Wall clock time and date at job start Tue Mar 31 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00355 * 2 1 4 4 H 1.48493 * 109.47000 * 269.99511 * 3 2 1 5 5 H 1.48503 * 109.46969 * 29.99563 * 3 2 1 6 6 H 1.48497 * 109.46846 * 149.99693 * 3 2 1 7 7 C 1.38801 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00075 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00035 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99803 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46888 * 180.02562 * 10 9 7 12 12 O 1.20830 * 120.00114 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.45197 * 117.00037 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47069 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46947 * 180.02562 * 15 14 13 17 17 N 1.46502 * 109.46790 * 179.97438 * 16 15 14 18 18 C 1.36319 * 126.27641 * 265.02213 * 17 16 15 19 19 N 1.30144 * 109.97803 * 180.02562 * 18 17 16 20 20 C 1.35471 * 109.44118 * 359.97438 * 19 18 17 21 21 C 1.37201 * 126.28160 * 85.02248 * 17 16 15 22 22 N 1.32888 * 134.91593 * 359.97438 * 21 17 16 23 23 C 1.31647 * 120.63699 * 180.02562 * 22 21 17 24 24 N 1.32044 * 122.46496 * 359.97438 * 23 22 21 25 25 C 1.32907 * 121.19258 * 0.02562 * 24 23 22 26 26 N 1.38384 * 120.77168 * 179.97438 * 25 24 23 27 27 H 0.97002 * 119.99701 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47608 * 60.00279 * 10 9 7 29 29 H 1.09005 * 109.47408 * 299.99779 * 10 9 7 30 30 H 1.08992 * 109.47428 * 60.00099 * 14 13 11 31 31 H 1.09000 * 109.47266 * 299.99327 * 14 13 11 32 32 H 1.08997 * 109.47396 * 59.99185 * 15 14 13 33 33 H 1.09000 * 109.46489 * 299.99756 * 15 14 13 34 34 H 1.08992 * 109.47545 * 60.00056 * 16 15 14 35 35 H 1.09000 * 109.47272 * 299.99209 * 16 15 14 36 36 H 1.07997 * 125.01216 * 0.02562 * 18 17 16 37 37 H 1.08007 * 118.76543 * 180.28328 * 23 22 21 38 38 H 0.96996 * 120.00498 * 0.02562 * 26 25 24 39 39 H 0.96999 * 119.99890 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4701 -2.1374 0.0005 9 16 3.7722 -1.2022 0.0012 10 6 4.0863 -2.9847 0.0009 11 6 5.5728 -3.2328 0.0021 12 8 6.3410 -2.3001 0.0025 13 8 6.0435 -4.4899 0.0016 14 6 7.4862 -4.6535 0.0022 15 6 7.8303 -6.1444 0.0008 16 6 9.3506 -6.3169 0.0021 17 7 9.6800 -7.7443 0.0014 18 6 9.9533 -8.5096 1.0960 19 7 10.2042 -9.7335 0.7315 20 6 10.1076 -9.8313 -0.6162 21 6 9.7701 -8.5563 -1.1009 22 7 9.6142 -8.3829 -2.4091 23 6 9.7725 -9.3894 -3.2428 24 7 10.0896 -10.6046 -2.8348 25 6 10.2660 -10.8736 -1.5452 26 7 10.5977 -12.1504 -1.1273 27 1 -0.4850 0.8401 -0.0004 28 1 3.6438 -3.4315 -0.8892 29 1 3.6430 -3.4320 0.8907 30 1 7.9047 -4.1845 0.8926 31 1 7.9056 -4.1835 -0.8874 32 1 7.4118 -6.6131 -0.8897 33 1 7.4109 -6.6148 0.8902 34 1 9.7687 -5.8483 0.8929 35 1 9.7704 -5.8464 -0.8870 36 1 9.9606 -8.1528 2.1153 37 1 9.6430 -9.2135 -4.3005 38 1 10.7044 -12.8615 -1.7782 39 1 10.7242 -12.3341 -0.1833 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748869326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:23 Heat of formation + Delta-G solvation = -10.423398 kcal Electronic energy + Delta-G solvation = -24577.964662 eV Core-core repulsion = 20647.126890 eV Total energy + Delta-G solvation = -3930.837772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.53656 -41.52974 -40.29628 -37.92780 -36.86297 -35.95381 -34.69493 -33.13281 -32.71301 -31.26974 -30.26569 -27.92603 -27.28882 -25.22239 -24.61198 -23.28481 -22.47877 -21.69479 -19.96273 -19.61053 -19.40298 -18.69478 -17.95254 -17.77353 -17.44498 -17.15827 -17.02982 -16.87498 -16.10358 -15.98065 -15.72103 -15.33227 -15.01672 -14.94532 -14.90071 -14.48856 -14.25520 -13.64718 -13.57080 -13.36504 -13.11778 -13.02574 -12.77286 -12.74250 -12.55844 -12.33457 -11.90090 -11.67305 -11.58135 -11.43393 -11.18585 -10.95709 -10.63732 -10.35146 -10.12798 -9.06860 -8.94566 -8.52768 -6.26603 -0.13805 0.29410 0.75693 1.06677 1.21602 1.32399 1.40976 1.50285 1.71291 1.87833 2.23551 2.31400 2.63438 2.85452 2.88719 3.01186 3.14986 3.38437 3.59621 3.69474 3.81959 3.93510 4.04396 4.06201 4.11161 4.15935 4.30988 4.39060 4.43075 4.62428 4.75866 4.92727 4.99985 5.27989 5.40837 5.69164 5.69256 5.93329 6.11056 6.15938 6.62329 6.63086 6.70219 6.91038 7.29980 8.59521 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029907 B = 0.001681 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.013627 B =16652.341030 C =16897.326221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.047 3.953 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.233 1.233 7 C -0.534 4.534 8 H 0.064 0.936 9 S -0.159 6.159 10 C -0.093 4.093 11 C 0.493 3.507 12 O -0.515 6.515 13 O -0.354 6.354 14 C 0.066 3.934 15 C -0.122 4.122 16 C 0.119 3.881 17 N -0.469 5.469 18 C 0.265 3.735 19 N -0.489 5.489 20 C -0.132 4.132 21 C 0.277 3.723 22 N -0.577 5.577 23 C 0.355 3.645 24 N -0.605 5.605 25 C 0.493 3.507 26 N -0.804 5.804 27 H 0.278 0.722 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.097 0.903 36 H 0.269 0.731 37 H 0.231 0.769 38 H 0.419 0.581 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.383 -22.112 1.111 33.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.156 1.156 7 C -0.681 4.681 8 H 0.082 0.918 9 S 0.067 5.933 10 C -0.241 4.241 11 C 0.335 3.665 12 O -0.403 6.403 13 O -0.271 6.271 14 C -0.008 4.008 15 C -0.160 4.160 16 C -0.002 4.002 17 N -0.161 5.161 18 C -0.021 4.021 19 N -0.208 5.208 20 C -0.258 4.258 21 C 0.036 3.964 22 N -0.303 5.303 23 C 0.064 3.936 24 N -0.336 5.336 25 C 0.238 3.762 26 N -0.347 5.347 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.162 0.838 35 H 0.115 0.885 36 H 0.284 0.716 37 H 0.247 0.753 38 H 0.251 0.749 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 26.257 -21.230 0.765 33.775 hybrid contribution -1.268 -0.148 0.168 1.287 sum 24.989 -21.378 0.933 32.899 Atomic orbital electron populations 1.70015 1.07387 1.29161 1.48646 1.25578 0.95290 1.02353 0.92704 0.85862 0.80760 0.79411 0.80306 1.18625 1.18309 1.15642 1.22423 0.89914 0.96905 1.58899 0.91788 1.84592 1.06956 1.04051 1.97688 1.22949 0.91787 1.00526 1.08848 1.22747 0.90968 0.80937 0.71836 1.90665 1.59244 1.44676 1.45717 1.86460 1.27651 1.29026 1.83990 1.23095 0.76210 0.97427 1.04108 1.21755 0.95862 0.93945 1.04485 1.21873 0.94532 0.76192 1.07572 1.45310 1.55840 1.10636 1.04330 1.26397 0.96518 0.84886 0.94341 1.70212 1.21846 1.19642 1.09086 1.19923 1.17259 0.95451 0.93199 1.19134 0.98623 0.89699 0.88958 1.67334 1.25756 1.36875 1.00297 1.25085 0.87269 0.80892 1.00387 1.68113 1.26948 1.25074 1.13426 1.18069 0.85333 0.85707 0.87129 1.42177 1.73472 1.06269 1.12784 0.91257 0.85954 0.85607 0.88996 0.90707 0.91955 0.89071 0.83776 0.88477 0.71577 0.75323 0.74912 0.74353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.67 13.97 21.65 0.30 -54.37 16 2 C 0.05 2.67 5.50 84.86 0.47 3.13 16 3 Si 0.92 43.32 27.74 68.60 1.90 45.22 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.23 -10.82 6.74 99.48 0.67 -10.15 16 7 C -0.53 -30.27 10.04 67.95 0.68 -29.59 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.16 -7.67 18.55 -56.49 -1.05 -8.71 16 10 C -0.09 -3.42 6.27 71.24 0.45 -2.98 16 11 C 0.49 16.34 7.98 71.24 0.57 16.91 16 12 O -0.51 -19.57 15.61 21.95 0.34 -19.22 16 13 O -0.35 -9.32 10.22 -51.43 -0.53 -9.84 16 14 C 0.07 1.19 5.47 71.98 0.39 1.58 16 15 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 16 C 0.12 1.10 6.16 86.38 0.53 1.63 16 17 N -0.47 -6.57 2.79 -526.05 -1.47 -8.04 16 18 C 0.26 2.92 12.51 179.95 2.25 5.17 16 19 N -0.49 -8.46 11.28 -191.40 -2.16 -10.61 16 20 C -0.13 -2.69 7.17 39.69 0.28 -2.41 16 21 C 0.28 5.75 8.05 133.86 1.08 6.82 16 22 N -0.58 -12.44 10.47 -197.88 -2.07 -14.51 16 23 C 0.35 6.47 12.25 180.85 2.22 8.69 16 24 N -0.60 -11.64 10.45 -196.97 -2.06 -13.70 16 25 C 0.49 9.22 7.87 133.46 1.05 10.27 16 26 N -0.80 -9.03 9.05 -54.66 -0.49 -9.52 16 27 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.12 4.24 8.14 -2.40 -0.02 4.22 16 29 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 30 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 31 H 0.07 1.39 8.13 -2.39 -0.02 1.37 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.14 0.23 8.13 -2.39 -0.02 0.21 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.27 0.02 8.06 -2.91 -0.02 -0.01 16 37 H 0.23 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.42 3.02 8.95 -92.71 -0.83 2.19 16 39 H 0.42 3.71 8.85 -92.71 -0.82 2.89 16 Total: -1.00 -79.64 361.62 2.31 -77.33 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.56 Total: 8.20 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 10.15 Total: 17.78 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -7.95 Total: -110.75 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.18 Total: -29.07 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.90 Total: 45.22 kcal Atomic # 16 Polarization: -7.67 SS G_CDS: -1.05 Total: -8.71 kcal Total: -79.64 2.31 -77.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748869326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.905 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds