 -24.20 16 14 C -0.35 -20.10 8.60 84.09 0.72 -19.38 16 15 H 0.08 4.90 7.41 -2.92 -0.02 4.88 16 16 C 0.01 0.76 5.06 84.95 0.43 1.19 16 17 N -0.87 -44.42 8.80 21.68 0.19 -44.23 16 18 Si 0.98 42.06 29.67 68.60 2.04 44.10 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 22 C 0.11 4.96 4.83 85.63 0.41 5.37 16 23 C 0.50 22.63 4.75 71.24 0.34 22.97 16 24 O -0.55 -29.72 16.39 21.97 0.36 -29.36 16 25 O -0.52 -17.99 13.42 -51.45 -0.69 -18.69 16 26 C -0.08 -2.62 7.35 22.52 0.17 -2.46 16 27 C -0.14 -3.91 9.97 22.32 0.22 -3.69 16 28 H 0.14 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.14 0.95 7.64 -2.39 -0.02 0.93 16 32 H 0.14 0.99 7.66 -2.38 -0.02 0.97 16 33 H 0.18 2.06 6.28 -2.91 -0.02 2.04 16 34 H 0.14 4.11 8.03 -2.91 -0.02 4.09 16 35 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.12 5.30 6.39 -2.39 -0.02 5.28 16 37 H 0.14 5.03 3.83 -2.39 -0.01 5.02 16 38 H 0.41 10.85 9.10 -74.06 -0.67 10.18 16 39 H 0.12 4.47 4.37 -2.91 -0.01 4.46 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -84.19 348.94 5.54 -78.65 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.46 Total: 23.38 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 5.54 Total: 32.68 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -1.32 Total: -68.43 kcal Atomic # 8 Polarization: -109.21 SS G_CDS: -1.17 Total: -110.38 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.04 Total: 44.10 kcal Total: -84.19 5.54 -78.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737622614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.214 kcal (2) G-P(sol) polarization free energy of solvation -84.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds