Wall clock time and date at job start Tue Mar 31 2020 20:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35666 * 117.00146 * 2 1 4 4 C 1.39285 * 119.83167 * 0.02562 * 3 2 1 5 5 C 1.36424 * 120.40371 * 179.97438 * 4 3 2 6 6 C 1.40175 * 120.06079 * 0.02562 * 5 4 3 7 7 C 1.46487 * 120.16416 * 180.27611 * 6 5 4 8 8 O 1.21339 * 119.99818 * 179.72134 * 7 6 5 9 9 C 1.40648 * 119.66630 * 359.97438 * 6 5 4 10 10 O 1.35605 * 120.19851 * 180.02562 * 9 6 5 11 11 C 1.42890 * 117.00111 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47580 * 180.02562 * 11 10 9 13 13 O 1.21302 * 119.99663 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00254 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99655 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00174 * 322.20296 * 15 14 12 17 17 C 1.38950 * 119.99818 * 142.21302 * 15 14 12 18 18 N 1.31411 * 120.00279 * 158.60224 * 17 15 14 19 19 Si 1.86801 * 119.99833 * 338.59265 * 17 15 14 20 20 H 1.48506 * 109.47003 * 95.99756 * 19 17 15 21 21 H 1.48492 * 109.47432 * 215.99740 * 19 17 15 22 22 H 1.48503 * 109.47365 * 336.00084 * 19 17 15 23 23 C 1.46495 * 119.99964 * 0.02562 * 14 12 11 24 24 C 1.50706 * 109.46965 * 83.23587 * 23 14 12 25 25 O 1.20820 * 119.99950 * 0.02562 * 24 23 14 26 26 O 1.34225 * 119.99731 * 179.97438 * 24 23 14 27 27 C 1.38425 * 119.60087 * 0.02562 * 9 6 5 28 28 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00280 * 1 2 3 30 30 H 1.08997 * 109.46905 * 60.00229 * 1 2 3 31 31 H 1.07999 * 119.79794 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.96773 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.00325 * 359.72104 * 7 6 5 34 34 H 1.09003 * 109.47152 * 300.00089 * 11 10 9 35 35 H 1.09000 * 109.47406 * 59.99732 * 11 10 9 36 36 H 0.96995 * 120.00072 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.47027 * 203.23196 * 23 14 12 38 38 H 1.08996 * 109.47430 * 323.23439 * 23 14 12 39 39 H 0.96703 * 117.00383 * 179.97438 * 26 24 23 40 40 H 1.08002 * 120.03153 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2829 2.3747 0.0005 5 6 1.8901 3.5964 0.0011 6 6 3.2891 3.6851 0.0005 7 6 3.9435 4.9957 0.0072 8 8 5.1546 5.0690 0.0118 9 6 4.0612 2.5096 0.0000 10 8 5.4153 2.5829 0.0000 11 6 6.1319 1.3467 -0.0011 12 6 7.6131 1.6245 -0.0003 13 8 8.0154 2.7688 0.0016 14 7 8.4906 0.6016 -0.0006 15 6 9.8381 0.8545 0.0006 16 1 10.2330 1.6810 -0.5715 17 6 10.6958 0.0473 0.7378 18 7 11.9735 -0.0031 0.4347 19 14 10.0326 -0.9662 2.1600 20 1 9.7427 -2.3455 1.6921 21 1 11.0430 -1.0144 3.2471 22 1 8.7846 -0.3445 2.6713 23 6 8.0047 -0.7804 -0.0024 24 6 7.6813 -1.1974 -1.4140 25 8 7.8408 -0.4201 -2.3251 26 8 7.2169 -2.4327 -1.6591 27 6 3.4306 1.2773 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2048 2.3112 0.0005 32 1 1.2925 4.4958 0.0019 33 1 3.3479 5.8967 0.0080 34 1 5.8696 0.7738 0.8884 35 1 5.8695 0.7754 -0.8916 36 1 12.5722 -0.5664 0.9496 37 1 8.7748 -1.4368 0.4030 38 1 7.1071 -0.8507 0.6120 39 1 7.0232 -2.6541 -2.5803 40 1 4.0167 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737982206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:00 Heat of formation + Delta-G solvation = -169.498813 kcal Electronic energy + Delta-G solvation = -29482.165215 eV Core-core repulsion = 25037.091042 eV Total energy + Delta-G solvation = -4445.074173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87282 -40.11228 -39.40294 -38.63302 -37.86548 -36.50598 -35.78633 -34.84114 -32.26853 -31.31281 -30.37317 -28.51163 -28.08960 -27.76404 -24.73747 -24.20410 -22.51912 -21.82301 -21.03636 -19.27821 -18.93145 -17.87264 -17.40420 -17.10606 -16.85690 -16.51597 -16.39482 -16.18184 -15.88773 -15.71186 -15.55437 -14.98525 -14.96381 -14.55422 -14.11351 -14.07792 -13.53424 -13.47958 -13.03777 -12.85134 -12.74871 -12.63683 -12.61825 -12.37050 -12.18849 -11.76739 -11.54016 -11.28790 -11.21254 -11.01800 -10.77602 -10.70264 -10.20685 -10.03685 -9.46925 -9.23336 -8.84427 -8.69738 -8.27625 -8.01466 -6.49379 -4.10396 0.66610 1.20555 2.55989 2.56367 2.76682 2.89749 2.96477 3.07961 3.13859 3.19639 3.63751 3.68948 4.00721 4.24429 4.33014 4.40854 4.67759 4.71762 4.76614 4.78908 4.92712 5.06676 5.09924 5.14743 5.21013 5.28640 5.30300 5.35653 5.41513 5.59497 5.73132 5.85694 5.98434 6.08092 6.27390 6.78147 6.95155 7.22924 7.41907 7.76999 8.09384 8.23625 8.35576 8.80894 9.13456 9.51708 10.62136 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003847 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.288954 B = 7276.882697 C = 8486.069087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.198 3.802 4 C -0.264 4.264 5 C 0.007 3.993 6 C -0.262 4.262 7 C 0.367 3.633 8 O -0.425 6.425 9 C 0.229 3.771 10 O -0.245 6.245 11 C 0.032 3.968 12 C 0.483 3.517 13 O -0.510 6.510 14 N -0.449 5.449 15 C -0.313 4.313 16 H 0.112 0.888 17 C 0.061 3.939 18 N -0.853 5.853 19 Si 0.860 3.140 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.258 1.258 23 C 0.094 3.906 24 C 0.453 3.547 25 O -0.490 6.490 26 O -0.524 6.524 27 C -0.267 4.267 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.277 0.723 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.646 -3.300 0.629 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.152 3.848 4 C -0.283 4.283 5 C -0.011 4.011 6 C -0.264 4.264 7 C 0.223 3.777 8 O -0.296 6.296 9 C 0.179 3.821 10 O -0.154 6.154 11 C -0.047 4.047 12 C 0.270 3.730 13 O -0.386 6.386 14 N -0.174 5.174 15 C -0.440 4.440 16 H 0.129 0.871 17 C -0.146 4.146 18 N -0.489 5.489 19 Si 0.686 3.314 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.182 1.182 23 C -0.032 4.032 24 C 0.292 3.708 25 O -0.376 6.376 26 O -0.336 6.336 27 C -0.286 4.286 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.121 0.879 39 H 0.260 0.740 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.172 -2.385 0.821 24.304 hybrid contribution -0.832 -1.295 0.048 1.540 sum -25.005 -3.680 0.869 25.289 Atomic orbital electron populations 1.23137 0.77835 1.04240 1.01701 1.86049 1.21881 1.27008 1.87438 1.18950 0.91424 0.84272 0.90192 1.20798 1.00251 0.92105 1.15153 1.20681 0.92133 0.97666 0.90643 1.20372 0.93524 0.94577 1.17952 1.23567 0.90237 0.90848 0.73033 1.90756 1.16901 1.89535 1.32385 1.19127 0.83364 0.92337 0.87312 1.86436 1.13319 1.30652 1.84949 1.22902 0.93481 0.85857 1.02485 1.19556 0.85372 0.86281 0.81820 1.90685 1.78769 1.20032 1.49134 1.43238 1.06655 1.00628 1.66833 1.19066 0.77628 1.17957 1.29322 0.87080 1.25382 0.95105 0.97165 0.96931 1.69735 1.04005 1.37344 1.37768 0.87196 0.80523 0.79790 0.83926 1.19659 1.20363 1.18196 1.21704 1.02417 0.88958 0.90144 1.24644 0.73263 0.79019 0.93864 1.90742 1.47452 1.52932 1.46428 1.84573 1.78017 1.34557 1.36460 1.20450 0.92758 0.97892 1.17496 0.88017 0.92261 0.92264 0.84905 0.84204 0.88724 0.89609 0.90048 0.91255 0.86343 0.87946 0.73957 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.80 101.05 0.99 1.13 16 2 O -0.31 -3.15 10.48 -18.70 -0.20 -3.34 16 3 C 0.20 2.24 6.69 -39.01 -0.26 1.98 16 4 C -0.26 -2.37 8.96 -39.85 -0.36 -2.73 16 5 C 0.01 0.07 9.73 -39.51 -0.38 -0.32 16 6 C -0.26 -3.48 5.88 -104.94 -0.62 -4.09 16 7 C 0.37 5.06 11.42 34.05 0.39 5.45 16 8 O -0.43 -8.56 15.98 -16.43 -0.26 -8.82 16 9 C 0.23 3.64 6.70 -38.60 -0.26 3.38 16 10 O -0.25 -4.93 7.74 -48.79 -0.38 -5.31 16 11 C 0.03 0.60 3.84 36.01 0.14 0.74 16 12 C 0.48 11.95 7.45 -10.99 -0.08 11.86 16 13 O -0.51 -15.01 16.37 -14.37 -0.24 -15.24 16 14 N -0.45 -11.01 1.74 -116.09 -0.20 -11.21 16 15 C -0.31 -8.95 9.36 -14.93 -0.14 -9.09 16 16 H 0.11 3.63 7.92 -52.49 -0.42 3.21 16 17 C 0.06 1.66 5.28 -17.47 -0.09 1.56 16 18 N -0.85 -24.37 13.96 55.50 0.77 -23.60 16 19 Si 0.86 19.14 24.97 -169.99 -4.25 14.89 16 20 H -0.27 -5.44 6.72 56.52 0.38 -5.06 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C 0.09 1.84 4.33 -5.19 -0.02 1.81 16 24 C 0.45 8.40 7.63 36.01 0.27 8.67 16 25 O -0.49 -10.91 17.00 -18.75 -0.32 -11.23 16 26 O -0.52 -7.25 13.42 -39.25 -0.53 -7.78 16 27 C -0.27 -3.61 8.97 -39.33 -0.35 -3.96 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.26 7.64 -51.93 -0.40 -0.14 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.14 16 31 H 0.13 0.79 6.26 -52.49 -0.33 0.46 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.10 0.81 8.06 -52.48 -0.42 0.38 16 34 H 0.09 1.32 6.94 -51.93 -0.36 0.96 16 35 H 0.08 1.40 6.96 -51.93 -0.36 1.04 16 36 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.12 2.38 3.61 -51.93 -0.19 2.19 16 38 H 0.10 1.55 6.73 -51.93 -0.35 1.20 16 39 H 0.40 3.74 9.10 45.56 0.41 4.15 16 40 H 0.14 1.80 6.30 -52.49 -0.33 1.47 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -39.86 350.32 -4.22 -44.09 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.14 Total: 5.90 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: -0.78 Total: 16.39 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.57 Total: -34.81 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -1.92 Total: -51.73 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.25 Total: 14.89 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.86 -4.22 -44.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737982206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.412 kcal (2) G-P(sol) polarization free energy of solvation -39.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds