Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00055 * 2 1 4 4 C 1.38729 * 120.05750 * 180.02562 * 3 2 1 5 5 C 1.38143 * 119.94438 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05554 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94342 * 179.97438 * 6 5 4 8 8 F 1.39897 * 109.47068 * 209.99915 * 7 6 5 9 9 F 1.39895 * 109.47042 * 330.00224 * 7 6 5 10 10 C 1.50699 * 109.46817 * 90.00150 * 7 6 5 11 11 O 1.21306 * 120.00187 * 24.99995 * 10 7 6 12 12 N 1.34775 * 120.00244 * 205.00107 * 10 7 6 13 13 C 1.40596 * 120.00472 * 180.02562 * 12 10 7 14 14 C 1.40652 * 126.07864 * 359.68645 * 13 12 10 15 15 N 1.30906 * 108.38009 * 179.81839 * 14 13 12 16 16 N 1.40065 * 108.41090 * 0.44108 * 15 14 13 17 17 C 1.37323 * 126.06508 * 179.69572 * 16 15 14 18 18 H 1.08003 * 119.99420 * 180.02562 * 17 16 15 19 19 C 1.38979 * 120.00568 * 0.02763 * 17 16 15 20 20 N 1.31292 * 120.00028 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00283 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47461 * 89.99883 * 21 19 17 23 23 H 1.48504 * 109.47081 * 210.00029 * 21 19 17 24 24 H 1.48500 * 109.47070 * 329.99550 * 21 19 17 25 25 C 1.35674 * 126.08175 * 179.97438 * 13 12 10 26 26 C 1.38260 * 120.11162 * 0.25196 * 6 5 4 27 27 C 1.38146 * 120.05656 * 359.45259 * 26 6 5 28 28 H 1.09005 * 109.47256 * 300.00155 * 1 2 3 29 29 H 1.08996 * 109.47358 * 59.99876 * 1 2 3 30 30 H 1.09004 * 109.46915 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.02862 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97087 * 179.97438 * 5 4 3 33 33 H 0.97001 * 119.99752 * 359.97438 * 12 10 7 34 34 H 1.08001 * 125.80438 * 359.96986 * 14 13 12 35 35 H 0.97005 * 120.00263 * 180.02562 * 20 19 17 36 36 H 1.08001 * 126.25022 * 359.97438 * 25 13 12 37 37 H 1.08008 * 119.97252 * 179.70322 * 26 6 5 38 38 H 1.07998 * 120.02742 * 180.25165 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0028 8 9 3.1802 5.9519 0.6636 9 9 5.2158 4.9148 0.6615 10 6 4.2133 5.4677 -1.4177 11 8 3.5016 5.0505 -2.3070 12 7 5.2075 6.3328 -1.7000 13 6 5.4193 6.7522 -3.0251 14 6 4.6786 6.3478 -4.1504 15 7 5.1670 6.9509 -5.2046 16 7 6.2406 7.7531 -4.7976 17 6 7.0173 8.5390 -5.6131 18 1 7.8246 9.1205 -5.1930 19 6 6.7644 8.5861 -6.9788 20 7 5.7832 7.8789 -7.4896 21 14 7.8213 9.6546 -8.0882 22 1 8.9776 8.8642 -8.5814 23 1 7.0123 10.1216 -9.2426 24 1 8.3141 10.8276 -7.3223 25 6 6.3779 7.6148 -3.4467 26 6 1.9211 3.6048 0.0079 27 6 1.2915 2.3751 0.0013 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 4.0208 0.3800 -0.0005 32 1 5.1345 2.5751 0.0000 33 1 5.7764 6.6667 -0.9888 34 1 3.8468 5.6589 -4.1450 35 1 5.6069 7.9114 -8.4429 36 1 7.1150 8.1032 -2.8265 37 1 1.3341 4.5114 0.0140 38 1 0.2129 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755788515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = -67.009691 kcal Electronic energy + Delta-G solvation = -28171.350110 eV Core-core repulsion = 23651.925435 eV Total energy + Delta-G solvation = -4519.424675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.44499 -48.43365 -41.82209 -41.19637 -40.31418 -38.52163 -36.13501 -35.07719 -32.64033 -32.28607 -32.13163 -30.06062 -28.71588 -27.59345 -26.52492 -23.89630 -23.54885 -22.86778 -21.91193 -21.38590 -19.86300 -19.41343 -19.08457 -18.84258 -18.48094 -17.46133 -17.03757 -16.82632 -16.69415 -16.45903 -16.05713 -15.87415 -15.60940 -15.27220 -15.00645 -14.92217 -14.86578 -14.74883 -14.58547 -14.43392 -14.22976 -13.68864 -13.50712 -13.37869 -12.93773 -12.92586 -12.87379 -12.72385 -12.12588 -12.08813 -12.00471 -11.90190 -11.08951 -11.03737 -10.86194 -10.15616 -10.11875 -9.39803 -8.66781 -8.49518 -6.28080 0.04510 0.24826 0.83533 1.34942 1.38763 1.48780 1.58877 1.78558 2.11895 2.25125 2.36583 2.40456 2.60746 2.72079 2.97118 3.06926 3.36394 3.53200 3.75698 3.85948 4.17423 4.31123 4.38241 4.39870 4.44326 4.49905 4.52942 4.73798 4.90321 4.93514 4.96718 5.00582 5.17021 5.19044 5.27474 5.28699 5.55602 5.90758 6.18911 6.30864 6.37870 6.66346 6.95059 7.40359 7.60920 8.49671 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.002486 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.905238 B =11258.296035 C =12017.797528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.142 3.858 4 C -0.160 4.160 5 C -0.048 4.048 6 C -0.200 4.200 7 C 0.359 3.641 8 F -0.176 7.176 9 F -0.175 7.175 10 C 0.468 3.532 11 O -0.522 6.522 12 N -0.594 5.594 13 C -0.055 4.055 14 C -0.051 4.051 15 N -0.308 5.308 16 N -0.163 5.163 17 C -0.352 4.352 18 H 0.143 0.857 19 C -0.006 4.006 20 N -0.822 5.822 21 Si 1.020 2.980 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.244 1.244 25 C -0.073 4.073 26 C -0.039 4.039 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.422 0.578 34 H 0.170 0.830 35 H 0.278 0.722 36 H 0.191 0.809 37 H 0.138 0.862 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -9.903 17.342 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.096 3.904 4 C -0.179 4.179 5 C -0.066 4.066 6 C -0.201 4.201 7 C 0.319 3.681 8 F -0.156 7.156 9 F -0.156 7.156 10 C 0.250 3.750 11 O -0.398 6.398 12 N -0.238 5.238 13 C -0.161 4.161 14 C -0.227 4.227 15 N -0.140 5.140 16 N 0.068 4.932 17 C -0.483 4.483 18 H 0.161 0.839 19 C -0.218 4.218 20 N -0.450 5.450 21 Si 0.839 3.161 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.167 1.167 25 C -0.223 4.223 26 C -0.058 4.058 27 C -0.227 4.227 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.166 0.834 33 H 0.260 0.740 34 H 0.187 0.813 35 H 0.087 0.913 36 H 0.208 0.792 37 H 0.156 0.844 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.877 -10.262 15.293 19.332 hybrid contribution 0.312 0.687 0.697 1.028 sum -5.565 -9.575 15.990 19.451 Atomic orbital electron populations 1.23431 0.76091 1.05949 1.02528 1.86072 1.23794 1.26205 1.87941 1.19318 0.92695 0.84837 0.93516 1.20585 0.91915 0.98677 1.06690 1.20895 1.00931 0.90441 0.94325 1.19691 0.95535 0.91859 1.13019 1.19209 0.76732 0.87605 0.84596 1.93071 1.73302 1.67425 1.81841 1.93056 1.43584 1.96505 1.82433 1.20884 0.82428 0.81187 0.90492 1.90668 1.46795 1.55807 1.46568 1.42357 1.31744 1.42421 1.07299 1.17268 1.04782 1.09536 0.84482 1.24160 1.03598 1.04867 0.90045 1.78181 1.03087 1.11073 1.21613 1.44879 1.18334 1.25648 1.04290 1.20668 1.13580 1.24238 0.89805 0.83936 1.26897 0.97698 0.98077 0.99137 1.70388 1.26312 1.34235 1.14031 0.84579 0.76999 0.77916 0.76652 1.18860 1.20222 1.16676 1.21997 1.05789 1.08436 0.86110 1.20839 0.92680 0.98959 0.93280 1.21420 1.01670 0.91003 1.08656 0.91076 0.91909 0.85915 0.82746 0.83370 0.73990 0.81329 0.91273 0.79200 0.84421 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.33 -6.22 10.50 -92.46 -0.97 -7.19 16 3 C 0.14 3.09 6.69 22.51 0.15 3.24 16 4 C -0.16 -3.53 9.99 22.36 0.22 -3.30 16 5 C -0.05 -1.15 9.39 22.25 0.21 -0.95 16 6 C -0.20 -5.39 4.39 -19.85 -0.09 -5.47 16 7 C 0.36 10.19 2.22 29.10 0.06 10.25 16 8 F -0.18 -4.88 16.18 44.97 0.73 -4.15 16 9 F -0.18 -4.39 15.65 44.97 0.70 -3.69 16 10 C 0.47 16.79 7.19 87.66 0.63 17.42 16 11 O -0.52 -22.40 13.39 -3.11 -0.04 -22.44 16 12 N -0.59 -21.20 5.40 -303.93 -1.64 -22.84 16 13 C -0.05 -2.51 6.90 37.73 0.26 -2.25 16 14 C -0.05 -2.77 10.85 85.42 0.93 -1.84 16 15 N -0.31 -18.36 10.40 -56.46 -0.59 -18.95 16 16 N -0.16 -8.95 3.74 -190.02 -0.71 -9.66 16 17 C -0.35 -18.31 10.25 84.01 0.86 -17.45 16 18 H 0.14 6.38 7.83 -2.91 -0.02 6.36 16 19 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 20 N -0.82 -46.89 11.81 21.66 0.26 -46.63 16 21 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 25 C -0.07 -3.31 11.49 83.37 0.96 -2.36 16 26 C -0.04 -0.97 9.36 22.25 0.21 -0.77 16 27 C -0.21 -4.35 9.04 22.37 0.20 -4.15 16 28 H 0.07 0.57 7.66 -2.38 -0.02 0.55 16 29 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 30 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.15 3.12 7.60 -2.91 -0.02 3.09 16 33 H 0.42 11.69 8.38 -92.71 -0.78 10.92 16 34 H 0.17 9.09 5.92 -2.91 -0.02 9.07 16 35 H 0.28 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 37 H 0.14 3.18 7.59 -2.91 -0.02 3.16 16 38 H 0.16 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -73.80 342.51 6.32 -67.48 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.37 Total: 34.29 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 6.19 Total: -6.20 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -2.68 Total: -98.09 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.01 Total: -29.62 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 1.43 Total: -7.84 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -73.80 6.32 -67.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755788515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.472 kcal (2) G-P(sol) polarization free energy of solvation -73.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds