Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99948 * 2 1 4 4 C 1.53004 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47239 * 64.99913 * 4 3 2 6 6 C 1.46506 * 119.99671 * 270.00400 * 5 4 3 7 7 C 1.50702 * 109.46485 * 274.78447 * 6 5 4 8 8 H 1.07995 * 120.00610 * 355.08503 * 7 6 5 9 9 C 1.37880 * 119.99732 * 175.08854 * 7 6 5 10 10 N 1.31508 * 120.00150 * 185.05382 * 9 7 6 11 11 Si 1.86809 * 119.99927 * 5.04766 * 9 7 6 12 12 H 1.48498 * 109.46645 * 94.92062 * 11 9 7 13 13 H 1.48500 * 109.47024 * 214.91960 * 11 9 7 14 14 H 1.48498 * 109.47109 * 334.92351 * 11 9 7 15 15 C 1.34774 * 120.00492 * 89.99546 * 5 4 3 16 16 O 1.21798 * 119.99557 * 5.20883 * 15 5 4 17 17 C 1.41657 * 120.00340 * 185.20315 * 15 5 4 18 18 C 1.38719 * 126.80382 * 260.26069 * 17 15 5 19 19 Cl 1.73603 * 125.91539 * 0.02562 * 18 17 15 20 20 N 1.32412 * 108.16841 * 180.02562 * 18 17 15 21 21 C 1.33207 * 109.83748 * 0.02562 * 20 18 17 22 22 C 1.40651 * 131.78179 * 179.97438 * 21 20 18 23 23 C 1.36291 * 119.39191 * 180.02562 * 22 21 20 24 24 C 1.40177 * 119.60203 * 0.02562 * 23 22 21 25 25 C 1.35259 * 120.12675 * 359.97438 * 24 23 22 26 26 N 1.35951 * 120.63605 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46669 * 300.00281 * 1 2 3 28 28 H 1.08998 * 109.46525 * 60.00288 * 1 2 3 29 29 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47382 * 59.99596 * 3 2 1 31 31 H 1.09000 * 109.46938 * 299.99952 * 3 2 1 32 32 H 1.09001 * 109.46894 * 304.99607 * 4 3 2 33 33 H 1.09001 * 109.47042 * 184.99659 * 4 3 2 34 34 H 1.09000 * 109.47456 * 34.78520 * 6 5 4 35 35 H 1.09002 * 109.46651 * 154.78952 * 6 5 4 36 36 H 0.96999 * 120.00488 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.30744 * 359.97438 * 22 21 20 38 38 H 1.07994 * 120.20075 * 180.27293 * 23 22 21 39 39 H 1.08000 * 119.93450 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.68353 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2508 6 6 4.1063 -0.8927 -1.3401 7 6 5.4619 -1.3085 -0.8297 8 1 6.1866 -0.5587 -0.5489 9 6 5.7769 -2.6465 -0.7212 10 7 6.9202 -3.0113 -0.1835 11 14 4.5795 -3.9410 -1.3380 12 1 4.9423 -4.3301 -2.7244 13 1 4.6431 -5.1341 -0.4562 14 1 3.2016 -3.3876 -1.3236 15 6 4.2634 1.3327 -2.3200 16 8 4.2476 2.5464 -2.2191 17 6 4.5831 0.7293 -3.5611 18 6 5.8513 0.5361 -4.0890 19 17 7.3477 0.9952 -3.3381 20 7 5.7229 -0.0592 -5.2648 21 6 4.4334 -0.2630 -5.5297 22 6 3.7843 -0.8494 -6.6312 23 6 2.4238 -0.9292 -6.6410 24 6 1.6928 -0.4263 -5.5559 25 6 2.3353 0.1341 -4.5058 26 7 3.6921 0.2175 -4.4881 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8428 33 1 3.9785 2.1765 0.0902 34 1 3.3305 -1.3641 -0.7369 35 1 3.9981 -1.2039 -2.3792 36 1 7.1418 -3.9526 -0.1068 37 1 4.3587 -1.2321 -7.4618 38 1 1.9122 -1.3807 -7.4781 39 1 0.6145 -0.4871 -5.5579 40 1 1.7650 0.5196 -3.6736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748318763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -0.937080 kcal Electronic energy + Delta-G solvation = -28041.957294 eV Core-core repulsion = 24077.194422 eV Total energy + Delta-G solvation = -3964.762872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.07225 -40.91123 -38.83800 -38.53551 -37.57547 -36.81304 -34.87357 -34.60805 -32.02069 -31.27115 -30.35631 -29.25004 -27.16963 -25.56352 -24.67881 -24.43390 -23.74721 -23.01861 -20.81294 -19.11956 -18.97567 -18.18028 -18.09340 -17.69310 -17.26375 -17.04038 -16.73957 -16.59232 -16.16239 -16.00744 -15.76752 -15.45545 -15.21151 -14.79795 -14.42180 -13.91918 -13.90680 -13.56650 -13.42837 -13.19686 -12.92078 -12.85668 -12.76860 -12.61154 -12.48546 -12.27865 -12.12268 -12.09077 -11.94095 -11.72574 -11.60791 -11.16205 -10.79584 -10.60091 -9.85539 -9.60706 -8.99905 -8.30836 -6.34767 -0.34271 -0.07984 0.49625 0.95984 1.29667 1.30450 1.35017 1.40526 1.66882 2.25641 2.29659 2.43283 2.88217 3.03784 3.07640 3.52167 3.54321 3.81136 3.94412 4.07174 4.12507 4.16230 4.36786 4.46946 4.52247 4.54395 4.60544 4.65243 4.66388 4.84093 4.87513 4.91514 4.96045 5.03809 5.14449 5.42440 5.45808 5.52364 5.82151 6.09866 6.26021 6.37373 6.43959 6.68823 6.95199 7.28439 8.85511 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.007835 B = 0.006720 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3572.894851 B = 4165.654813 C = 4891.089019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.060 3.940 4 C 0.109 3.891 5 N -0.568 5.568 6 C 0.237 3.763 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.024 3.976 10 N -0.935 5.935 11 Si 0.926 3.074 12 H -0.278 1.278 13 H -0.275 1.275 14 H -0.237 1.237 15 C 0.602 3.398 16 O -0.569 6.569 17 C -0.116 4.116 18 C 0.154 3.846 19 Cl 0.005 6.995 20 N -0.522 5.522 21 C 0.235 3.765 22 C -0.101 4.101 23 C -0.061 4.061 24 C -0.109 4.109 25 C 0.029 3.971 26 N -0.332 5.332 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.267 0.733 37 H 0.177 0.823 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.211 3.878 -10.261 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.017 4.017 4 C -0.013 4.013 5 N -0.297 5.297 6 C 0.115 3.885 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.175 4.175 10 N -0.575 5.575 11 Si 0.749 3.251 12 H -0.203 1.203 13 H -0.201 1.201 14 H -0.160 1.160 15 C 0.388 3.612 16 O -0.449 6.449 17 C -0.232 4.232 18 C -0.010 4.010 19 Cl 0.034 6.966 20 N -0.244 5.244 21 C -0.006 4.006 22 C -0.121 4.121 23 C -0.084 4.084 24 C -0.128 4.128 25 C -0.094 4.094 26 N -0.004 5.004 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.195 0.805 38 H 0.219 0.781 39 H 0.223 0.777 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.256 4.042 -10.469 21.430 hybrid contribution 0.255 -0.159 0.907 0.955 sum -18.001 3.884 -9.562 20.750 Atomic orbital electron populations 1.22920 0.79591 1.03546 1.00964 1.87980 1.21474 1.28022 1.95556 1.22884 0.92256 0.85010 1.01575 1.21685 0.93796 0.99779 0.86086 1.47969 1.62189 1.08356 1.11149 1.19474 0.96354 0.76355 0.96342 1.21423 0.99201 0.92577 1.43739 0.94412 1.25623 0.96866 1.00485 0.94498 1.70034 1.24918 1.17371 1.45146 0.86036 0.81221 0.79355 0.78476 1.20345 1.20062 1.15969 1.15519 0.77032 0.85706 0.82938 1.90753 1.54176 1.14085 1.85872 1.19234 0.89219 1.18179 0.96606 1.21169 0.86991 1.00358 0.92457 1.98373 1.29328 1.89901 1.79045 1.69981 1.16556 1.22271 1.15623 1.21498 0.85565 1.01401 0.92138 1.20824 0.95928 1.00158 0.95187 1.21782 0.91714 0.95461 0.99486 1.21586 1.03548 0.96648 0.91065 1.22279 0.79393 1.04061 1.03671 1.42538 1.07332 1.36113 1.14402 0.92717 0.93158 0.89050 0.89446 0.93358 0.89650 0.88582 0.92728 0.96712 0.92428 0.80521 0.78149 0.77734 0.81543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -11.97 9.46 -148.98 -1.41 -13.38 16 3 C 0.06 1.65 6.28 71.98 0.45 2.10 16 4 C 0.11 3.89 5.87 86.38 0.51 4.40 16 5 N -0.57 -24.19 2.42 -836.66 -2.02 -26.21 16 6 C 0.24 11.14 3.98 85.63 0.34 11.48 16 7 C -0.53 -30.16 9.93 25.60 0.25 -29.90 16 8 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 9 C 0.02 1.41 5.47 84.66 0.46 1.87 16 10 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 11 Si 0.93 43.25 27.59 68.60 1.89 45.14 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.24 -9.99 6.39 99.48 0.64 -9.35 16 15 C 0.60 26.48 7.02 85.09 0.60 27.07 16 16 O -0.57 -26.34 16.64 -4.66 -0.08 -26.42 16 17 C -0.12 -5.02 4.63 39.07 0.18 -4.84 16 18 C 0.15 7.10 7.77 84.72 0.66 7.76 16 19 Cl 0.01 0.23 29.11 -2.72 -0.08 0.15 16 20 N -0.52 -22.23 11.25 -183.61 -2.07 -24.29 16 21 C 0.23 8.12 7.77 134.00 1.04 9.16 16 22 C -0.10 -2.19 10.10 22.40 0.23 -1.97 16 23 C -0.06 -0.77 10.07 22.29 0.22 -0.55 16 24 C -0.11 -1.50 10.00 22.05 0.22 -1.28 16 25 C 0.03 0.70 10.82 83.37 0.90 1.60 16 26 N -0.33 -11.66 2.70 -344.10 -0.93 -12.59 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 3.20 8.07 -2.39 -0.02 3.18 16 33 H 0.10 3.36 7.35 -2.39 -0.02 3.34 16 34 H 0.05 2.53 5.97 -2.39 -0.01 2.51 16 35 H 0.01 0.72 5.98 -2.39 -0.01 0.70 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.20 0.49 8.06 -2.91 -0.02 0.46 16 39 H 0.21 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.17 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -83.10 361.14 3.92 -79.18 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.00 Total: 7.59 kcal Atomic # 6 Polarization: 21.33 SS G_CDS: 7.32 Total: 28.65 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.72 Total: -120.92 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -1.49 Total: -39.79 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.89 Total: 45.14 kcal Atomic # 17 Polarization: 0.23 SS G_CDS: -0.08 Total: 0.15 kcal Total: -83.10 3.92 -79.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748318763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.242 kcal (2) G-P(sol) polarization free energy of solvation -83.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds