Wall clock time and date at job start Tue Mar 31 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00055 * 2 1 4 4 C 1.38729 * 120.05750 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94438 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05554 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94342 * 179.97438 * 6 5 4 8 8 F 1.39897 * 109.47068 * 209.99915 * 7 6 5 9 9 F 1.39895 * 109.47042 * 330.00224 * 7 6 5 10 10 C 1.50699 * 109.46817 * 90.00150 * 7 6 5 11 11 O 1.21306 * 120.00187 * 24.99995 * 10 7 6 12 12 N 1.34775 * 120.00244 * 205.00107 * 10 7 6 13 13 C 1.40596 * 120.00472 * 180.02562 * 12 10 7 14 14 C 1.40652 * 126.07864 * 359.68645 * 13 12 10 15 15 N 1.30906 * 108.38009 * 179.81839 * 14 13 12 16 16 N 1.40065 * 108.41090 * 0.44108 * 15 14 13 17 17 C 1.37323 * 126.06508 * 179.69572 * 16 15 14 18 18 H 1.08003 * 119.99420 * 180.02562 * 17 16 15 19 19 C 1.38979 * 120.00568 * 0.02763 * 17 16 15 20 20 N 1.31292 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00283 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47461 * 89.99883 * 21 19 17 23 23 H 1.48504 * 109.47081 * 210.00029 * 21 19 17 24 24 H 1.48500 * 109.47070 * 329.99550 * 21 19 17 25 25 C 1.35674 * 126.08175 * 179.97438 * 13 12 10 26 26 C 1.38260 * 120.11162 * 0.25196 * 6 5 4 27 27 C 1.38146 * 120.05656 * 359.45259 * 26 6 5 28 28 H 1.09005 * 109.47256 * 300.00155 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99876 * 1 2 3 30 30 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02862 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97087 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99752 * 359.97438 * 12 10 7 34 34 H 1.08001 * 125.80438 * 359.96986 * 14 13 12 35 35 H 0.97005 * 120.00263 * 180.02562 * 20 19 17 36 36 H 1.08001 * 126.25022 * 359.97438 * 25 13 12 37 37 H 1.08008 * 119.97252 * 179.70322 * 26 6 5 38 38 H 1.07998 * 120.02742 * 180.25165 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 9 3.1802 5.9519 0.6636 9 9 5.2158 4.9148 0.6615 10 6 4.2133 5.4677 -1.4177 11 8 3.5016 5.0505 -2.3070 12 7 5.2075 6.3328 -1.7000 13 6 5.4193 6.7522 -3.0251 14 6 4.6786 6.3478 -4.1504 15 7 5.1670 6.9509 -5.2046 16 7 6.2406 7.7531 -4.7976 17 6 7.0173 8.5390 -5.6131 18 1 7.8246 9.1205 -5.1930 19 6 6.7644 8.5861 -6.9788 20 7 5.7832 7.8789 -7.4896 21 14 7.8213 9.6546 -8.0882 22 1 8.9776 8.8642 -8.5814 23 1 7.0123 10.1216 -9.2426 24 1 8.3141 10.8276 -7.3223 25 6 6.3779 7.6148 -3.4467 26 6 1.9211 3.6048 0.0079 27 6 1.2915 2.3751 0.0013 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0208 0.3800 -0.0005 32 1 5.1345 2.5751 0.0000 33 1 5.7764 6.6667 -0.9888 34 1 3.8468 5.6589 -4.1450 35 1 5.6069 7.9114 -8.4429 36 1 7.1150 8.1032 -2.8265 37 1 1.3341 4.5114 0.0140 38 1 0.2129 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755788515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:34 Heat of formation + Delta-G solvation = -45.806265 kcal Electronic energy + Delta-G solvation = -28170.430660 eV Core-core repulsion = 23651.925435 eV Total energy + Delta-G solvation = -4518.505226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.27118 -47.27084 -40.38728 -39.97445 -38.70980 -37.61964 -34.44036 -33.25091 -31.61858 -31.24601 -30.33228 -28.46512 -27.78831 -26.34142 -24.78526 -22.95542 -22.35631 -21.11745 -20.55120 -19.59140 -18.57304 -18.27318 -17.69806 -17.58898 -17.22272 -16.13392 -16.01282 -15.54965 -15.22111 -15.01309 -14.94677 -14.51388 -14.07052 -13.95685 -13.91834 -13.75654 -13.60533 -13.34797 -13.25566 -13.14010 -13.00242 -12.77771 -12.24169 -11.79457 -11.64377 -11.51251 -11.38680 -11.30427 -11.09564 -11.00662 -10.56890 -10.34441 -9.48034 -9.25681 -9.21101 -8.90323 -8.50120 -8.14695 -6.83244 -6.61655 -4.29846 1.00384 1.15378 2.35434 2.84246 2.95212 2.97070 3.03375 3.07832 3.40972 3.57019 3.74443 3.81316 4.01838 4.27081 4.44906 4.59182 4.61991 4.71172 4.84986 4.89090 4.95203 4.96807 5.09678 5.16653 5.26858 5.41345 5.78655 5.88170 6.07187 6.16871 6.23250 6.32080 6.43162 6.72091 6.86358 6.90821 7.08475 7.14233 7.76974 7.92921 8.14395 8.36854 8.65086 9.29346 9.57714 10.34134 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002486 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.905238 B =11258.296035 C =12017.797528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.145 3.855 4 C -0.153 4.153 5 C -0.040 4.040 6 C -0.175 4.175 7 C 0.341 3.659 8 F -0.179 7.179 9 F -0.186 7.186 10 C 0.468 3.532 11 O -0.493 6.493 12 N -0.599 5.599 13 C -0.068 4.068 14 C -0.028 4.028 15 N -0.259 5.259 16 N -0.138 5.138 17 C -0.322 4.322 18 H 0.118 0.882 19 C 0.046 3.954 20 N -0.768 5.768 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.263 1.263 25 C -0.078 4.078 26 C -0.027 4.027 27 C -0.210 4.210 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.404 0.596 34 H 0.176 0.824 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -9.966 15.812 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.100 3.900 4 C -0.172 4.172 5 C -0.058 4.058 6 C -0.176 4.176 7 C 0.301 3.699 8 F -0.160 7.160 9 F -0.166 7.166 10 C 0.248 3.752 11 O -0.367 6.367 12 N -0.240 5.240 13 C -0.174 4.174 14 C -0.203 4.203 15 N -0.090 5.090 16 N 0.095 4.905 17 C -0.454 4.454 18 H 0.136 0.864 19 C -0.172 4.172 20 N -0.394 5.394 21 Si 0.760 3.240 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.229 4.229 26 C -0.045 4.045 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.238 0.762 34 H 0.193 0.807 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.152 0.848 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.603 -10.319 13.695 18.375 hybrid contribution 0.650 0.849 1.018 1.477 sum -5.953 -9.470 14.714 18.482 Atomic orbital electron populations 1.23106 0.78124 1.04085 1.01672 1.86076 1.21660 1.26825 1.88308 1.19138 0.92430 0.84201 0.94278 1.20325 0.91368 0.98351 1.07126 1.20715 1.00332 0.90443 0.94335 1.19614 0.94867 0.92229 1.10896 1.19669 0.76233 0.87167 0.86867 1.93062 1.73338 1.67335 1.82221 1.93032 1.44135 1.96533 1.82946 1.20198 0.83526 0.82372 0.89066 1.90681 1.45946 1.55133 1.44967 1.42409 1.30976 1.42140 1.08522 1.17232 1.06127 1.10777 0.83227 1.24096 1.02958 1.04314 0.88953 1.78283 1.01431 1.09494 1.19808 1.44589 1.18124 1.24984 1.02840 1.19918 1.12794 1.23692 0.88996 0.86435 1.25666 0.96684 0.97103 0.97708 1.70212 1.23778 1.31796 1.13590 0.85801 0.79286 0.79630 0.79299 1.19517 1.20036 1.18740 1.21263 1.05552 1.09206 0.86870 1.20661 0.92860 0.98028 0.92928 1.21158 1.00301 0.91756 1.09639 0.92485 0.92276 0.88122 0.84432 0.84361 0.76225 0.80731 0.91340 0.83384 0.84761 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.29 10.50 -19.44 -0.20 -3.49 16 3 C 0.15 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 5 C -0.04 -0.50 9.39 -39.61 -0.37 -0.87 16 6 C -0.17 -2.43 4.39 -104.60 -0.46 -2.88 16 7 C 0.34 5.02 2.22 -29.03 -0.06 4.96 16 8 F -0.18 -2.59 16.18 2.25 0.04 -2.56 16 9 F -0.19 -2.49 15.65 2.25 0.04 -2.46 16 10 C 0.47 8.50 7.19 -10.99 -0.08 8.42 16 11 O -0.49 -10.42 13.39 5.53 0.07 -10.34 16 12 N -0.60 -11.01 5.40 -10.00 -0.05 -11.06 16 13 C -0.07 -1.57 6.90 -83.84 -0.58 -2.15 16 14 C -0.03 -0.72 10.85 -17.04 -0.18 -0.91 16 15 N -0.26 -7.46 10.40 30.80 0.32 -7.14 16 16 N -0.14 -3.76 3.74 -11.41 -0.04 -3.80 16 17 C -0.32 -8.38 10.25 -14.82 -0.15 -8.53 16 18 H 0.12 2.72 7.83 -52.48 -0.41 2.31 16 19 C 0.05 1.17 5.50 -17.51 -0.10 1.07 16 20 N -0.77 -21.18 11.81 55.49 0.66 -20.53 16 21 Si 0.94 18.65 29.55 -169.99 -5.02 13.62 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C -0.08 -1.81 11.49 -16.40 -0.19 -2.00 16 26 C -0.03 -0.34 9.36 -39.61 -0.37 -0.71 16 27 C -0.21 -2.34 9.04 -39.43 -0.36 -2.69 16 28 H 0.06 0.30 7.66 -51.93 -0.40 -0.09 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 1.53 7.60 -52.48 -0.40 1.13 16 33 H 0.40 6.00 8.38 -40.82 -0.34 5.66 16 34 H 0.18 4.48 5.92 -52.49 -0.31 4.17 16 35 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.15 2.86 8.06 -52.49 -0.42 2.43 16 37 H 0.13 1.59 7.59 -52.48 -0.40 1.19 16 38 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -32.93 342.51 -5.00 -37.93 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.39 Total: 10.55 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.57 Total: -5.88 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.88 Total: -42.53 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.13 Total: -13.84 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.93 -5.00 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755788515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.879 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds