Wall clock time and date at job start Tue Mar 31 2020 19:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47398 * 2 1 4 4 C 1.50700 * 109.47202 * 240.00090 * 2 1 3 5 5 H 1.08004 * 120.00200 * 240.00581 * 4 2 1 6 6 C 1.37880 * 120.00043 * 59.99446 * 4 2 1 7 7 N 1.31515 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00378 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46947 * 90.00019 * 8 6 4 10 10 H 1.48491 * 109.47351 * 210.00470 * 8 6 4 11 11 H 1.48503 * 109.47166 * 330.00829 * 8 6 4 12 12 C 1.53003 * 109.47362 * 120.00123 * 2 1 3 13 13 O 1.45193 * 109.46763 * 300.00099 * 12 2 1 14 14 C 1.34756 * 116.99833 * 180.02562 * 13 12 2 15 15 O 1.21502 * 120.00055 * 359.97438 * 14 13 12 16 16 C 1.47475 * 119.99986 * 179.97438 * 14 13 12 17 17 C 1.39813 * 120.08729 * 6.60307 * 16 14 13 18 18 C 1.38062 * 119.89919 * 179.97438 * 17 16 14 19 19 C 1.39604 * 119.98713 * 359.97438 * 18 17 16 20 20 C 1.38835 * 120.06118 * 0.02562 * 19 18 17 21 21 C 1.37782 * 120.22754 * 0.25054 * 20 19 18 22 22 N 1.48016 * 119.99799 * 179.74546 * 21 20 19 23 23 O 1.21796 * 120.00535 * 50.88724 * 22 21 20 24 24 O 1.21803 * 119.99919 * 230.87771 * 22 21 20 25 25 O 1.36344 * 108.58367 * 180.02562 * 19 18 17 26 26 C 1.43966 * 105.54146 * 17.34695 * 25 19 18 27 27 O 1.36543 * 131.43145 * 180.02562 * 18 17 16 28 28 H 1.09002 * 109.47228 * 299.99852 * 1 2 3 29 29 H 1.09003 * 109.47527 * 60.00089 * 1 2 3 30 30 H 1.09003 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47275 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46709 * 300.00412 * 3 2 1 33 33 H 1.09002 * 109.46810 * 59.99892 * 3 2 1 34 34 H 0.96995 * 120.00358 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46660 * 179.97438 * 12 2 1 36 36 H 1.08994 * 109.46862 * 59.99942 * 12 2 1 37 37 H 1.07999 * 120.05213 * 359.95340 * 17 16 14 38 38 H 1.08005 * 119.88267 * 179.97438 * 20 19 18 39 39 H 1.08997 * 110.56830 * 91.33147 * 26 25 19 40 40 H 1.09000 * 110.56662 * 214.19233 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1617 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7584 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0368 2.4347 14 6 1.9186 -0.5486 3.6274 15 8 2.6195 -1.5398 3.6754 16 6 1.4645 0.0946 4.8745 17 6 0.5482 1.1494 4.8257 18 6 0.1254 1.7484 5.9956 19 6 0.6124 1.3000 7.2247 20 6 1.5223 0.2524 7.2718 21 6 1.9525 -0.3457 6.1075 22 7 2.9269 -1.4584 6.1633 23 8 2.7251 -2.4084 6.8983 24 8 3.9306 -1.4242 5.4741 25 8 0.0464 2.0468 8.2150 26 6 -1.0980 2.6806 7.6140 27 8 -0.7454 2.7756 6.2213 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7092 1.1617 -3.4844 35 1 3.1300 -0.7216 1.2489 36 1 1.6767 -1.7489 1.2492 37 1 0.1720 1.4955 3.8744 38 1 1.8976 -0.0919 8.2242 39 1 -1.9882 2.0648 7.7424 40 1 -1.2531 3.6726 8.0382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:35 Heat of formation + Delta-G solvation = -122.240420 kcal Electronic energy + Delta-G solvation = -29447.491482 eV Core-core repulsion = 25004.466587 eV Total energy + Delta-G solvation = -4443.024895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.84198 -43.21758 -41.66354 -39.36419 -38.32326 -37.76551 -37.61891 -36.73482 -33.41565 -32.89120 -32.35483 -28.24699 -27.78407 -27.57282 -27.29596 -26.73247 -25.34920 -24.14147 -22.81174 -20.97886 -20.77766 -20.02555 -19.83195 -19.19112 -18.68792 -18.37604 -17.82281 -17.74520 -17.58811 -17.11807 -16.98335 -16.47943 -15.87753 -15.54935 -15.35753 -15.06705 -14.99222 -14.67515 -14.37611 -14.23965 -13.72816 -13.38591 -13.33636 -13.15347 -12.88604 -12.80551 -12.65216 -12.49199 -12.39448 -12.34852 -12.32284 -12.13479 -11.85172 -11.74712 -11.32904 -11.26559 -10.76671 -10.75271 -10.40350 -9.78924 -8.05444 -6.22996 -1.53277 -0.81993 -0.32280 0.00685 0.91197 1.18123 1.43246 1.44448 1.48251 1.55661 1.83974 1.99184 2.44430 2.67303 2.96660 3.18499 3.20955 3.34570 3.58393 3.84514 3.94443 4.06524 4.17847 4.20686 4.23508 4.28522 4.41840 4.54902 4.57845 4.81420 5.04147 5.06237 5.16361 5.21956 5.24090 5.45311 5.51180 5.63617 5.64294 6.08312 6.15760 6.31619 6.35997 6.42419 6.80929 7.45015 8.94057 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.003121 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.381845 B = 8969.931870 C =10494.586785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.063 3.937 3 C -0.120 4.120 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.950 3.050 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.098 3.902 13 O -0.333 6.333 14 C 0.490 3.510 15 O -0.511 6.511 16 C -0.068 4.068 17 C -0.031 4.031 18 C 0.078 3.922 19 C 0.090 3.910 20 C -0.050 4.050 21 C 0.017 3.983 22 N 0.024 4.976 23 O -0.146 6.146 24 O -0.140 6.140 25 O -0.293 6.293 26 C 0.200 3.800 27 O -0.298 6.298 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.262 0.738 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.183 0.817 38 H 0.189 0.811 39 H 0.125 0.875 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 6.734 23.198 25.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 C -0.177 4.177 4 C -0.573 4.573 5 H 0.067 0.933 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.776 3.224 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.025 3.975 13 O -0.249 6.249 14 C 0.334 3.666 15 O -0.401 6.401 16 C -0.070 4.070 17 C -0.051 4.051 18 C 0.032 3.968 19 C 0.043 3.957 20 C -0.069 4.069 21 C -0.065 4.065 22 N 0.550 4.450 23 O -0.366 6.366 24 O -0.361 6.361 25 O -0.208 6.208 26 C 0.091 3.909 27 O -0.213 6.213 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.200 0.800 38 H 0.207 0.793 39 H 0.142 0.858 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.364 7.361 23.091 25.330 hybrid contribution 0.726 -0.974 -1.118 1.650 sum -6.639 6.387 21.974 23.827 Atomic orbital electron populations 1.21634 0.96768 0.98704 1.00592 1.18287 0.93848 0.93332 0.88310 1.21636 0.97822 0.97745 1.00532 1.21192 1.32445 1.12546 0.91163 0.93334 1.25453 0.94951 0.95524 1.00999 1.69919 1.36632 1.23097 1.23867 0.85682 0.78704 0.78458 0.79529 1.20308 1.20645 1.19959 1.23436 0.98033 0.95360 0.80691 1.86521 1.68795 1.55363 1.14206 1.21050 0.77839 0.82377 0.85312 1.90994 1.34984 1.25758 1.88395 1.18374 1.01048 0.99192 0.88430 1.20259 0.94438 0.91110 0.99258 1.19734 0.94101 0.89269 0.93721 1.19416 0.96590 0.92890 0.86820 1.19352 0.96814 0.92925 0.97817 1.20364 0.97603 0.93753 0.94783 1.43370 1.01205 1.01468 0.98928 1.94497 1.81572 1.24562 1.35922 1.94648 1.16631 1.85386 1.39447 1.87439 1.42731 1.57923 1.32735 1.26627 0.87889 1.03550 0.72863 1.87538 1.59142 1.44073 1.30552 0.94430 0.91726 0.96157 0.96189 0.91717 0.94526 0.92798 0.92760 0.92812 0.79993 0.79333 0.85784 0.80282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.11 71.98 0.58 -4.89 16 2 C 0.06 2.98 0.58 -52.93 -0.03 2.95 16 3 C -0.12 -5.55 8.11 71.98 0.58 -4.97 16 4 C -0.54 -28.43 8.01 25.60 0.21 -28.23 16 5 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.63 5.15 84.66 0.44 2.07 16 7 N -0.90 -47.84 9.35 21.45 0.20 -47.64 16 8 Si 0.95 42.38 29.54 68.60 2.03 44.40 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 C 0.10 4.27 4.27 71.98 0.31 4.57 16 13 O -0.33 -12.58 8.14 -56.67 -0.46 -13.04 16 14 C 0.49 17.58 7.75 70.26 0.54 18.12 16 15 O -0.51 -21.52 12.78 27.64 0.35 -21.17 16 16 C -0.07 -1.84 5.87 -20.10 -0.12 -1.95 16 17 C -0.03 -0.65 9.62 22.61 0.22 -0.43 16 18 C 0.08 1.28 7.14 22.56 0.16 1.44 16 19 C 0.09 1.33 7.16 22.74 0.16 1.49 16 20 C -0.05 -0.85 9.82 22.30 0.22 -0.64 16 21 C 0.02 0.43 6.31 36.63 0.23 0.67 16 22 N 0.02 0.77 3.58 -45.87 -0.16 0.60 16 23 O -0.15 -4.56 19.14 18.89 0.36 -4.19 16 24 O -0.14 -5.25 16.11 26.32 0.42 -4.82 16 25 O -0.29 -3.14 11.39 -74.23 -0.85 -3.99 16 26 C 0.20 0.95 8.88 113.37 1.01 1.95 16 27 O -0.30 -3.83 11.41 -76.56 -0.87 -4.70 16 28 H 0.04 1.50 7.68 -2.39 -0.02 1.49 16 29 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 33 H 0.04 1.49 7.68 -2.39 -0.02 1.48 16 34 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 35 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.18 3.61 7.62 -2.91 -0.02 3.58 16 38 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.18 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -66.90 347.62 6.63 -60.27 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.10 Total: 2.12 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 4.51 Total: -7.84 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.04 Total: -47.03 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -1.04 Total: -51.91 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.90 6.63 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.973 kcal (2) G-P(sol) polarization free energy of solvation -66.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds