Wall clock time and date at job start Tue Mar 31 2020 19:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46684 * 2 1 4 4 C 1.50703 * 109.47184 * 240.00709 * 2 1 3 5 5 H 1.07993 * 119.99865 * 241.35807 * 4 2 1 6 6 C 1.37881 * 119.99779 * 61.35206 * 4 2 1 7 7 N 1.31515 * 119.99984 * 193.96441 * 6 4 2 8 8 Si 1.86800 * 120.00114 * 13.97113 * 6 4 2 9 9 H 1.48496 * 109.47183 * 84.55411 * 8 6 4 10 10 H 1.48503 * 109.47092 * 204.55437 * 8 6 4 11 11 H 1.48500 * 109.47079 * 324.54776 * 8 6 4 12 12 C 1.52992 * 109.47630 * 120.00437 * 2 1 3 13 13 O 1.45205 * 109.47014 * 300.00140 * 12 2 1 14 14 C 1.34751 * 116.99738 * 179.97438 * 13 12 2 15 15 O 1.21500 * 120.00103 * 0.02562 * 14 13 12 16 16 C 1.47473 * 119.99609 * 179.97438 * 14 13 12 17 17 C 1.39822 * 120.08571 * 180.02562 * 16 14 13 18 18 C 1.38054 * 119.90242 * 180.02562 * 17 16 14 19 19 C 1.39610 * 119.98443 * 359.97438 * 18 17 16 20 20 C 1.38838 * 120.06460 * 359.97438 * 19 18 17 21 21 N 1.48011 * 119.88619 * 180.02562 * 20 19 18 22 22 O 1.21805 * 119.99946 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00280 * 359.97438 * 21 20 19 24 24 C 1.37781 * 120.22198 * 0.02562 * 20 19 18 25 25 O 1.36346 * 108.58262 * 179.97438 * 19 18 17 26 26 C 1.43959 * 105.53826 * 17.35841 * 25 19 18 27 27 O 1.36540 * 131.43722 * 179.97438 * 18 17 16 28 28 H 1.08999 * 109.47149 * 309.30662 * 1 2 3 29 29 H 1.08993 * 109.47759 * 69.31078 * 1 2 3 30 30 H 1.09004 * 109.46714 * 189.31492 * 1 2 3 31 31 H 1.09008 * 109.46992 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47801 * 300.00127 * 3 2 1 33 33 H 1.09000 * 109.47047 * 60.01098 * 3 2 1 34 34 H 0.96996 * 120.00018 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47469 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47301 * 59.99798 * 12 2 1 37 37 H 1.08003 * 120.04996 * 0.02562 * 17 16 14 38 38 H 1.07998 * 119.99817 * 179.97438 * 24 20 19 39 39 H 1.09004 * 110.56556 * 214.18118 * 26 25 19 40 40 H 1.09002 * 110.56611 * 91.32617 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6350 -1.6009 -1.1317 6 6 1.7224 -0.2230 -2.4826 7 7 1.9161 -0.9719 -3.5462 8 14 1.0276 1.5011 -2.6682 9 1 2.1417 2.4821 -2.7080 10 1 0.2470 1.5871 -3.9286 11 1 0.1417 1.8044 -1.5157 12 6 2.0401 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4347 14 6 1.9179 -0.5494 3.6274 15 8 2.6189 -1.5406 3.6752 16 6 1.4638 0.0937 4.8744 17 6 1.8385 -0.4362 6.1129 18 6 1.4108 0.1685 7.2780 19 6 0.6059 1.3076 7.2181 20 6 0.2353 1.8335 5.9877 21 7 -0.6177 3.0416 5.9288 22 8 -0.9437 3.5050 4.8506 23 8 -0.9937 3.5725 6.9586 24 6 0.6590 1.2345 4.8215 25 8 0.3226 1.7069 8.4906 26 6 1.2932 1.0494 9.3261 27 8 1.6293 -0.1413 8.5897 28 1 -0.3633 0.6510 0.7952 29 1 -0.3634 0.3630 -0.9613 30 1 -0.3633 -1.0142 0.1663 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6984 -0.6290 -4.4270 35 1 3.1301 -0.7209 1.2493 36 1 1.6768 -1.7490 1.2491 37 1 2.4616 -1.3172 6.1581 38 1 0.3682 1.6464 3.8664 39 1 0.8562 0.7921 10.2911 40 1 2.1732 1.6788 9.4588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764835492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:40 Heat of formation + Delta-G solvation = -96.426920 kcal Electronic energy + Delta-G solvation = -29202.197324 eV Core-core repulsion = 24760.291786 eV Total energy + Delta-G solvation = -4441.905538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29983 -42.20929 -40.54613 -38.51066 -37.26622 -36.98757 -36.71535 -35.28194 -32.38898 -31.84235 -31.28625 -27.24571 -26.89825 -26.43275 -26.27993 -25.10926 -24.57858 -23.33158 -21.67080 -19.79326 -19.32109 -19.28491 -18.82882 -18.33567 -17.78470 -17.66056 -17.25678 -16.59765 -16.26216 -16.08723 -16.00738 -15.25192 -15.20345 -14.85450 -14.04719 -13.94643 -13.84744 -13.49299 -13.35583 -12.93783 -12.82656 -12.47328 -12.17652 -11.99492 -11.92390 -11.78873 -11.70174 -11.47707 -11.32947 -10.86331 -10.44411 -10.40538 -10.31811 -10.18735 -10.11475 -9.89268 -9.17940 -9.09724 -8.70778 -8.52118 -6.21262 -4.20621 -0.70345 -0.17934 0.80495 0.93040 1.63495 1.99913 2.29997 2.77355 2.87057 3.24942 3.33063 3.33823 3.39011 3.74322 3.91045 4.05659 4.16287 4.30074 4.32552 4.53248 4.62954 4.77636 5.07014 5.10865 5.25624 5.32630 5.62628 5.76714 5.89104 6.01072 6.11301 6.13181 6.45035 6.50169 6.57864 6.66565 6.72369 6.87988 7.15672 7.36225 7.36336 7.59394 7.75270 8.34601 8.80316 9.41782 10.91243 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.003017 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.579746 B = 9277.769678 C =10577.079299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 C -0.148 4.148 4 C -0.522 4.522 5 H 0.076 0.924 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.284 1.284 10 H -0.304 1.304 11 H -0.245 1.245 12 C 0.094 3.906 13 O -0.344 6.344 14 C 0.510 3.490 15 O -0.496 6.496 16 C -0.103 4.103 17 C 0.006 3.994 18 C 0.025 3.975 19 C 0.130 3.870 20 C -0.041 4.041 21 N 0.030 4.970 22 O -0.144 6.144 23 O -0.145 6.145 24 C 0.009 3.991 25 O -0.273 6.273 26 C 0.207 3.793 27 O -0.291 6.291 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.172 0.828 38 H 0.187 0.813 39 H 0.147 0.853 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.226 4.579 25.420 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.043 3.957 3 C -0.205 4.205 4 C -0.559 4.559 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.212 1.212 10 H -0.232 1.232 11 H -0.170 1.170 12 C 0.022 3.978 13 O -0.260 6.260 14 C 0.353 3.647 15 O -0.386 6.386 16 C -0.105 4.105 17 C -0.013 4.013 18 C -0.020 4.020 19 C 0.081 3.919 20 C -0.125 4.125 21 N 0.551 4.449 22 O -0.361 6.361 23 O -0.362 6.362 24 C -0.011 4.011 25 O -0.187 6.187 26 C 0.096 3.904 27 O -0.207 6.207 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.204 0.796 39 H 0.165 0.835 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.699 3.610 25.433 25.697 hybrid contribution -0.362 1.121 -0.036 1.179 sum -1.061 4.732 25.397 25.856 Atomic orbital electron populations 1.22251 0.97221 0.99959 1.00495 1.18610 0.93266 0.92649 0.91203 1.22316 1.00746 0.98048 0.99383 1.20622 1.34843 1.12558 0.87885 0.90571 1.24907 0.94420 0.97457 0.95571 1.69935 1.47747 1.35996 0.98803 0.87302 0.79610 0.85191 0.76326 1.21167 1.23248 1.17028 1.23607 0.98969 0.95958 0.79240 1.86537 1.69116 1.55764 1.14575 1.20280 0.78049 0.82030 0.84370 1.90879 1.34955 1.24622 1.88106 1.18760 1.02699 0.97188 0.91875 1.20443 0.94966 0.99378 0.86507 1.19196 1.01169 0.95083 0.86544 1.19557 0.93456 0.93138 0.85734 1.20024 1.07108 0.93531 0.91839 1.43281 0.99597 1.01062 1.00919 1.94616 1.59136 1.65326 1.17034 1.94597 1.56757 1.60930 1.23913 1.21298 0.90151 0.91533 0.98071 1.87611 1.51872 1.66588 1.12609 1.26008 0.90945 0.80087 0.93359 1.87509 1.84676 1.35610 1.12879 0.94812 0.92533 0.93724 0.93105 0.93998 0.94017 0.92362 0.91233 0.91122 0.81074 0.79561 0.83540 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 7.58 37.16 0.28 -2.64 16 2 C 0.04 0.94 0.58 -155.66 -0.09 0.85 16 3 C -0.15 -3.02 7.55 37.16 0.28 -2.74 16 4 C -0.52 -13.69 8.62 -34.44 -0.30 -13.99 16 5 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 6 C 0.08 2.18 5.32 -17.82 -0.09 2.09 16 7 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 8 Si 0.88 20.93 22.79 -169.99 -3.87 17.06 16 9 H -0.28 -6.69 7.10 56.52 0.40 -6.29 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.24 -5.33 4.65 56.52 0.26 -5.07 16 12 C 0.09 1.79 4.26 37.15 0.16 1.95 16 13 O -0.34 -5.52 8.30 -40.63 -0.34 -5.86 16 14 C 0.51 7.24 7.89 34.49 0.27 7.51 16 15 O -0.50 -8.10 16.13 -19.27 -0.31 -8.41 16 16 C -0.10 -1.12 5.87 -104.99 -0.62 -1.74 16 17 C 0.01 0.05 9.60 -39.06 -0.38 -0.32 16 18 C 0.03 0.22 7.14 -39.14 -0.28 -0.06 16 19 C 0.13 1.29 6.76 -38.85 -0.26 1.02 16 20 C -0.04 -0.46 6.85 -79.90 -0.55 -1.00 16 21 N 0.03 0.40 4.45 33.99 0.15 0.55 16 22 O -0.14 -2.02 18.43 -29.46 -0.54 -2.57 16 23 O -0.14 -2.00 18.04 -34.59 -0.62 -2.62 16 24 C 0.01 0.09 9.11 -39.20 -0.36 -0.27 16 25 O -0.27 -2.42 10.50 -50.74 -0.53 -2.95 16 26 C 0.21 0.98 8.88 101.05 0.90 1.88 16 27 O -0.29 -2.16 11.41 -45.82 -0.52 -2.69 16 28 H 0.03 0.61 7.94 -51.93 -0.41 0.20 16 29 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 30 H 0.04 0.88 8.12 -51.93 -0.42 0.46 16 31 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 32 H 0.04 0.90 2.25 -51.93 -0.12 0.79 16 33 H 0.04 0.74 7.68 -51.93 -0.40 0.34 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.17 1.37 7.64 -52.48 -0.40 0.97 16 38 H 0.19 1.98 7.13 -52.49 -0.37 1.60 16 39 H 0.15 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -31.40 340.95 -5.87 -37.27 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.15 Total: -2.12 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.03 Total: -7.45 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 0.92 Total: -24.80 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -2.87 Total: -25.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -3.87 Total: 17.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.40 -5.87 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764835492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.161 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds