Wall clock time and date at job start Tue Mar 31 2020 20:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35666 * 117.00146 * 2 1 4 4 C 1.39285 * 119.83167 * 0.02562 * 3 2 1 5 5 C 1.36424 * 120.40371 * 179.97438 * 4 3 2 6 6 C 1.40175 * 120.06079 * 0.02562 * 5 4 3 7 7 C 1.46487 * 120.16416 * 180.27611 * 6 5 4 8 8 O 1.21339 * 119.99818 * 179.72134 * 7 6 5 9 9 C 1.40648 * 119.66630 * 359.97438 * 6 5 4 10 10 O 1.35605 * 120.19851 * 180.02562 * 9 6 5 11 11 C 1.42890 * 117.00111 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47580 * 180.02562 * 11 10 9 13 13 O 1.21302 * 119.99663 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00254 * 179.97438 * 12 11 10 15 15 C 1.37100 * 119.99655 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00174 * 322.20296 * 15 14 12 17 17 C 1.38950 * 119.99818 * 142.21302 * 15 14 12 18 18 N 1.31411 * 120.00279 * 158.60224 * 17 15 14 19 19 Si 1.86801 * 119.99833 * 338.59265 * 17 15 14 20 20 H 1.48506 * 109.47003 * 95.99756 * 19 17 15 21 21 H 1.48492 * 109.47432 * 215.99740 * 19 17 15 22 22 H 1.48503 * 109.47365 * 336.00084 * 19 17 15 23 23 C 1.46495 * 119.99964 * 0.02562 * 14 12 11 24 24 C 1.50706 * 109.46965 * 83.23587 * 23 14 12 25 25 O 1.20820 * 119.99950 * 0.02562 * 24 23 14 26 26 O 1.34225 * 119.99731 * 179.97438 * 24 23 14 27 27 C 1.38425 * 119.60087 * 0.02562 * 9 6 5 28 28 H 1.08998 * 109.46823 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47180 * 300.00280 * 1 2 3 30 30 H 1.08997 * 109.46905 * 60.00229 * 1 2 3 31 31 H 1.07999 * 119.79794 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.96773 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.00325 * 359.72104 * 7 6 5 34 34 H 1.09003 * 109.47152 * 300.00089 * 11 10 9 35 35 H 1.09000 * 109.47406 * 59.99732 * 11 10 9 36 36 H 0.96995 * 120.00072 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.47027 * 203.23196 * 23 14 12 38 38 H 1.08996 * 109.47430 * 323.23439 * 23 14 12 39 39 H 0.96703 * 117.00383 * 179.97438 * 26 24 23 40 40 H 1.08002 * 120.03153 * 179.97438 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2829 2.3747 0.0005 5 6 1.8901 3.5964 0.0011 6 6 3.2891 3.6851 0.0005 7 6 3.9435 4.9957 0.0072 8 8 5.1546 5.0690 0.0118 9 6 4.0612 2.5096 0.0000 10 8 5.4153 2.5829 0.0000 11 6 6.1319 1.3467 -0.0011 12 6 7.6131 1.6245 -0.0003 13 8 8.0154 2.7688 0.0016 14 7 8.4906 0.6016 -0.0006 15 6 9.8381 0.8545 0.0006 16 1 10.2330 1.6810 -0.5715 17 6 10.6958 0.0473 0.7378 18 7 11.9735 -0.0031 0.4347 19 14 10.0326 -0.9662 2.1600 20 1 9.7427 -2.3455 1.6921 21 1 11.0430 -1.0144 3.2471 22 1 8.7846 -0.3445 2.6713 23 6 8.0047 -0.7804 -0.0024 24 6 7.6813 -1.1974 -1.4140 25 8 7.8408 -0.4201 -2.3251 26 8 7.2169 -2.4327 -1.6591 27 6 3.4306 1.2773 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2048 2.3112 0.0005 32 1 1.2925 4.4958 0.0019 33 1 3.3479 5.8967 0.0080 34 1 5.8696 0.7738 0.8884 35 1 5.8695 0.7754 -0.8916 36 1 12.5722 -0.5664 0.9496 37 1 8.7748 -1.4368 0.4030 38 1 7.1071 -0.8507 0.6120 39 1 7.0232 -2.6541 -2.5803 40 1 4.0167 0.3702 -0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737982206.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:59 Heat of formation + Delta-G solvation = -201.482772 kcal Electronic energy + Delta-G solvation = -29483.552144 eV Core-core repulsion = 25037.091042 eV Total energy + Delta-G solvation = -4446.461101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98463 -41.51723 -40.53808 -40.01287 -39.24079 -37.49676 -37.22938 -36.69358 -34.33640 -32.16062 -31.44517 -30.04412 -29.66915 -28.30729 -26.60724 -25.08866 -23.62155 -23.27484 -21.99760 -21.00674 -19.87258 -19.31848 -19.27537 -18.31182 -18.11009 -17.79387 -17.59474 -17.34335 -17.12781 -17.00816 -16.67977 -16.60984 -15.95211 -15.81989 -15.53524 -15.25274 -14.99014 -14.80945 -14.54284 -14.30077 -14.18995 -13.81649 -13.70962 -13.45833 -13.19835 -13.17026 -12.93188 -12.63931 -12.53491 -12.36644 -12.00586 -11.95755 -11.77389 -11.66985 -11.17164 -10.65415 -10.54554 -10.03250 -9.74488 -9.19298 -8.58553 -6.28849 -0.23535 0.34212 1.07664 1.15366 1.29085 1.44040 1.46690 1.60944 1.63834 2.03777 2.13837 2.22368 2.65395 2.76507 2.88625 3.38687 3.44909 3.62878 3.72137 3.83574 3.88976 4.00600 4.07629 4.11973 4.30809 4.36360 4.43802 4.46808 4.48182 4.56989 4.81264 5.08590 5.17346 5.25698 5.34751 5.49989 5.54980 5.91887 6.10197 6.31900 6.37993 6.74398 6.79288 6.92710 7.05509 7.57067 8.58807 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003847 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.288954 B = 7276.882697 C = 8486.069087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.327 6.327 3 C 0.200 3.800 4 C -0.252 4.252 5 C 0.029 3.971 6 C -0.288 4.288 7 C 0.371 3.629 8 O -0.505 6.505 9 C 0.190 3.810 10 O -0.288 6.288 11 C 0.049 3.951 12 C 0.468 3.532 13 O -0.580 6.580 14 N -0.454 5.454 15 C -0.342 4.342 16 H 0.037 0.963 17 C 0.013 3.987 18 N -0.903 5.903 19 Si 0.936 3.064 20 H -0.220 1.220 21 H -0.278 1.278 22 H -0.242 1.242 23 C 0.083 3.917 24 C 0.467 3.533 25 O -0.539 6.539 26 O -0.499 6.499 27 C -0.283 4.283 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.174 0.826 32 H 0.190 0.810 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.285 0.715 37 H 0.121 0.879 38 H 0.157 0.843 39 H 0.428 0.572 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.359 -6.186 2.178 32.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.153 3.847 4 C -0.271 4.271 5 C 0.011 3.989 6 C -0.290 4.290 7 C 0.233 3.767 8 O -0.381 6.381 9 C 0.142 3.858 10 O -0.199 6.199 11 C -0.029 4.029 12 C 0.258 3.742 13 O -0.461 6.461 14 N -0.178 5.178 15 C -0.470 4.470 16 H 0.055 0.945 17 C -0.190 4.190 18 N -0.539 5.539 19 Si 0.755 3.245 20 H -0.144 1.144 21 H -0.204 1.204 22 H -0.165 1.165 23 C -0.041 4.041 24 C 0.308 3.692 25 O -0.428 6.428 26 O -0.312 6.312 27 C -0.302 4.302 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.192 0.808 32 H 0.208 0.792 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.175 0.825 39 H 0.290 0.710 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.970 -5.360 2.339 30.536 hybrid contribution 0.735 -0.455 -0.551 1.025 sum -29.235 -5.815 1.787 29.862 Atomic orbital electron populations 1.23520 0.75282 1.06057 1.03204 1.86037 1.24478 1.26527 1.86898 1.19089 0.90861 0.85688 0.89084 1.21295 1.02143 0.90977 1.12652 1.21199 0.90203 0.99843 0.87644 1.20744 0.95367 0.93627 1.19309 1.24566 0.89361 0.93084 0.69675 1.90757 1.20324 1.90513 1.36523 1.19586 0.81739 0.94520 0.89923 1.86386 1.16031 1.30938 1.86531 1.22658 0.89014 0.86416 1.04840 1.20642 0.88095 0.85389 0.80110 1.90630 1.80516 1.22849 1.52117 1.43195 1.05141 1.03041 1.66388 1.18560 0.80374 1.17406 1.30628 0.94464 1.26305 0.94974 0.98503 0.99255 1.69861 1.05953 1.38953 1.39164 0.86028 0.80185 0.79940 0.78343 1.14427 1.20415 1.16535 1.21926 1.04579 0.85681 0.91899 1.24182 0.72461 0.79744 0.92824 1.90757 1.49743 1.54679 1.47610 1.84473 1.76699 1.31357 1.38676 1.20481 0.94241 0.96955 1.18554 0.86333 0.90594 0.90753 0.80838 0.79249 0.82751 0.85729 0.88550 0.90464 0.86135 0.82523 0.71030 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.80 113.37 1.11 1.19 16 2 O -0.33 -5.35 10.48 -89.83 -0.94 -6.29 16 3 C 0.20 3.84 6.69 22.64 0.15 3.99 16 4 C -0.25 -3.25 8.96 22.10 0.20 -3.05 16 5 C 0.03 0.39 9.73 22.32 0.22 0.61 16 6 C -0.29 -7.27 5.88 -20.07 -0.12 -7.39 16 7 C 0.37 10.16 11.42 69.97 0.80 10.96 16 8 O -0.51 -21.82 15.98 17.76 0.28 -21.54 16 9 C 0.19 6.07 6.70 22.90 0.15 6.22 16 10 O -0.29 -12.24 7.74 -60.20 -0.47 -12.71 16 11 C 0.05 1.90 3.84 71.24 0.27 2.17 16 12 C 0.47 24.64 7.45 87.66 0.65 25.29 16 13 O -0.58 -37.63 16.37 15.94 0.26 -37.36 16 14 N -0.45 -23.18 1.74 -639.59 -1.11 -24.29 16 15 C -0.34 -21.11 9.36 84.04 0.79 -20.33 16 16 H 0.04 2.76 7.92 -2.91 -0.02 2.74 16 17 C 0.01 0.72 5.28 84.93 0.45 1.17 16 18 N -0.90 -54.21 13.96 21.66 0.30 -53.91 16 19 Si 0.94 38.74 24.97 68.60 1.71 40.45 16 20 H -0.22 -7.45 6.72 99.48 0.67 -6.78 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.24 -9.40 7.11 99.48 0.71 -8.69 16 23 C 0.08 3.11 4.33 85.64 0.37 3.48 16 24 C 0.47 16.63 7.63 71.24 0.54 17.18 16 25 O -0.54 -24.50 17.00 21.98 0.37 -24.12 16 26 O -0.50 -11.97 13.42 -51.37 -0.69 -12.66 16 27 C -0.28 -7.24 8.97 22.43 0.20 -7.04 16 28 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.24 7.64 -2.39 -0.02 0.22 16 30 H 0.07 0.25 7.65 -2.39 -0.02 0.24 16 31 H 0.17 0.83 6.26 -2.91 -0.02 0.81 16 32 H 0.19 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.13 3.67 6.94 -2.39 -0.02 3.65 16 35 H 0.10 3.34 6.96 -2.39 -0.02 3.33 16 36 H 0.29 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.12 4.45 3.61 -2.38 -0.01 4.45 16 38 H 0.16 4.07 6.73 -2.39 -0.02 4.06 16 39 H 0.43 6.39 9.10 -74.05 -0.67 5.71 16 40 H 0.14 3.39 6.30 -2.91 -0.02 3.37 16 Total: -1.00 -103.89 350.32 5.93 -97.96 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.42 Total: 20.01 kcal Atomic # 6 Polarization: 28.67 SS G_CDS: 5.79 Total: 34.46 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -0.81 Total: -78.20 kcal Atomic # 8 Polarization: -113.50 SS G_CDS: -1.18 Total: -114.68 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 1.71 Total: 40.45 kcal Total: -103.89 5.93 -97.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737982206.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.527 kcal (2) G-P(sol) polarization free energy of solvation -103.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds