Wall clock time and date at job start Tue Mar 31 2020 19:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47398 * 2 1 4 4 C 1.50700 * 109.47202 * 240.00090 * 2 1 3 5 5 H 1.08004 * 120.00200 * 240.00581 * 4 2 1 6 6 C 1.37880 * 120.00043 * 59.99446 * 4 2 1 7 7 N 1.31515 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00378 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46947 * 90.00019 * 8 6 4 10 10 H 1.48491 * 109.47351 * 210.00470 * 8 6 4 11 11 H 1.48503 * 109.47166 * 330.00829 * 8 6 4 12 12 C 1.53003 * 109.47362 * 120.00123 * 2 1 3 13 13 O 1.45193 * 109.46763 * 300.00099 * 12 2 1 14 14 C 1.34756 * 116.99833 * 180.02562 * 13 12 2 15 15 O 1.21502 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.47475 * 119.99986 * 179.97438 * 14 13 12 17 17 C 1.39813 * 120.08729 * 6.60307 * 16 14 13 18 18 C 1.38062 * 119.89919 * 179.97438 * 17 16 14 19 19 C 1.39604 * 119.98713 * 359.97438 * 18 17 16 20 20 C 1.38835 * 120.06118 * 0.02562 * 19 18 17 21 21 C 1.37782 * 120.22754 * 0.25054 * 20 19 18 22 22 N 1.48016 * 119.99799 * 179.74546 * 21 20 19 23 23 O 1.21796 * 120.00535 * 50.88724 * 22 21 20 24 24 O 1.21803 * 119.99919 * 230.87771 * 22 21 20 25 25 O 1.36344 * 108.58367 * 180.02562 * 19 18 17 26 26 C 1.43966 * 105.54146 * 17.34695 * 25 19 18 27 27 O 1.36543 * 131.43145 * 180.02562 * 18 17 16 28 28 H 1.09002 * 109.47228 * 299.99852 * 1 2 3 29 29 H 1.09003 * 109.47527 * 60.00089 * 1 2 3 30 30 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47275 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46709 * 300.00412 * 3 2 1 33 33 H 1.09002 * 109.46810 * 59.99892 * 3 2 1 34 34 H 0.96995 * 120.00358 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46660 * 179.97438 * 12 2 1 36 36 H 1.08994 * 109.46862 * 59.99942 * 12 2 1 37 37 H 1.07999 * 120.05213 * 359.95340 * 17 16 14 38 38 H 1.08005 * 119.88267 * 179.97438 * 20 19 18 39 39 H 1.08997 * 110.56830 * 91.33147 * 26 25 19 40 40 H 1.09000 * 110.56662 * 214.19233 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7584 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4347 14 6 1.9186 -0.5486 3.6274 15 8 2.6195 -1.5398 3.6754 16 6 1.4645 0.0946 4.8745 17 6 0.5482 1.1494 4.8257 18 6 0.1254 1.7484 5.9956 19 6 0.6124 1.3000 7.2247 20 6 1.5223 0.2524 7.2718 21 6 1.9525 -0.3457 6.1075 22 7 2.9269 -1.4584 6.1633 23 8 2.7251 -2.4084 6.8983 24 8 3.9306 -1.4242 5.4741 25 8 0.0464 2.0468 8.2150 26 6 -1.0980 2.6806 7.6140 27 8 -0.7454 2.7756 6.2213 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7092 1.1617 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.1720 1.4955 3.8744 38 1 1.8976 -0.0919 8.2242 39 1 -1.9882 2.0648 7.7424 40 1 -1.2531 3.6726 8.0382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:36 Heat of formation + Delta-G solvation = -106.571665 kcal Electronic energy + Delta-G solvation = -29446.812034 eV Core-core repulsion = 25004.466587 eV Total energy + Delta-G solvation = -4442.345447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.08859 -42.12875 -40.26946 -38.34436 -37.12055 -36.78329 -36.35515 -35.00940 -32.13097 -31.56886 -31.18870 -27.21944 -26.77448 -25.70414 -25.69378 -25.17058 -24.38132 -23.12192 -21.62513 -19.97037 -19.02198 -18.89212 -18.69314 -18.23833 -17.99320 -17.11060 -16.77041 -16.50527 -16.05822 -15.86270 -15.66107 -15.11630 -14.72483 -14.70419 -14.64082 -13.84903 -13.75102 -13.24108 -13.08302 -12.93060 -12.48699 -11.98769 -11.86875 -11.58726 -11.51985 -11.30166 -11.18265 -11.08281 -11.00709 -10.73681 -10.51046 -10.41880 -10.20074 -10.02363 -9.90425 -9.50609 -9.42567 -9.05911 -8.83215 -8.42315 -6.06908 -4.18558 -0.50917 0.06573 0.80433 1.03787 1.89192 2.15671 2.58565 2.66613 2.92411 3.26157 3.33240 3.37494 3.44942 3.89389 3.92377 4.15738 4.26892 4.34117 4.48391 4.59097 4.78050 4.98720 5.13593 5.15332 5.20079 5.39423 5.92817 6.01045 6.13355 6.29160 6.36741 6.58413 6.83274 6.90199 7.02909 7.05143 7.31140 7.54415 7.61148 7.65424 7.82287 7.98129 8.10910 8.32198 8.81210 9.47446 10.94387 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.003121 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.381845 B = 8969.931870 C =10494.586785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.071 3.929 3 C -0.130 4.130 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.085 3.915 13 O -0.336 6.336 14 C 0.491 3.509 15 O -0.479 6.479 16 C -0.049 4.049 17 C -0.038 4.038 18 C 0.067 3.933 19 C 0.069 3.931 20 C -0.062 4.062 21 C 0.026 3.974 22 N 0.022 4.978 23 O -0.163 6.163 24 O -0.079 6.079 25 O -0.294 6.294 26 C 0.210 3.790 27 O -0.290 6.290 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.025 0.975 32 H 0.085 0.915 33 H 0.015 0.985 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.179 0.821 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 5.368 20.952 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.070 3.930 3 C -0.188 4.188 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.013 3.987 13 O -0.251 6.251 14 C 0.332 3.668 15 O -0.368 6.368 16 C -0.052 4.052 17 C -0.057 4.057 18 C 0.021 3.979 19 C 0.023 3.977 20 C -0.082 4.082 21 C -0.056 4.056 22 N 0.553 4.447 23 O -0.374 6.374 24 O -0.314 6.314 25 O -0.209 6.209 26 C 0.099 3.901 27 O -0.206 6.206 28 H 0.034 0.966 29 H 0.104 0.896 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.197 0.803 38 H 0.183 0.817 39 H 0.114 0.886 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.709 5.937 20.899 22.463 hybrid contribution 0.388 -0.658 -0.663 1.012 sum -5.321 5.279 20.236 21.579 Atomic orbital electron populations 1.21788 0.97294 0.99036 1.00657 1.18280 0.93426 0.93168 0.88092 1.21784 0.98314 0.98034 1.00662 1.20921 1.32134 1.12404 0.89654 0.92341 1.24847 0.94735 0.94873 0.98816 1.69817 1.36304 1.22507 1.23398 0.86520 0.79364 0.79365 0.82354 1.20626 1.21141 1.19796 1.23887 0.98852 0.95917 0.80078 1.86555 1.68721 1.55632 1.14207 1.20454 0.78706 0.82752 0.84867 1.91004 1.33485 1.24198 1.88089 1.18712 0.98753 0.97467 0.90285 1.20377 0.95132 0.91884 0.98280 1.19821 0.94393 0.89461 0.94197 1.19465 0.97842 0.93845 0.86531 1.19224 0.97411 0.93344 0.98189 1.20389 0.97484 0.93883 0.93855 1.43028 1.01073 1.00971 0.99660 1.94546 1.81970 1.24026 1.36848 1.94637 1.14788 1.84334 1.37604 1.87409 1.41934 1.58560 1.33028 1.25930 0.88330 1.00992 0.74816 1.87520 1.59683 1.44992 1.28358 0.96626 0.89603 0.95734 0.95603 0.89640 0.96560 0.92856 0.91701 0.92047 0.80348 0.81714 0.88565 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.11 37.15 0.30 -2.68 16 2 C 0.07 1.66 0.58 -155.66 -0.09 1.57 16 3 C -0.13 -3.01 8.11 37.16 0.30 -2.70 16 4 C -0.51 -13.37 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.36 9.35 55.43 0.52 -22.84 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.08 1.80 4.27 37.16 0.16 1.96 16 13 O -0.34 -6.28 8.14 -40.64 -0.33 -6.61 16 14 C 0.49 8.61 7.75 34.49 0.27 8.87 16 15 O -0.48 -9.67 12.78 -27.44 -0.35 -10.02 16 16 C -0.05 -0.68 5.87 -104.99 -0.62 -1.30 16 17 C -0.04 -0.42 9.62 -39.06 -0.38 -0.80 16 18 C 0.07 0.65 7.14 -39.14 -0.28 0.37 16 19 C 0.07 0.64 7.16 -38.85 -0.28 0.36 16 20 C -0.06 -0.62 9.82 -39.53 -0.39 -1.01 16 21 C 0.03 0.34 6.31 -79.56 -0.50 -0.16 16 22 N 0.02 0.35 3.58 34.15 0.12 0.47 16 23 O -0.16 -2.58 19.14 -29.46 -0.56 -3.15 16 24 O -0.08 -1.41 16.11 -37.24 -0.60 -2.01 16 25 O -0.29 -2.25 11.39 -45.18 -0.51 -2.76 16 26 C 0.21 1.02 8.88 101.05 0.90 1.92 16 27 O -0.29 -2.44 11.41 -45.83 -0.52 -2.97 16 28 H 0.01 0.31 7.68 -51.93 -0.40 -0.09 16 29 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 33 H 0.02 0.33 7.68 -51.93 -0.40 -0.07 16 34 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.18 1.92 7.62 -52.49 -0.40 1.52 16 38 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -30.18 347.62 -7.32 -37.50 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.33 Total: -2.84 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.97 Total: -5.52 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.64 Total: -22.37 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -2.88 Total: -27.51 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.18 -7.32 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.069 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds