Wall clock time and date at job start Tue Mar 31 2020 19:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48493 * 109.47000 * 269.99511 * 3 2 1 5 5 H 1.48503 * 109.46969 * 29.99563 * 3 2 1 6 6 H 1.48497 * 109.46846 * 149.99693 * 3 2 1 7 7 C 1.38801 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00075 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99803 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46888 * 180.02562 * 10 9 7 12 12 O 1.20830 * 120.00114 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.45197 * 117.00037 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47069 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46947 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46790 * 179.97438 * 16 15 14 18 18 C 1.36319 * 126.27641 * 265.02213 * 17 16 15 19 19 N 1.30144 * 109.97803 * 180.02562 * 18 17 16 20 20 C 1.35471 * 109.44118 * 359.97438 * 19 18 17 21 21 C 1.37201 * 126.28160 * 85.02248 * 17 16 15 22 22 N 1.32888 * 134.91593 * 359.97438 * 21 17 16 23 23 C 1.31647 * 120.63699 * 180.02562 * 22 21 17 24 24 N 1.32044 * 122.46496 * 359.97438 * 23 22 21 25 25 C 1.32907 * 121.19258 * 0.02562 * 24 23 22 26 26 N 1.38384 * 120.77168 * 179.97438 * 25 24 23 27 27 H 0.97002 * 119.99701 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47608 * 60.00279 * 10 9 7 29 29 H 1.09005 * 109.47408 * 299.99779 * 10 9 7 30 30 H 1.08992 * 109.47428 * 60.00099 * 14 13 11 31 31 H 1.09000 * 109.47266 * 299.99327 * 14 13 11 32 32 H 1.08997 * 109.47396 * 59.99185 * 15 14 13 33 33 H 1.09000 * 109.46489 * 299.99756 * 15 14 13 34 34 H 1.08992 * 109.47545 * 60.00056 * 16 15 14 35 35 H 1.09000 * 109.47272 * 299.99209 * 16 15 14 36 36 H 1.07997 * 125.01216 * 0.02562 * 18 17 16 37 37 H 1.08007 * 118.76543 * 180.28328 * 23 22 21 38 38 H 0.96996 * 120.00498 * 0.02562 * 26 25 24 39 39 H 0.96999 * 119.99890 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0863 -2.9847 0.0009 11 6 5.5728 -3.2328 0.0021 12 8 6.3410 -2.3001 0.0025 13 8 6.0435 -4.4899 0.0016 14 6 7.4862 -4.6535 0.0022 15 6 7.8303 -6.1444 0.0008 16 6 9.3506 -6.3169 0.0021 17 7 9.6800 -7.7443 0.0014 18 6 9.9533 -8.5096 1.0960 19 7 10.2042 -9.7335 0.7315 20 6 10.1076 -9.8313 -0.6162 21 6 9.7701 -8.5563 -1.1009 22 7 9.6142 -8.3829 -2.4091 23 6 9.7725 -9.3894 -3.2428 24 7 10.0896 -10.6046 -2.8348 25 6 10.2660 -10.8736 -1.5452 26 7 10.5977 -12.1504 -1.1273 27 1 -0.4850 0.8401 -0.0004 28 1 3.6438 -3.4315 -0.8892 29 1 3.6430 -3.4320 0.8907 30 1 7.9047 -4.1845 0.8926 31 1 7.9056 -4.1835 -0.8874 32 1 7.4118 -6.6131 -0.8897 33 1 7.4109 -6.6148 0.8902 34 1 9.7687 -5.8483 0.8929 35 1 9.7704 -5.8464 -0.8870 36 1 9.9606 -8.1528 2.1153 37 1 9.6430 -9.2135 -4.3005 38 1 10.7044 -12.8615 -1.7782 39 1 10.7242 -12.3341 -0.1833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748869326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:24 Heat of formation + Delta-G solvation = 12.085603 kcal Electronic energy + Delta-G solvation = -24576.988598 eV Core-core repulsion = 20647.126890 eV Total energy + Delta-G solvation = -3929.861708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.93570 -40.23940 -39.67113 -36.81775 -36.18191 -35.25387 -32.52119 -32.47696 -31.94630 -29.86711 -29.65643 -26.60459 -25.69560 -24.62699 -23.93803 -22.52957 -21.32105 -21.02277 -19.00149 -18.80589 -17.98558 -17.43158 -17.16174 -16.77722 -16.70413 -16.40321 -15.76215 -15.25874 -15.08708 -15.03899 -14.66615 -14.43040 -14.36695 -14.06584 -13.46768 -13.12571 -12.99627 -12.84862 -12.47894 -12.36441 -11.99237 -11.78729 -11.58150 -11.35664 -11.07813 -10.81014 -10.77020 -10.60758 -10.43069 -10.23393 -9.90891 -9.70192 -9.44312 -9.08316 -8.65606 -8.33710 -7.05982 -6.36098 -4.10862 0.47866 0.98711 1.77877 2.26909 2.39654 2.45531 2.86015 3.03931 3.27065 3.42625 3.47242 3.56824 3.59841 3.71782 3.96373 4.22294 4.25166 4.36962 4.38312 4.54588 4.65103 4.68997 4.72347 4.86598 5.02656 5.04652 5.25755 5.27730 5.40436 5.57626 5.61640 5.65577 5.91285 6.01041 6.26727 6.44117 6.48499 6.69383 7.16861 7.24198 7.86610 7.94064 7.95537 8.35435 9.08799 10.72902 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.001681 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.013627 B =16652.341030 C =16897.326221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.098 3.902 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.524 4.524 8 H 0.092 0.908 9 S -0.139 6.139 10 C -0.100 4.100 11 C 0.480 3.520 12 O -0.489 6.489 13 O -0.358 6.358 14 C 0.072 3.928 15 C -0.136 4.136 16 C 0.116 3.884 17 N -0.470 5.470 18 C 0.253 3.747 19 N -0.465 5.465 20 C -0.112 4.112 21 C 0.303 3.697 22 N -0.556 5.556 23 C 0.364 3.636 24 N -0.594 5.594 25 C 0.507 3.493 26 N -0.819 5.819 27 H 0.272 0.728 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.224 0.776 37 H 0.205 0.795 38 H 0.410 0.590 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.546 -22.001 0.100 32.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.110 0.890 9 S 0.087 5.913 10 C -0.248 4.248 11 C 0.321 3.679 12 O -0.375 6.375 13 O -0.276 6.276 14 C -0.004 4.004 15 C -0.175 4.175 16 C -0.005 4.005 17 N -0.162 5.162 18 C -0.033 4.033 19 N -0.183 5.183 20 C -0.239 4.239 21 C 0.062 3.938 22 N -0.280 5.280 23 C 0.072 3.928 24 N -0.324 5.324 25 C 0.253 3.747 26 N -0.362 5.362 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.240 0.760 37 H 0.221 0.779 38 H 0.240 0.760 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 24.408 -21.065 -0.255 32.242 hybrid contribution -0.747 0.027 0.467 0.882 sum 23.661 -21.038 0.213 31.662 Atomic orbital electron populations 1.69930 1.05876 1.27896 1.47511 1.24697 0.94465 0.98946 0.93068 0.86743 0.81823 0.83311 0.80001 1.19107 1.19763 1.15991 1.22259 0.87637 0.97788 1.59411 0.89033 1.84795 1.10172 0.98787 1.97569 1.23016 0.89731 1.04620 1.07428 1.23281 0.92026 0.80234 0.72320 1.90670 1.58876 1.43682 1.44244 1.86496 1.24918 1.31325 1.84814 1.22740 0.78794 0.95679 1.03154 1.21879 0.94414 0.95950 1.05214 1.21761 0.96052 0.76942 1.05790 1.45126 1.56108 1.10115 1.04814 1.25415 0.99048 0.85733 0.93137 1.70214 1.20308 1.18130 1.09686 1.19678 1.16677 0.95105 0.92474 1.18748 0.97882 0.88779 0.88398 1.67297 1.24725 1.36193 0.99832 1.24492 0.87862 0.81102 0.99313 1.68052 1.26312 1.24818 1.13228 1.17793 0.85120 0.84707 0.87057 1.42213 1.74697 1.07108 1.12160 0.91790 0.87124 0.87111 0.90801 0.90714 0.89656 0.89906 0.87705 0.88001 0.75999 0.77876 0.75993 0.75038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.92 13.97 55.49 0.78 -25.15 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.15 27.74 -169.99 -4.72 16.43 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 10 C -0.10 -1.91 6.27 36.01 0.23 -1.68 16 11 C 0.48 8.40 7.98 36.01 0.29 8.68 16 12 O -0.49 -9.72 15.61 -18.75 -0.29 -10.01 16 13 O -0.36 -5.09 10.22 -39.26 -0.40 -5.49 16 14 C 0.07 0.73 5.47 37.16 0.20 0.94 16 15 C -0.14 -1.07 5.92 -26.73 -0.16 -1.23 16 16 C 0.12 0.70 6.16 -4.04 -0.02 0.67 16 17 N -0.47 -3.76 2.79 -117.63 -0.33 -4.09 16 18 C 0.25 1.74 12.51 -89.49 -1.12 0.62 16 19 N -0.47 -4.35 11.28 -11.85 -0.13 -4.48 16 20 C -0.11 -1.18 7.17 -84.54 -0.61 -1.78 16 21 C 0.30 3.24 8.05 -155.80 -1.25 1.98 16 22 N -0.56 -6.02 10.47 -13.90 -0.15 -6.16 16 23 C 0.36 3.33 12.25 -92.07 -1.13 2.20 16 24 N -0.59 -5.74 10.45 -13.61 -0.14 -5.88 16 25 C 0.51 4.80 7.87 -154.66 -1.22 3.58 16 26 N -0.82 -4.81 9.05 31.37 0.28 -4.53 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 29 H 0.11 1.96 8.14 -51.91 -0.42 1.54 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 0.32 8.13 -51.93 -0.42 -0.10 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 38 H 0.41 1.61 8.95 -40.82 -0.37 1.24 16 39 H 0.42 1.97 8.85 -40.82 -0.36 1.60 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -36.41 361.62 -10.75 -47.16 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.53 Total: -0.11 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -4.58 Total: 2.26 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.31 Total: -50.29 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.69 Total: -15.51 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.72 Total: 16.43 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.41 -10.75 -47.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748869326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.244 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds